Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47064 * 240.00137 * 3 2 1 5 5 H 1.48505 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47275 * 120.00052 * 3 2 1 7 7 C 1.38806 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00465 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46635 * 125.33010 * 0.03204 * 9 7 2 11 11 C 1.53687 * 108.00977 * 180.81397 * 10 9 7 12 12 H 1.09001 * 113.05490 * 253.80385 * 11 10 9 13 13 C 1.53726 * 109.34516 * 127.55632 * 11 10 9 14 14 N 1.46671 * 107.93955 * 266.25345 * 13 11 10 15 15 C 1.34775 * 125.33612 * 180.54559 * 14 13 11 16 16 O 1.21543 * 120.00140 * 5.26998 * 15 14 13 17 17 C 1.47881 * 119.99962 * 185.27670 * 15 14 13 18 18 C 1.39447 * 121.11547 * 36.14720 * 17 15 14 19 19 C 1.38617 * 119.37873 * 180.22371 * 18 17 15 20 20 N 1.31583 * 121.63162 * 359.50074 * 19 18 17 21 21 C 1.32214 * 121.86736 * 0.25054 * 20 19 18 22 22 N 1.37207 * 134.66978 * 179.97438 * 21 20 19 23 23 H 0.97005 * 125.87194 * 0.02562 * 22 21 20 24 24 N 1.28781 * 108.26170 * 180.02562 * 22 21 20 25 25 N 1.28695 * 111.75653 * 359.97438 * 24 22 21 26 26 C 1.34391 * 109.15099 * 0.02562 * 25 24 22 27 27 C 1.46779 * 109.32456 * 0.80275 * 14 13 11 28 28 C 1.54157 * 106.52405 * 341.09434 * 27 14 13 29 29 H 1.09001 * 113.83619 * 265.67668 * 28 27 14 30 30 C 1.46745 * 125.32866 * 179.97438 * 9 7 2 31 31 H 0.97001 * 120.00590 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.76676 * 61.16491 * 10 9 7 33 33 H 1.09000 * 109.76059 * 300.45288 * 10 9 7 34 34 H 1.08991 * 109.77756 * 146.62996 * 13 11 10 35 35 H 1.08997 * 109.77246 * 25.86687 * 13 11 10 36 36 H 1.08003 * 120.31357 * 359.97438 * 18 17 15 37 37 H 1.08001 * 119.18514 * 179.77190 * 19 18 17 38 38 H 1.08998 * 110.02243 * 100.50944 * 27 14 13 39 39 H 1.08995 * 110.02790 * 221.92793 * 27 14 13 40 40 H 1.09004 * 110.00501 * 42.37008 * 30 9 7 41 41 H 1.08998 * 110.01605 * 281.00170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1344 -2.5243 -0.0007 11 6 -0.4716 -4.0235 0.0201 12 1 -0.8369 -4.3922 -0.9384 13 6 -1.4476 -4.3100 1.1728 14 7 -0.6596 -4.7126 2.3425 15 6 -1.1663 -5.0542 3.5437 16 8 -2.3695 -5.1362 3.6947 17 6 -0.2583 -5.3292 4.6781 18 6 0.9211 -4.6050 4.8490 19 6 1.7482 -4.8960 5.9227 20 7 1.4442 -5.8344 6.7935 21 6 0.3386 -6.5519 6.6891 22 7 -0.2260 -7.5659 7.4210 23 1 0.1444 -7.9601 8.2262 24 7 -1.3323 -7.9043 6.8553 25 7 -1.5632 -7.2028 5.8013 26 6 -0.5587 -6.3275 5.6255 27 6 0.7677 -4.6793 2.0015 28 6 0.8515 -4.7082 0.4624 29 1 0.9786 -5.7079 0.0470 30 6 1.9382 -3.7215 -0.0016 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5473 -2.0660 -0.8993 33 1 -0.5497 -2.0408 0.8836 34 1 -2.1259 -5.1150 0.8903 35 1 -2.0184 -3.4108 1.4047 36 1 1.1896 -3.8274 4.1492 37 1 2.6627 -4.3357 6.0500 38 1 1.2219 -3.7660 2.3857 39 1 1.2715 -5.5513 2.4182 40 1 2.7821 -3.7447 0.6880 41 1 2.2708 -3.9785 -1.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048931237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = 140.719654 kcal Electronic energy + Delta-G solvation = -28029.002757 eV Core-core repulsion = 24140.596934 eV Total energy + Delta-G solvation = -3888.405823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.65411 -40.48972 -39.18222 -38.11435 -35.04841 -34.44295 -32.66609 -32.02166 -31.08204 -30.22840 -29.51368 -26.33867 -25.63986 -25.18254 -24.15429 -23.57007 -22.61238 -20.45485 -20.18231 -19.44070 -18.96691 -18.25494 -17.48824 -16.86810 -16.84858 -16.28341 -15.59814 -15.46028 -14.88246 -14.65971 -14.33549 -13.78000 -13.57286 -13.47355 -13.21726 -12.82469 -12.72347 -12.55966 -12.12275 -12.08023 -11.94398 -11.78648 -11.54266 -11.47038 -10.95733 -10.85382 -10.52146 -10.30077 -10.16755 -10.15819 -9.94478 -9.72814 -9.64670 -9.50943 -9.31716 -8.66710 -8.43044 -6.91158 -5.78796 -3.13317 -0.15385 0.62407 1.85799 1.94449 2.68840 2.91245 3.35290 3.35464 3.40459 3.42253 3.48306 3.97454 4.12254 4.27271 4.43295 4.52071 4.70844 4.88538 4.93062 5.17374 5.19976 5.23885 5.44034 5.48703 5.52475 5.57937 5.64215 5.77516 5.89635 5.93735 6.10495 6.20846 6.27930 6.31076 6.45399 6.50491 6.53820 6.73470 7.19922 7.48018 7.50445 7.59321 7.74949 7.88808 8.15321 8.19528 9.14881 9.75470 10.38585 11.32283 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.003415 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.541213 B = 8197.131844 C = 8854.234864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.093 0.907 13 C 0.121 3.879 14 N -0.598 5.598 15 C 0.568 3.432 16 O -0.512 6.512 17 C 0.001 3.999 18 C -0.142 4.142 19 C 0.167 3.833 20 N -0.464 5.464 21 C 0.215 3.785 22 N -0.407 5.407 23 H 0.457 0.543 24 N 0.000 5.000 25 N -0.216 5.216 26 C -0.001 4.001 27 C 0.106 3.894 28 C -0.111 4.111 29 H 0.091 0.909 30 C 0.145 3.855 31 H 0.254 0.746 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -13.108 10.317 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.142 4.142 12 H 0.111 0.889 13 C -0.001 4.001 14 N -0.331 5.331 15 C 0.354 3.646 16 O -0.387 6.387 17 C -0.015 4.015 18 C -0.165 4.165 19 C -0.005 4.005 20 N -0.177 5.177 21 C -0.029 4.029 22 N -0.137 5.137 23 H 0.305 0.695 24 N 0.017 4.983 25 N -0.093 5.093 26 C -0.130 4.130 27 C -0.016 4.016 28 C -0.131 4.131 29 H 0.109 0.891 30 C 0.019 3.981 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.730 -14.081 11.185 18.188 hybrid contribution 1.111 1.496 -0.128 1.868 sum 3.841 -12.585 11.057 17.187 Atomic orbital electron populations 1.69936 1.04870 1.25321 1.56529 1.24795 0.95683 0.97692 1.01928 0.86217 0.78471 0.83237 0.77899 1.21169 1.21623 1.21141 1.18968 0.90399 0.82250 1.44541 0.90392 1.44208 1.01443 0.99898 1.87342 1.21133 0.84580 0.86711 1.01687 1.23175 0.93727 1.00504 0.96834 0.88916 1.21899 0.93932 1.00110 0.84110 1.48124 1.08703 1.65574 1.10698 1.17450 0.87410 0.78403 0.81300 1.90844 1.14247 1.51057 1.82598 1.19572 0.94554 0.93251 0.94123 1.22778 0.92783 1.00652 1.00276 1.22915 0.98810 0.91065 0.87753 1.66341 1.15580 1.06628 1.29198 1.19839 0.94762 0.94949 0.93303 1.44655 1.16998 1.27268 1.24813 0.69493 1.78216 0.98932 1.17519 1.03623 1.75495 1.20575 1.04771 1.08436 1.20095 0.94836 1.00189 0.97880 1.22366 0.81214 1.01674 0.96342 1.22959 0.97403 0.99354 0.93411 0.89066 1.21169 0.93613 0.85693 0.97654 0.93577 0.93667 0.92957 0.91851 0.90455 0.81412 0.79799 0.89757 0.91531 0.94321 0.96150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.54 10.25 55.49 0.57 -24.97 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 3 Si 0.91 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.23 -5.97 10.25 -15.06 -0.15 -6.12 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.60 -13.72 3.37 -171.93 -0.58 -14.30 16 10 C 0.18 4.03 4.75 -3.61 -0.02 4.01 16 11 C -0.12 -2.03 4.02 -88.61 -0.36 -2.39 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.12 1.99 6.24 -3.57 -0.02 1.97 16 14 N -0.60 -9.47 3.31 -173.27 -0.57 -10.04 16 15 C 0.57 9.68 7.55 -12.31 -0.09 9.59 16 16 O -0.51 -10.51 17.22 5.33 0.09 -10.42 16 17 C 0.00 0.02 5.47 -104.50 -0.57 -0.55 16 18 C -0.14 -1.54 8.39 -38.99 -0.33 -1.87 16 19 C 0.17 1.50 11.14 -17.52 -0.20 1.30 16 20 N -0.46 -4.97 10.35 -12.39 -0.13 -5.10 16 21 C 0.21 2.59 8.56 -156.21 -1.34 1.25 16 22 N -0.41 -4.01 7.06 31.11 0.22 -3.79 16 23 H 0.46 2.45 8.96 -190.25 -1.71 0.75 16 24 N 0.00 0.00 13.29 60.35 0.80 0.80 16 25 N -0.22 -3.46 12.40 32.23 0.40 -3.06 16 26 C 0.00 -0.02 7.01 -84.72 -0.59 -0.61 16 27 C 0.11 1.47 4.54 -3.29 -0.01 1.46 16 28 C -0.11 -1.64 4.19 -88.24 -0.37 -2.00 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 C 0.15 2.56 6.37 -3.41 -0.02 2.54 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.05 1.13 7.45 -51.93 -0.39 0.74 16 33 H 0.05 1.30 6.51 -51.93 -0.34 0.96 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.39 7.44 -51.93 -0.39 1.01 16 36 H 0.17 1.71 5.63 -52.48 -0.30 1.41 16 37 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.08 1.24 6.11 -51.93 -0.32 0.93 16 39 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 40 H 0.04 0.64 7.95 -51.93 -0.41 0.23 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -33.63 336.42 -9.22 -42.84 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.89 Total: -1.32 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -4.17 Total: 8.36 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.71 Total: -60.46 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.63 -9.22 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048931237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.563 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds