Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99754 * 2 1 4 4 H 1.48500 * 109.47064 * 240.00137 * 3 2 1 5 5 H 1.48505 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47275 * 120.00052 * 3 2 1 7 7 C 1.38806 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00465 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.46635 * 125.33010 * 0.03204 * 9 7 2 11 11 C 1.53687 * 108.00977 * 180.81397 * 10 9 7 12 12 H 1.09001 * 113.05490 * 253.80385 * 11 10 9 13 13 C 1.53726 * 109.34516 * 127.55632 * 11 10 9 14 14 N 1.46671 * 107.93955 * 266.25345 * 13 11 10 15 15 C 1.34775 * 125.33612 * 180.54559 * 14 13 11 16 16 O 1.21543 * 120.00140 * 5.26998 * 15 14 13 17 17 C 1.47881 * 119.99962 * 185.27670 * 15 14 13 18 18 C 1.39447 * 121.11547 * 36.14720 * 17 15 14 19 19 C 1.38617 * 119.37873 * 180.22371 * 18 17 15 20 20 N 1.31583 * 121.63162 * 359.50074 * 19 18 17 21 21 C 1.32214 * 121.86736 * 0.25054 * 20 19 18 22 22 N 1.37207 * 134.66978 * 179.97438 * 21 20 19 23 23 H 0.97005 * 125.87194 * 0.02562 * 22 21 20 24 24 N 1.28781 * 108.26170 * 180.02562 * 22 21 20 25 25 N 1.28695 * 111.75653 * 359.97438 * 24 22 21 26 26 C 1.34391 * 109.15099 * 0.02562 * 25 24 22 27 27 C 1.46779 * 109.32456 * 0.80275 * 14 13 11 28 28 C 1.54157 * 106.52405 * 341.09434 * 27 14 13 29 29 H 1.09001 * 113.83619 * 265.67668 * 28 27 14 30 30 C 1.46745 * 125.32866 * 179.97438 * 9 7 2 31 31 H 0.97001 * 120.00590 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.76676 * 61.16491 * 10 9 7 33 33 H 1.09000 * 109.76059 * 300.45288 * 10 9 7 34 34 H 1.08991 * 109.77756 * 146.62996 * 13 11 10 35 35 H 1.08997 * 109.77246 * 25.86687 * 13 11 10 36 36 H 1.08003 * 120.31357 * 359.97438 * 18 17 15 37 37 H 1.08001 * 119.18514 * 179.77190 * 19 18 17 38 38 H 1.08998 * 110.02243 * 100.50944 * 27 14 13 39 39 H 1.08995 * 110.02790 * 221.92793 * 27 14 13 40 40 H 1.09004 * 110.00501 * 42.37008 * 30 9 7 41 41 H 1.08998 * 110.01605 * 281.00170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1344 -2.5243 -0.0007 11 6 -0.4716 -4.0235 0.0201 12 1 -0.8369 -4.3922 -0.9384 13 6 -1.4476 -4.3100 1.1728 14 7 -0.6596 -4.7126 2.3425 15 6 -1.1663 -5.0542 3.5437 16 8 -2.3695 -5.1362 3.6947 17 6 -0.2583 -5.3292 4.6781 18 6 0.9211 -4.6050 4.8490 19 6 1.7482 -4.8960 5.9227 20 7 1.4442 -5.8344 6.7935 21 6 0.3386 -6.5519 6.6891 22 7 -0.2260 -7.5659 7.4210 23 1 0.1444 -7.9601 8.2262 24 7 -1.3323 -7.9043 6.8553 25 7 -1.5632 -7.2028 5.8013 26 6 -0.5587 -6.3275 5.6255 27 6 0.7677 -4.6793 2.0015 28 6 0.8515 -4.7082 0.4624 29 1 0.9786 -5.7079 0.0470 30 6 1.9382 -3.7215 -0.0016 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5473 -2.0660 -0.8993 33 1 -0.5497 -2.0408 0.8836 34 1 -2.1259 -5.1150 0.8903 35 1 -2.0184 -3.4108 1.4047 36 1 1.1896 -3.8274 4.1492 37 1 2.6627 -4.3357 6.0500 38 1 1.2219 -3.7660 2.3857 39 1 1.2715 -5.5513 2.4182 40 1 2.7821 -3.7447 0.6880 41 1 2.2708 -3.9785 -1.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048931237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = 116.152907 kcal Electronic energy + Delta-G solvation = -28030.068051 eV Core-core repulsion = 24140.596934 eV Total energy + Delta-G solvation = -3889.471117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.58430 -41.74065 -40.22848 -39.41172 -36.60653 -35.41372 -34.18562 -33.27586 -31.99154 -31.59349 -31.08438 -27.73629 -27.04238 -26.52047 -25.12067 -24.77255 -23.79396 -21.85112 -21.45903 -20.79439 -19.97984 -19.29166 -18.81779 -18.38032 -17.83865 -17.55178 -16.72232 -16.67706 -16.29903 -15.97882 -15.71860 -15.40125 -14.68125 -14.59836 -14.38575 -14.23698 -13.94203 -13.59345 -13.53073 -13.46798 -13.21097 -13.05236 -12.81275 -12.78176 -12.66660 -12.59802 -11.98691 -11.86730 -11.78689 -11.50510 -11.48191 -11.32118 -10.71974 -10.60113 -10.41043 -10.28366 -9.72103 -8.79527 -7.77622 -5.12071 -1.09652 -0.24843 0.92471 1.06847 1.52361 1.54026 1.54939 1.60341 1.72959 2.39544 2.56006 2.60041 3.02591 3.17955 3.31095 3.41066 3.46626 3.61649 3.72068 3.88028 3.97697 4.03572 4.24033 4.29394 4.30633 4.35014 4.56122 4.56470 4.69908 4.77565 4.88053 4.94367 5.11160 5.13188 5.16024 5.22305 5.43621 5.57501 5.62962 5.69785 5.85217 6.28353 6.33162 6.36742 6.88273 6.94241 7.18610 7.88583 8.49595 9.32015 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.003415 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.541213 B = 8197.131844 C = 8854.234864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.304 1.304 6 H -0.273 1.273 7 C -0.233 4.233 8 H 0.090 0.910 9 N -0.621 5.621 10 C 0.198 3.802 11 C -0.112 4.112 12 H 0.112 0.888 13 C 0.125 3.875 14 N -0.597 5.597 15 C 0.565 3.435 16 O -0.561 6.561 17 C -0.026 4.026 18 C -0.120 4.120 19 C 0.183 3.817 20 N -0.458 5.458 21 C 0.213 3.787 22 N -0.379 5.379 23 H 0.476 0.524 24 N -0.003 5.003 25 N -0.266 5.266 26 C -0.025 4.025 27 C 0.107 3.893 28 C -0.095 4.095 29 H 0.130 0.870 30 C 0.140 3.860 31 H 0.242 0.758 32 H 0.002 0.998 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.178 0.822 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -14.522 11.377 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.206 1.206 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.362 4.362 8 H 0.107 0.893 9 N -0.347 5.347 10 C 0.072 3.928 11 C -0.131 4.131 12 H 0.130 0.870 13 C 0.002 3.998 14 N -0.329 5.329 15 C 0.353 3.647 16 O -0.440 6.440 17 C -0.043 4.043 18 C -0.143 4.143 19 C 0.010 3.990 20 N -0.171 5.171 21 C -0.030 4.030 22 N -0.113 5.113 23 H 0.328 0.672 24 N 0.014 4.986 25 N -0.141 5.141 26 C -0.154 4.154 27 C -0.014 4.014 28 C -0.114 4.114 29 H 0.148 0.852 30 C 0.015 3.985 31 H 0.052 0.948 32 H 0.020 0.980 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.195 0.805 37 H 0.250 0.750 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.248 -15.559 12.263 20.773 hybrid contribution 0.136 1.948 -0.442 2.003 sum 6.384 -13.611 11.820 19.124 Atomic orbital electron populations 1.70183 1.06315 1.24974 1.58640 1.25560 0.96354 1.00843 1.03022 0.85255 0.77081 0.79300 0.78313 1.20589 1.23108 1.19858 1.19407 0.91141 0.83381 1.42274 0.89271 1.44481 1.01915 1.01347 1.86991 1.20757 0.84351 0.89855 0.97802 1.22995 0.95304 0.96921 0.97921 0.86963 1.21756 0.94130 0.99347 0.84548 1.48179 1.09551 1.64866 1.10277 1.17943 0.87318 0.77397 0.82024 1.90804 1.16449 1.53276 1.83448 1.19437 0.95748 0.95204 0.93863 1.22983 0.91334 0.99366 1.00647 1.23713 0.99386 0.89951 0.85904 1.66540 1.14564 1.06683 1.29353 1.19916 0.94790 0.95441 0.92862 1.44661 1.15841 1.26133 1.24697 0.67151 1.78119 0.99798 1.17344 1.03304 1.75447 1.22240 1.06420 1.10026 1.20315 0.95414 1.00617 0.99070 1.22483 0.80054 1.02911 0.95964 1.23012 0.94405 1.00166 0.93857 0.85173 1.21392 0.94854 0.83658 0.98584 0.94821 0.97990 0.96826 0.90676 0.93293 0.80531 0.75014 0.90521 0.88041 0.92275 0.95434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.14 10.25 21.65 0.22 -54.91 16 2 C -0.06 -3.47 5.48 84.86 0.47 -3.01 16 3 Si 0.97 43.37 29.55 68.60 2.03 45.39 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.23 -11.79 10.25 84.03 0.86 -10.92 16 8 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.62 -27.95 3.37 -697.86 -2.35 -30.30 16 10 C 0.20 8.93 4.75 86.58 0.41 9.34 16 11 C -0.11 -3.62 4.02 -9.49 -0.04 -3.66 16 12 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 13 C 0.12 4.14 6.24 86.59 0.54 4.68 16 14 N -0.60 -18.53 3.31 -820.40 -2.72 -21.25 16 15 C 0.56 19.44 7.55 86.80 0.65 20.09 16 16 O -0.56 -24.08 17.22 -3.85 -0.07 -24.15 16 17 C -0.03 -0.73 5.47 -19.79 -0.11 -0.84 16 18 C -0.12 -2.26 8.39 22.65 0.19 -2.07 16 19 C 0.18 2.48 11.14 84.82 0.94 3.42 16 20 N -0.46 -8.13 10.35 -193.10 -2.00 -10.13 16 21 C 0.21 4.69 8.56 134.17 1.15 5.83 16 22 N -0.38 -6.82 7.06 -55.48 -0.39 -7.21 16 23 H 0.48 4.00 8.96 -219.83 -1.97 2.03 16 24 N 0.00 -0.07 13.29 37.02 0.49 0.42 16 25 N -0.27 -8.60 12.40 -51.93 -0.64 -9.24 16 26 C -0.02 -0.71 7.01 40.06 0.28 -0.43 16 27 C 0.11 2.66 4.54 86.72 0.39 3.06 16 28 C -0.10 -2.47 4.19 -9.25 -0.04 -2.51 16 29 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 30 C 0.14 4.53 6.37 86.65 0.55 5.08 16 31 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.00 0.10 7.45 -2.39 -0.02 0.08 16 33 H 0.01 0.71 6.51 -2.39 -0.02 0.70 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 1.89 7.44 -2.39 -0.02 1.88 16 36 H 0.18 3.03 5.63 -2.91 -0.02 3.02 16 37 H 0.23 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.08 2.06 6.11 -2.39 -0.01 2.04 16 39 H 0.10 1.87 7.54 -2.39 -0.02 1.85 16 40 H 0.06 1.71 7.95 -2.39 -0.02 1.69 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -78.47 336.42 -0.03 -78.50 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -0.86 Total: 4.81 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 6.26 Total: 28.06 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -7.39 Total: -132.62 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.07 Total: -24.15 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -78.47 -0.03 -78.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048931237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.654 kcal (2) G-P(sol) polarization free energy of solvation -78.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds