Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00157 * 2 1 4 4 H 1.48496 * 109.46882 * 274.98604 * 3 2 1 5 5 H 1.48505 * 109.46802 * 34.98538 * 3 2 1 6 6 H 1.48498 * 109.46784 * 154.98291 * 3 2 1 7 7 C 1.38812 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00288 * 186.94415 * 7 2 1 9 9 N 1.36946 * 119.99885 * 6.93910 * 7 2 1 10 10 C 1.46633 * 125.32537 * 354.01851 * 9 7 2 11 11 C 1.53694 * 108.00711 * 180.81373 * 10 9 7 12 12 H 1.09003 * 113.05197 * 253.80588 * 11 10 9 13 13 C 1.53723 * 109.34381 * 127.55680 * 11 10 9 14 14 N 1.46675 * 107.94132 * 266.25482 * 13 11 10 15 15 C 1.34773 * 125.33983 * 180.54982 * 14 13 11 16 16 O 1.21527 * 119.99696 * 359.71277 * 15 14 13 17 17 C 1.48124 * 120.00121 * 179.97438 * 15 14 13 18 18 N 1.33469 * 125.32371 * 359.74835 * 17 15 14 19 19 C 1.32502 * 109.75439 * 180.02562 * 18 17 15 20 20 N 1.33979 * 132.34322 * 180.02562 * 19 18 17 21 21 C 1.31258 * 120.88055 * 179.97438 * 20 19 18 22 22 C 1.40170 * 120.35802 * 359.97438 * 21 20 19 23 23 C 1.35676 * 119.27048 * 0.02562 * 22 21 20 24 24 N 1.36170 * 119.03188 * 0.02562 * 23 22 21 25 25 N 1.31991 * 125.32460 * 179.43685 * 17 15 14 26 26 C 1.46775 * 109.32200 * 0.80300 * 14 13 11 27 27 C 1.54158 * 106.52656 * 341.09571 * 26 14 13 28 28 H 1.09004 * 113.83280 * 265.67835 * 27 26 14 29 29 C 1.46736 * 125.32835 * 173.98758 * 9 7 2 30 30 H 0.97002 * 119.99985 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.76398 * 61.17095 * 10 9 7 32 32 H 1.09002 * 109.76376 * 300.44802 * 10 9 7 33 33 H 1.08997 * 109.77520 * 146.63412 * 13 11 10 34 34 H 1.09001 * 109.77220 * 25.87200 * 13 11 10 35 35 H 1.08005 * 119.82350 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.36644 * 180.02562 * 22 21 20 37 37 H 1.08007 * 120.48793 * 180.02562 * 23 22 21 38 38 H 1.09004 * 110.02436 * 100.51644 * 26 14 13 39 39 H 1.08995 * 110.02917 * 221.93004 * 26 14 13 40 40 H 1.09007 * 110.01091 * 42.37092 * 29 9 7 41 41 H 1.09004 * 110.01577 * 281.00042 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0843 -1.2056 0.1125 9 7 1.3331 -2.3837 -0.1444 10 6 -0.1259 -2.5257 -0.1812 11 6 -0.4542 -4.0193 -0.3346 12 1 -0.8036 -4.2791 -1.3339 13 6 -1.4444 -4.4385 0.7639 14 7 -0.6704 -4.9670 1.8922 15 6 -1.1918 -5.4443 3.0397 16 8 -2.3961 -5.4542 3.2020 17 6 -0.2966 -5.9516 4.1053 18 7 1.0359 -5.9902 4.0402 19 6 1.5244 -6.5015 5.1608 20 7 2.7765 -6.7425 5.5721 21 6 3.0085 -7.2668 6.7529 22 6 1.9446 -7.5845 7.6084 23 6 0.6724 -7.3448 7.2023 24 7 0.4630 -6.8011 5.9715 25 7 -0.6917 -6.4308 5.2699 26 6 0.7612 -4.8888 1.5781 27 6 0.8669 -4.7435 0.0470 28 1 1.0060 -5.6893 -0.4766 29 6 1.9539 -3.7057 -0.2863 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5289 -1.9709 -1.0285 32 1 -0.5566 -2.1471 0.7457 33 1 -2.1136 -5.2096 0.3825 34 1 -2.0241 -3.5739 1.0873 35 1 4.0247 -7.4543 7.0670 36 1 2.1354 -8.0155 8.5801 37 1 -0.1620 -7.5816 7.8458 38 1 1.2044 -4.0226 2.0696 39 1 1.2646 -5.7999 1.9012 40 1 2.7878 -3.8027 0.4089 41 1 2.3025 -3.8462 -1.3094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049123736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = 158.690518 kcal Electronic energy + Delta-G solvation = -27769.669475 eV Core-core repulsion = 23882.042927 eV Total energy + Delta-G solvation = -3887.626548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.22064 -40.22566 -39.06905 -37.98594 -35.08365 -34.81432 -32.34265 -31.77700 -31.03944 -30.26128 -29.36945 -26.55968 -25.40448 -25.28989 -24.47074 -23.59877 -22.30356 -20.03792 -19.74581 -19.29764 -18.75283 -18.26800 -17.23015 -17.02146 -16.72903 -16.30654 -15.91039 -15.25576 -14.95217 -14.71182 -14.27063 -13.71408 -13.65546 -13.28453 -13.12061 -13.10237 -12.75854 -12.72056 -12.33488 -12.01429 -11.88049 -11.45882 -11.36936 -10.85377 -10.79550 -10.53830 -10.45057 -10.37423 -10.11144 -10.09869 -10.02769 -9.98674 -9.72098 -9.57334 -9.22126 -8.53963 -8.34955 -6.77553 -5.69139 -3.01183 -0.04460 0.24258 1.39722 1.62169 2.66355 2.88078 3.03237 3.33173 3.43314 3.48461 3.50571 3.74895 3.83393 4.18081 4.38627 4.53796 4.64572 4.81688 4.93798 5.08188 5.31019 5.38431 5.54368 5.58851 5.63073 5.64520 5.74604 5.77051 5.86890 6.02152 6.16335 6.27010 6.35967 6.50073 6.56631 6.66530 6.72942 6.90835 7.00141 7.41031 7.55904 7.64067 7.65114 7.85664 8.12688 8.31190 9.26347 9.87255 10.51538 11.42937 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.003429 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.899541 B = 8162.883691 C = 9048.396269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.094 0.906 13 C 0.122 3.878 14 N -0.579 5.579 15 C 0.617 3.383 16 O -0.517 6.517 17 C 0.253 3.747 18 N -0.487 5.487 19 C 0.439 3.561 20 N -0.445 5.445 21 C 0.207 3.793 22 C -0.221 4.221 23 C 0.172 3.828 24 N -0.330 5.330 25 N -0.271 5.271 26 C 0.114 3.886 27 C -0.113 4.113 28 H 0.090 0.910 29 C 0.146 3.854 30 H 0.252 0.748 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.193 0.807 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -18.972 14.181 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.143 4.143 12 H 0.112 0.888 13 C 0.000 4.000 14 N -0.310 5.310 15 C 0.398 3.602 16 O -0.391 6.391 17 C -0.030 4.030 18 N -0.220 5.220 19 C 0.079 3.921 20 N -0.159 5.159 21 C 0.020 3.980 22 C -0.246 4.246 23 C 0.035 3.965 24 N -0.110 5.110 25 N -0.104 5.104 26 C -0.008 4.008 27 C -0.133 4.133 28 H 0.108 0.892 29 C 0.020 3.980 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.210 0.790 36 H 0.194 0.806 37 H 0.202 0.798 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.139 -18.319 13.362 22.891 hybrid contribution 0.080 0.627 0.928 1.122 sum 3.219 -17.693 14.290 22.969 Atomic orbital electron populations 1.69969 1.04888 1.25022 1.56816 1.24807 0.95681 0.97652 1.02146 0.86129 0.78699 0.83694 0.77454 1.21630 1.21868 1.20641 1.19049 0.91136 0.82459 1.42996 0.90350 1.44202 1.01418 1.01206 1.86028 1.21126 0.84786 0.86868 1.01323 1.23181 0.93815 1.00154 0.97138 0.88791 1.21985 0.94131 0.98667 0.85236 1.47986 1.09881 1.58459 1.14708 1.15815 0.85241 0.79297 0.79798 1.90837 1.13076 1.56429 1.78750 1.24176 0.89400 0.96039 0.93425 1.71126 1.07419 1.24576 1.18925 1.22875 0.85497 0.95539 0.88228 1.68106 1.14934 1.15681 1.17203 1.23671 1.01195 0.86694 0.86486 1.22009 0.90916 1.07345 1.04302 1.22231 1.00068 0.90590 0.83600 1.49106 1.08587 1.39561 1.13791 1.78943 1.00442 1.24436 1.06626 1.22395 0.79575 1.03632 0.95192 1.23007 0.97006 0.98835 0.94430 0.89166 1.21157 0.93758 0.85346 0.97775 0.93767 0.93351 0.93484 0.91610 0.90237 0.79041 0.80625 0.79814 0.89875 0.89363 0.94236 0.96154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 10.30 55.49 0.57 -26.60 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.37 10.24 -15.06 -0.15 -6.52 16 8 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 9 N -0.60 -15.23 3.37 -171.93 -0.58 -15.81 16 10 C 0.18 4.40 4.76 -3.61 -0.02 4.38 16 11 C -0.12 -2.25 4.02 -88.60 -0.36 -2.61 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 13 C 0.12 2.16 6.23 -3.57 -0.02 2.14 16 14 N -0.58 -10.72 3.31 -173.17 -0.57 -11.30 16 15 C 0.62 11.91 7.86 -12.20 -0.10 11.81 16 16 O -0.52 -10.99 17.38 5.34 0.09 -10.90 16 17 C 0.25 4.54 7.77 -156.79 -1.22 3.32 16 18 N -0.49 -8.37 8.31 -12.23 -0.10 -8.47 16 19 C 0.44 6.34 8.99 -323.05 -2.90 3.43 16 20 N -0.45 -5.09 10.48 -13.79 -0.14 -5.24 16 21 C 0.21 1.13 11.27 -17.07 -0.19 0.93 16 22 C -0.22 -0.75 10.06 -39.77 -0.40 -1.15 16 23 C 0.17 1.13 11.32 -16.54 -0.19 0.95 16 24 N -0.33 -4.18 3.91 -13.80 -0.05 -4.23 16 25 N -0.27 -4.45 12.78 32.02 0.41 -4.04 16 26 C 0.11 2.05 5.16 -3.29 -0.02 2.04 16 27 C -0.11 -1.95 4.19 -88.25 -0.37 -2.32 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 C 0.15 2.98 6.37 -3.43 -0.02 2.96 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.05 1.28 7.32 -51.93 -0.38 0.90 16 32 H 0.05 1.27 6.67 -51.93 -0.35 0.93 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.53 7.44 -51.93 -0.39 1.15 16 35 H 0.19 0.17 8.06 -52.48 -0.42 -0.25 16 36 H 0.18 -0.20 8.06 -52.49 -0.42 -0.63 16 37 H 0.18 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.08 1.75 7.72 -51.93 -0.40 1.35 16 39 H 0.09 1.50 6.41 -51.93 -0.33 1.17 16 40 H 0.04 0.80 7.95 -51.93 -0.41 0.38 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -37.44 340.81 -11.08 -48.53 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.76 Total: -3.49 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: -6.05 Total: 19.08 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -0.47 Total: -75.69 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.44 -11.08 -48.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049123736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.217 kcal (2) G-P(sol) polarization free energy of solvation -37.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds