Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47040 * 240.00000 * 3 2 1 5 5 H 1.48504 * 109.46623 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46967 * 119.99760 * 3 2 1 7 7 C 1.38811 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00348 * 164.45588 * 7 2 1 9 9 N 1.36940 * 119.99960 * 344.44947 * 7 2 1 10 10 C 1.47083 * 121.01272 * 155.89459 * 9 7 2 11 11 C 1.53248 * 109.22672 * 116.45166 * 10 9 7 12 12 N 1.46551 * 109.25488 * 45.96207 * 11 10 9 13 13 N 1.39739 * 127.32619 * 161.46718 * 12 11 10 14 14 C 1.31023 * 108.17623 * 179.23466 * 13 12 11 15 15 C 1.40079 * 108.25039 * 0.52915 * 14 13 12 16 16 C 1.50692 * 126.11973 * 179.97438 * 15 14 13 17 17 N 1.46508 * 109.47007 * 259.68611 * 16 15 14 18 18 C 1.34777 * 119.99778 * 180.02562 * 17 16 15 19 19 O 1.21555 * 120.00224 * 0.02562 * 18 17 16 20 20 C 1.47829 * 119.99703 * 179.97438 * 18 17 16 21 21 C 1.39953 * 120.94118 * 179.97438 * 20 18 17 22 22 N 1.32143 * 118.92646 * 179.97438 * 21 20 18 23 23 C 1.31869 * 120.96688 * 0.02562 * 22 21 20 24 24 N 1.31869 * 122.09615 * 359.97438 * 23 22 21 25 25 C 1.32144 * 120.96539 * 0.02562 * 24 23 22 26 26 C 1.34641 * 107.75000 * 359.67148 * 15 14 13 27 27 C 1.47498 * 121.01114 * 335.90123 * 9 7 2 28 28 H 0.97003 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.50837 * 356.52473 * 10 9 7 30 30 H 1.09003 * 109.50890 * 236.37477 * 10 9 7 31 31 H 1.09008 * 109.50849 * 286.02564 * 11 10 9 32 32 H 1.09006 * 109.50641 * 165.89685 * 11 10 9 33 33 H 1.07992 * 125.87302 * 180.37396 * 14 13 12 34 34 H 1.08999 * 109.47110 * 139.69149 * 16 15 14 35 35 H 1.08997 * 109.47972 * 19.68719 * 16 15 14 36 36 H 0.96996 * 119.99785 * 0.02562 * 17 16 15 37 37 H 1.08006 * 120.53423 * 359.96553 * 21 20 18 38 38 H 1.08004 * 118.94915 * 179.71593 * 23 22 21 39 39 H 1.08003 * 120.53533 * 179.97438 * 25 24 23 40 40 H 1.08998 * 109.95058 * 103.59378 * 27 9 7 41 41 H 1.09006 * 109.94969 * 342.33710 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0606 -1.2191 -0.2512 9 7 1.3632 -2.3665 0.3169 10 6 1.8638 -3.6654 -0.1580 11 6 2.2727 -4.5197 1.0468 12 7 1.2236 -4.4492 2.0676 13 7 1.0188 -5.3284 3.1343 14 6 -0.0126 -4.9038 3.8217 15 6 -0.5041 -3.7460 3.2051 16 6 -1.6844 -2.9285 3.6629 17 7 -2.8571 -3.2677 2.8529 18 6 -4.0356 -2.6562 3.0843 19 8 -4.1255 -1.8229 3.9647 20 6 -5.2187 -2.9981 2.2665 21 6 -6.4522 -2.3757 2.4901 22 7 -7.4835 -2.7113 1.7352 23 6 -7.3623 -3.6171 0.7845 24 7 -6.2194 -4.2277 0.5401 25 6 -5.1371 -3.9532 1.2469 26 6 0.2709 -3.4906 2.1341 27 6 0.1428 -2.3562 1.1453 28 1 -0.4850 0.8401 0.0004 29 1 2.7282 -3.5085 -0.8033 30 1 1.0792 -4.1758 -0.7167 31 1 3.2084 -4.1425 1.4597 32 1 2.4045 -5.5547 0.7311 33 1 -0.4161 -5.3681 4.7093 34 1 -1.4583 -1.8683 3.5487 35 1 -1.8918 -3.1448 4.7109 36 1 -2.7852 -3.9323 2.1501 37 1 -6.5594 -1.6333 3.2672 38 1 -8.2278 -3.8699 0.1899 39 1 -4.2047 -4.4577 1.0410 40 1 -0.7346 -2.5080 0.5167 41 1 0.0616 -1.4076 1.6761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069858521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = 124.058724 kcal Electronic energy + Delta-G solvation = -27436.827027 eV Core-core repulsion = 23547.698732 eV Total energy + Delta-G solvation = -3889.128295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35704 -41.03794 -39.16824 -36.37818 -35.06293 -33.98807 -33.12205 -32.52211 -31.23056 -30.28567 -28.90653 -26.36945 -25.57955 -24.85381 -24.25945 -23.49426 -21.84505 -20.85799 -20.25154 -18.67046 -18.15247 -17.81370 -17.36485 -16.78070 -16.04991 -15.69422 -15.46945 -15.20232 -14.77566 -14.50894 -14.29938 -13.95319 -13.86235 -13.73657 -13.64020 -13.37790 -13.24766 -12.71190 -12.54821 -11.82214 -11.77072 -11.69316 -11.37460 -11.12723 -11.04322 -10.91673 -10.79049 -10.28342 -10.26410 -10.13766 -10.00361 -9.93754 -9.54592 -8.97783 -8.92687 -8.62331 -8.03002 -7.14189 -6.06516 -3.49363 0.24534 0.79393 2.33302 2.76647 2.82212 2.93684 3.26444 3.34188 3.34230 3.49471 3.64835 3.80672 3.92025 4.23536 4.27440 4.56151 4.79333 4.88901 5.00624 5.06771 5.14834 5.30362 5.42187 5.48619 5.49860 5.55060 5.65285 5.77731 6.01314 6.02462 6.16496 6.29014 6.36103 6.43787 6.49355 6.59983 6.83097 7.00080 7.06971 7.49809 7.52128 7.54581 7.73983 8.03855 8.15852 8.16987 8.86822 9.49302 10.01424 11.04444 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003919 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.477665 B = 7143.217298 C = 8495.960114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.010 3.990 3 Si 0.909 3.091 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.129 3.871 11 C 0.113 3.887 12 N -0.357 5.357 13 N -0.317 5.317 14 C 0.057 3.943 15 C -0.292 4.292 16 C 0.210 3.790 17 N -0.709 5.709 18 C 0.566 3.434 19 O -0.534 6.534 20 C -0.234 4.234 21 C 0.206 3.794 22 N -0.524 5.524 23 C 0.309 3.691 24 N -0.522 5.522 25 C 0.185 3.815 26 C 0.121 3.879 27 C 0.230 3.770 28 H 0.260 0.740 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.398 0.602 37 H 0.182 0.818 38 H 0.201 0.799 39 H 0.172 0.828 40 H 0.056 0.944 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -9.258 3.058 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.738 3.262 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.318 5.318 10 C 0.000 4.000 11 C -0.011 4.011 12 N -0.138 5.138 13 N -0.137 5.137 14 C -0.130 4.130 15 C -0.305 4.305 16 C 0.087 3.913 17 N -0.360 5.360 18 C 0.351 3.649 19 O -0.412 6.412 20 C -0.241 4.241 21 C 0.039 3.961 22 N -0.237 5.237 23 C 0.022 3.978 24 N -0.235 5.235 25 C 0.018 3.982 26 C -0.011 4.011 27 C 0.103 3.897 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.193 0.807 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.199 0.801 38 H 0.217 0.783 39 H 0.189 0.811 40 H 0.074 0.926 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.907 -9.644 2.901 12.805 hybrid contribution 0.717 1.217 0.178 1.423 sum -7.191 -8.428 3.079 11.498 Atomic orbital electron populations 1.69921 1.05248 1.26444 1.53094 1.25027 0.95449 0.98594 0.99887 0.86269 0.78917 0.82735 0.78275 1.20673 1.21325 1.20776 1.19123 0.92491 0.83914 1.43937 0.90870 1.44189 1.29226 1.01396 1.57038 1.21277 0.99319 0.87349 0.92011 1.22567 0.88747 1.01573 0.88168 1.48516 1.24040 1.19331 1.21887 1.77190 1.20014 1.16461 0.99995 1.23690 0.94511 0.95212 0.99539 1.19395 1.05246 1.03508 1.02304 1.19380 0.80055 0.98285 0.93545 1.46134 1.09378 1.42657 1.37801 1.17712 0.82443 0.81478 0.83267 1.90794 1.84710 1.32842 1.32816 1.21900 0.97772 1.02815 1.01641 1.23525 0.86029 0.92893 0.93610 1.68565 1.32714 1.15539 1.06872 1.25245 0.95118 0.86575 0.90836 1.68471 1.00100 1.27162 1.27767 1.23513 0.97274 0.90181 0.87264 1.22610 0.88429 0.92786 0.97245 1.19934 0.89346 0.92273 0.88131 0.92967 0.89677 0.94585 0.90531 0.90121 0.80683 0.90387 0.90863 0.76673 0.80114 0.78302 0.81138 0.92620 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 11.07 55.49 0.61 -23.44 16 2 C 0.01 0.25 5.00 -17.43 -0.09 0.17 16 3 Si 0.91 20.47 29.58 -169.99 -5.03 15.44 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.27 -6.64 9.66 -15.06 -0.15 -6.79 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -13.41 3.01 -172.98 -0.52 -13.93 16 10 C 0.13 2.31 6.49 -3.60 -0.02 2.29 16 11 C 0.11 1.84 7.44 -3.89 -0.03 1.81 16 12 N -0.36 -6.51 4.03 -56.93 -0.23 -6.74 16 13 N -0.32 -5.56 12.61 30.70 0.39 -5.17 16 14 C 0.06 0.87 11.97 -17.21 -0.21 0.67 16 15 C -0.29 -4.69 5.46 -105.21 -0.57 -5.26 16 16 C 0.21 3.08 5.95 -5.19 -0.03 3.05 16 17 N -0.71 -9.31 5.51 -62.44 -0.34 -9.65 16 18 C 0.57 7.94 7.79 -12.34 -0.10 7.85 16 19 O -0.53 -9.09 16.45 5.32 0.09 -9.00 16 20 C -0.23 -2.82 5.91 -104.69 -0.62 -3.44 16 21 C 0.21 2.41 10.88 -16.78 -0.18 2.23 16 22 N -0.52 -5.97 10.42 -14.24 -0.15 -6.12 16 23 C 0.31 3.13 12.27 -92.03 -1.13 2.00 16 24 N -0.52 -5.88 10.42 -14.24 -0.15 -6.03 16 25 C 0.18 2.02 10.81 -16.78 -0.18 1.84 16 26 C 0.12 2.26 6.71 -82.17 -0.55 1.71 16 27 C 0.23 4.94 5.11 -4.48 -0.02 4.92 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.08 1.41 7.94 -51.93 -0.41 1.00 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 4.58 6.60 -40.82 -0.27 4.31 16 37 H 0.18 1.92 7.75 -52.48 -0.41 1.52 16 38 H 0.20 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.17 1.49 6.54 -52.48 -0.34 1.15 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.11 2.67 6.46 -51.93 -0.34 2.33 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -31.02 352.32 -8.60 -39.62 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.70 Total: 6.66 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -3.88 Total: 13.04 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.39 Total: -71.07 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.02 -8.60 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069858521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.679 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds