Wall clock time and date at job start Tue Mar 31 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 115.54785 * 2 1 4 4 C 1.52995 * 117.49513 * 214.28990 * 2 1 3 5 5 C 1.53002 * 60.00190 * 252.51072 * 4 2 1 6 6 H 1.08994 * 117.51467 * 107.48329 * 5 4 2 7 7 C 1.50702 * 117.49942 * 252.51273 * 5 4 2 8 8 O 1.21283 * 119.99904 * 68.62328 * 7 5 4 9 9 N 1.34773 * 119.99781 * 248.62070 * 7 5 4 10 10 C 1.45551 * 117.27645 * 359.97438 * 9 7 5 11 11 C 1.53346 * 109.25509 * 149.90751 * 10 9 7 12 12 N 1.46778 * 107.22370 * 53.84015 * 11 10 9 13 13 C 1.36933 * 119.82198 * 122.79191 * 12 11 10 14 14 H 1.08005 * 119.99671 * 208.43358 * 13 12 11 15 15 C 1.38806 * 120.00361 * 28.43174 * 13 12 11 16 16 N 1.31624 * 120.00229 * 215.84785 * 15 13 12 17 17 Si 1.86797 * 120.00131 * 35.85108 * 15 13 12 18 18 H 1.48500 * 109.47213 * 88.87192 * 17 15 13 19 19 H 1.48498 * 109.47131 * 208.87513 * 17 15 13 20 20 H 1.48507 * 109.46896 * 328.87249 * 17 15 13 21 21 C 1.45464 * 120.34961 * 302.76643 * 12 11 10 22 22 H 1.09005 * 106.84168 * 145.57600 * 21 12 11 23 23 C 1.54518 * 109.56542 * 260.90402 * 21 12 11 24 24 S 1.84026 * 102.38453 * 102.52998 * 23 21 12 25 25 O 1.42094 * 109.87603 * 148.98471 * 24 23 21 26 26 O 1.42103 * 109.87264 * 283.51020 * 24 23 21 27 27 C 1.84034 * 93.82674 * 36.24464 * 24 23 21 28 28 C 1.44278 * 117.26901 * 180.02562 * 9 7 5 29 29 H 1.09004 * 105.99411 * 63.23602 * 28 9 7 30 30 H 1.09003 * 109.47146 * 274.33457 * 1 2 3 31 31 H 1.08998 * 109.47095 * 34.32690 * 1 2 3 32 32 H 1.08991 * 109.47332 * 154.33071 * 1 2 3 33 33 H 1.09000 * 117.49956 * 145.02269 * 4 2 1 34 34 H 1.08993 * 117.50427 * 0.02562 * 4 2 1 35 35 H 1.09001 * 109.50190 * 29.97837 * 10 9 7 36 36 H 1.08994 * 109.50893 * 269.83983 * 10 9 7 37 37 H 1.09007 * 109.90595 * 294.40806 * 11 10 9 38 38 H 1.09001 * 109.90584 * 173.27029 * 11 10 9 39 39 H 0.96993 * 119.99965 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.82484 * 344.30290 * 23 21 12 41 41 H 1.08997 * 110.98980 * 220.83344 * 23 21 12 42 42 H 1.09005 * 110.82582 * 81.81332 * 27 24 23 43 43 H 1.09001 * 110.82949 * 205.37603 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8578 1.2692 7 6 3.5293 -0.7807 1.4611 8 8 3.9718 0.3470 1.4011 9 7 4.1937 -1.7296 2.1499 10 6 3.6089 -3.0620 2.1835 11 6 4.7288 -4.1030 2.3010 12 7 5.5440 -3.7349 3.4648 13 6 5.7205 -4.6324 4.4838 14 1 5.8933 -4.2798 5.4900 15 6 5.6774 -5.9952 4.2238 16 7 5.1532 -6.8176 5.1077 17 14 6.3633 -6.6621 2.6194 18 1 7.8068 -6.9676 2.7872 19 1 5.6350 -7.9014 2.2469 20 1 6.1933 -5.6472 1.5486 21 6 6.1657 -2.4220 3.5410 22 1 6.1591 -2.1300 4.5912 23 6 7.6477 -2.5258 3.1161 24 16 7.6146 -1.8570 1.4020 25 8 8.8495 -1.2183 1.1087 26 8 7.0819 -2.8301 0.5140 27 6 6.3330 -0.5938 1.7878 28 6 5.4247 -1.3394 2.7934 29 1 5.1507 -0.5911 3.5372 30 1 -0.3633 0.0777 1.0247 31 1 -0.3633 0.8487 -0.5795 32 1 -0.3633 -0.9262 -0.4451 33 1 3.1715 -0.8757 -1.2680 34 1 1.6112 -1.8587 -1.2679 35 1 3.0456 -3.2354 1.2666 36 1 2.9428 -3.1457 3.0421 37 1 5.3420 -4.0917 1.3998 38 1 4.3001 -5.0945 2.4468 39 1 5.1234 -7.7699 4.9261 40 1 7.9804 -3.5638 3.1207 41 1 8.2817 -1.9147 3.7584 42 1 6.7821 0.2854 2.2499 43 1 5.7762 -0.3203 0.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094652521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:16 Heat of formation + Delta-G solvation = -18.980928 kcal Electronic energy + Delta-G solvation = -28242.447705 eV Core-core repulsion = 24417.975194 eV Total energy + Delta-G solvation = -3824.472511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.79215 -38.39428 -36.78015 -36.61510 -35.71037 -34.54296 -33.91095 -31.71710 -29.31468 -28.54298 -28.15694 -25.88579 -24.12977 -23.26836 -22.58788 -21.00124 -19.71847 -18.76904 -18.48473 -17.56066 -16.81345 -16.60803 -16.36854 -16.03581 -15.55259 -14.99174 -14.83043 -14.76411 -14.42397 -14.02768 -13.65591 -13.41456 -13.11193 -13.04475 -12.92330 -12.67494 -12.39896 -12.22734 -12.12783 -11.98867 -11.84870 -11.75861 -11.63194 -11.56340 -11.26865 -10.77983 -10.53405 -10.49799 -10.41327 -10.29641 -10.12424 -9.91465 -9.54490 -9.47174 -8.73411 -8.42142 -7.30757 -6.26705 -3.53929 0.34538 2.46679 2.72585 2.93872 3.28709 3.41297 3.51386 3.70426 3.81665 4.19496 4.31048 4.39497 4.52936 4.58490 4.64975 4.69794 4.72046 4.92344 5.07176 5.10108 5.15681 5.29647 5.37346 5.48242 5.56722 5.58693 5.60514 5.64685 5.76944 5.79729 5.85811 5.87837 5.90472 6.12023 6.16495 6.28180 6.37966 6.73788 6.78907 7.40957 7.70676 8.07412 8.21626 8.68798 9.46526 9.78242 10.86286 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005996 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.768926 B = 4668.604819 C = 6009.737126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.148 4.148 5 C -0.190 4.190 6 H 0.127 0.873 7 C 0.534 3.466 8 O -0.542 6.542 9 N -0.580 5.580 10 C 0.086 3.914 11 C 0.112 3.888 12 N -0.582 5.582 13 C -0.287 4.287 14 H 0.086 0.914 15 C 0.053 3.947 16 N -0.871 5.871 17 Si 0.814 3.186 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.238 1.238 21 C 0.178 3.822 22 H 0.088 0.912 23 C -0.582 4.582 24 S 2.342 3.658 25 O -0.954 6.954 26 O -0.925 6.925 27 C -0.582 4.582 28 C 0.158 3.842 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.267 0.733 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 10.944 -7.670 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.134 0.866 4 C -0.186 4.186 5 C -0.211 4.211 6 H 0.145 0.855 7 C 0.323 3.677 8 O -0.421 6.421 9 N -0.311 5.311 10 C -0.038 4.038 11 C -0.013 4.013 12 N -0.303 5.303 13 C -0.414 4.414 14 H 0.104 0.896 15 C -0.151 4.151 16 N -0.509 5.509 17 Si 0.639 3.361 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.162 1.162 21 C 0.067 3.933 22 H 0.105 0.895 23 C -0.717 4.717 24 S 2.527 3.473 25 O -0.951 6.951 26 O -0.922 6.922 27 C -0.712 4.712 28 C 0.052 3.948 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.197 11.047 -8.436 14.839 hybrid contribution 0.218 -0.589 0.066 0.632 sum -4.979 10.458 -8.370 14.290 Atomic orbital electron populations 1.21392 0.92308 1.02120 1.02167 1.22373 0.95141 0.95021 1.01696 0.86627 1.23108 1.03118 1.01472 0.90888 1.22353 0.97772 1.05128 0.95816 0.85479 1.19820 0.84883 0.84471 0.78545 1.90634 1.68403 1.21124 1.61961 1.46881 1.21492 1.11359 1.51356 1.22342 0.97872 0.81704 1.01859 1.22094 0.91422 0.96645 0.91152 1.43997 1.53718 1.11269 1.21339 1.18650 1.49408 0.85701 0.87639 0.89645 1.25188 0.97694 0.95737 0.96475 1.70056 1.39404 1.04218 1.37231 0.87978 0.80827 0.79935 0.87349 1.21318 1.21612 1.16159 1.20178 0.86081 0.86851 1.00191 0.89467 1.31214 1.06802 1.13523 1.20185 1.10380 0.77332 0.78894 0.80678 1.93557 1.41199 1.75830 1.84470 1.93616 1.79791 1.57459 1.61297 1.30934 1.15499 1.14425 1.10359 1.20300 0.85124 0.95893 0.93519 0.89662 0.91950 0.91846 0.92307 0.88321 0.87671 0.90260 0.90850 0.91452 0.89444 0.92338 0.83753 0.84997 0.84004 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.19 37.16 0.38 -0.60 16 2 C -0.12 -1.27 5.92 -90.62 -0.54 -1.81 16 3 H 0.12 1.33 7.67 -51.93 -0.40 0.94 16 4 C -0.15 -1.51 9.88 -26.73 -0.26 -1.78 16 5 C -0.19 -2.23 4.34 -91.77 -0.40 -2.63 16 6 H 0.13 1.32 7.09 -51.93 -0.37 0.96 16 7 C 0.53 7.99 6.72 -10.99 -0.07 7.91 16 8 O -0.54 -9.08 13.71 5.55 0.08 -9.00 16 9 N -0.58 -9.05 3.03 -168.41 -0.51 -9.56 16 10 C 0.09 1.34 5.80 -4.37 -0.03 1.32 16 11 C 0.11 2.19 4.46 -3.71 -0.02 2.17 16 12 N -0.58 -12.01 2.25 -166.23 -0.37 -12.38 16 13 C -0.29 -7.05 9.62 -15.06 -0.14 -7.19 16 14 H 0.09 2.25 8.04 -52.48 -0.42 1.82 16 15 C 0.05 1.36 4.80 -17.43 -0.08 1.28 16 16 N -0.87 -24.20 13.97 55.49 0.78 -23.42 16 17 Si 0.81 19.38 26.57 -169.99 -4.52 14.87 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.24 -5.44 4.79 56.52 0.27 -5.17 16 21 C 0.18 3.02 2.73 -68.70 -0.19 2.83 16 22 H 0.09 1.42 7.89 -51.93 -0.41 1.02 16 23 C -0.58 -9.09 7.09 37.95 0.27 -8.82 16 24 S 2.34 38.11 6.08 -107.50 -0.65 37.46 16 25 O -0.95 -17.39 18.17 -57.66 -1.05 -18.43 16 26 O -0.92 -18.03 16.54 -57.66 -0.95 -18.98 16 27 C -0.58 -8.25 6.15 38.03 0.23 -8.01 16 28 C 0.16 2.44 2.56 -69.24 -0.18 2.26 16 29 H 0.09 1.23 8.04 -51.93 -0.42 0.82 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.08 1.03 6.33 -51.93 -0.33 0.70 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.38 5.12 -51.93 -0.27 1.12 16 38 H 0.09 1.80 5.56 -51.93 -0.29 1.51 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.14 2.53 7.90 -51.93 -0.41 2.12 16 41 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.14 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.15 2.20 5.68 -51.93 -0.29 1.91 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -32.52 342.02 -9.31 -41.83 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.23 Total: 5.53 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.03 Total: -13.06 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.11 Total: -45.37 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.92 Total: -46.42 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.52 Total: 14.87 kcal Atomic # 16 Polarization: 38.11 SS G_CDS: -0.65 Total: 37.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.52 -9.31 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094652521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.850 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds