Wall clock time and date at job start Tue Mar 31 2020 04:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99906 * 2 1 4 4 N 1.46501 * 109.47216 * 125.00278 * 3 2 1 5 5 C 1.46815 * 124.36127 * 89.99736 * 4 3 2 6 6 C 1.54580 * 105.49471 * 163.10060 * 5 4 3 7 7 C 1.54149 * 101.65813 * 24.99865 * 6 5 4 8 8 C 1.52471 * 110.08429 * 94.63747 * 7 6 5 9 9 C 1.53131 * 109.61361 * 181.77219 * 8 7 6 10 10 C 1.53182 * 109.29530 * 299.52482 * 9 8 7 11 11 N 1.46925 * 108.98838 * 55.02340 * 10 9 8 12 12 S 1.65603 * 120.68149 * 126.01397 * 11 10 9 13 13 O 1.42098 * 106.39962 * 203.53872 * 12 11 10 14 14 O 1.42096 * 106.40036 * 336.45330 * 12 11 10 15 15 C 1.76192 * 107.21989 * 89.99737 * 12 11 10 16 16 H 1.08005 * 120.00308 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99999 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00080 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00021 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47394 * 59.99726 * 19 17 15 21 21 H 1.48492 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47025 * 300.00147 * 19 17 15 23 23 C 1.47068 * 118.62218 * 306.17333 * 11 10 9 24 24 C 1.34572 * 124.36254 * 270.02747 * 4 3 2 25 25 O 1.21287 * 125.02411 * 0.64052 * 24 4 3 26 26 H 1.08000 * 119.99736 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99807 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99736 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47341 * 5.00380 * 3 2 1 30 30 H 1.08993 * 109.47211 * 244.99918 * 3 2 1 31 31 H 1.08997 * 110.24406 * 44.08955 * 5 4 3 32 32 H 1.09004 * 110.31788 * 282.13917 * 5 4 3 33 33 H 1.09001 * 110.99249 * 266.91034 * 6 5 4 34 34 H 1.09006 * 110.99690 * 143.09281 * 6 5 4 35 35 H 1.08999 * 109.44629 * 61.73187 * 8 7 6 36 36 H 1.08993 * 109.44948 * 301.81929 * 8 7 6 37 37 H 1.09008 * 109.50152 * 179.58254 * 9 8 7 38 38 H 1.08997 * 109.50019 * 59.47651 * 9 8 7 39 39 H 1.09002 * 109.56850 * 174.90586 * 10 9 8 40 40 H 1.09004 * 109.56882 * 295.14169 * 10 9 8 41 41 H 0.97000 * 119.99757 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.48010 * 292.75401 * 23 11 10 43 43 H 1.08998 * 109.70273 * 172.46805 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3798 0.8506 1.0761 6 6 5.0785 1.4612 2.3124 7 6 3.8867 1.6884 3.2633 8 6 3.7371 0.5013 4.2083 9 6 2.5244 0.7179 5.1178 10 6 2.7314 1.9920 5.9426 11 7 2.9979 3.1133 5.0313 12 16 2.0895 4.4960 5.1046 13 8 2.1906 5.1106 3.8274 14 8 0.8498 4.1308 5.6953 15 6 2.8827 5.5815 6.2433 16 1 3.7938 5.2755 6.7361 17 6 2.3404 6.8218 6.5054 18 7 1.2314 7.1948 5.9050 19 14 3.1818 7.9730 7.7122 20 1 4.5544 8.2756 7.2329 21 1 2.4046 9.2339 7.8175 22 1 3.2552 7.3244 9.0461 23 6 4.0857 2.9808 4.0505 24 6 2.6880 1.8002 2.3553 25 8 1.6080 2.2467 2.6800 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 4.8624 1.1951 0.1616 32 1 4.4048 -0.2379 1.1282 33 1 5.5627 2.4049 2.0610 34 1 5.7934 0.7600 2.7431 35 1 4.6358 0.4073 4.8180 36 1 3.5966 -0.4099 3.6269 37 1 2.4148 -0.1352 5.7875 38 1 1.6264 0.8205 4.5086 39 1 1.8335 2.2000 6.5246 40 1 3.5792 1.8582 6.6145 41 1 0.8497 8.0672 6.0897 42 1 5.0427 2.9476 4.5714 43 1 4.0706 3.8304 3.3679 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192953581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:01 Heat of formation + Delta-G solvation = -129.722227 kcal Electronic energy + Delta-G solvation = -28053.423119 eV Core-core repulsion = 24224.148504 eV Total energy + Delta-G solvation = -3829.274614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05984 -38.53794 -37.50077 -37.41902 -36.06870 -35.67958 -35.18875 -33.19884 -32.56669 -29.65548 -28.29156 -27.52744 -25.70154 -25.15331 -22.62469 -22.34415 -20.79882 -20.79009 -19.85918 -18.82191 -18.33327 -17.68630 -17.14274 -17.03815 -16.69186 -16.14337 -15.89458 -15.69674 -15.30355 -15.13198 -14.85117 -14.73710 -14.65266 -14.18106 -13.98957 -13.89517 -13.41907 -13.33474 -13.27788 -13.04816 -13.00286 -12.63416 -12.51909 -12.46058 -12.44506 -12.32705 -12.28101 -12.07936 -11.94292 -11.43049 -11.31608 -11.25776 -10.97660 -10.70427 -10.29863 -9.69295 -9.58581 -8.75335 -7.53203 0.35797 1.16527 1.30459 1.34529 1.47786 1.68691 2.19652 2.28253 2.55007 2.85437 3.37031 3.53567 3.75754 3.89561 3.91708 4.01305 4.10861 4.16776 4.19556 4.30255 4.36740 4.37885 4.51595 4.56172 4.64119 4.70685 4.74671 4.80638 4.84752 4.92744 4.96005 5.00425 5.13753 5.16438 5.18897 5.28285 5.41260 5.46126 5.56555 5.65609 5.80167 5.86806 6.07222 6.22072 6.73432 7.32171 8.19330 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.004362 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.047262 B = 6417.826574 C = 6774.834582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.172 4.172 3 C 0.145 3.855 4 N -0.623 5.623 5 C 0.100 3.900 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.081 4.081 9 C -0.138 4.138 10 C 0.117 3.883 11 N -1.001 6.001 12 S 2.721 3.279 13 O -1.045 7.045 14 O -1.054 7.054 15 C -1.047 5.047 16 H 0.124 0.876 17 C 0.063 3.937 18 N -0.901 5.901 19 Si 0.997 3.003 20 H -0.244 1.244 21 H -0.263 1.263 22 H -0.246 1.246 23 C 0.136 3.864 24 C 0.506 3.494 25 O -0.570 6.570 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.046 0.954 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.298 0.702 42 H 0.113 0.887 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.106 -18.278 -8.229 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.191 4.191 3 C 0.023 3.977 4 N -0.356 5.356 5 C -0.021 4.021 6 C -0.152 4.152 7 C -0.112 4.112 8 C -0.119 4.119 9 C -0.177 4.177 10 C -0.008 4.008 11 N -0.839 5.839 12 S 2.824 3.176 13 O -1.035 7.035 14 O -1.044 7.044 15 C -1.180 5.180 16 H 0.142 0.858 17 C -0.149 4.149 18 N -0.532 5.532 19 Si 0.813 3.187 20 H -0.167 1.167 21 H -0.187 1.187 22 H -0.169 1.169 23 C 0.010 3.990 24 C 0.295 3.705 25 O -0.448 6.448 26 H 0.096 0.904 27 H 0.136 0.864 28 H 0.153 0.847 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.541 -17.781 -8.692 23.431 hybrid contribution -0.597 1.334 0.642 1.596 sum 11.945 -16.447 -8.050 21.863 Atomic orbital electron populations 1.24039 0.96559 1.02154 0.99545 1.23367 0.96114 0.98969 1.00677 1.20545 0.92200 0.95383 0.89530 1.48528 1.14844 1.62152 1.10124 1.22455 0.78659 1.00554 1.00404 1.22810 0.95295 1.04127 0.93012 1.21537 0.95084 0.98414 0.96212 1.21346 0.99394 0.94847 0.96275 1.21969 0.98941 0.97412 0.99363 1.21474 1.01608 0.85958 0.91740 1.57496 1.49289 1.30770 1.46326 0.99866 0.72503 0.71872 0.73366 1.93241 1.87517 1.77013 1.45721 1.93237 1.46590 1.84442 1.80140 1.31110 1.24878 1.16255 1.45783 0.85802 1.26234 0.93456 0.99187 0.96046 1.70046 1.19503 1.23406 1.40289 0.85092 0.79353 0.76249 0.77988 1.16711 1.18740 1.16949 1.21388 0.90862 0.96449 0.90280 1.21393 0.89286 0.75807 0.84054 1.90739 1.28674 1.46699 1.78718 0.90369 0.86418 0.84706 0.93578 0.86303 0.87979 0.88320 0.89302 0.84355 0.86570 0.89439 0.87791 0.95075 0.92664 0.88259 0.89160 0.86899 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.32 14.32 67.78 0.97 -3.34 16 2 C -0.17 -3.67 9.85 25.64 0.25 -3.42 16 3 C 0.14 3.52 6.37 85.63 0.55 4.06 16 4 N -0.62 -16.03 2.92 -822.43 -2.40 -18.43 16 5 C 0.10 1.35 7.36 86.86 0.64 1.98 16 6 C -0.11 -1.61 6.21 31.52 0.20 -1.42 16 7 C -0.11 -2.86 0.55 -52.81 -0.03 -2.89 16 8 C -0.08 -1.68 4.59 30.46 0.14 -1.54 16 9 C -0.14 -4.11 5.83 30.70 0.18 -3.93 16 10 C 0.12 4.32 6.45 86.36 0.56 4.87 16 11 N -1.00 -44.94 2.59 -513.75 -1.33 -46.27 16 12 S 2.72 167.00 5.01 -56.49 -0.28 166.71 16 13 O -1.04 -70.80 16.61 -128.00 -2.13 -72.93 16 14 O -1.05 -72.63 16.61 -128.00 -2.13 -74.76 16 15 C -1.05 -62.42 9.75 67.73 0.66 -61.76 16 16 H 0.12 6.50 7.81 -2.91 -0.02 6.48 16 17 C 0.06 3.73 5.46 84.66 0.46 4.19 16 18 N -0.90 -58.34 13.19 21.45 0.28 -58.06 16 19 Si 1.00 43.20 29.54 68.60 2.03 45.22 16 20 H -0.24 -9.69 7.11 99.48 0.71 -8.99 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 23 C 0.14 4.75 5.03 86.15 0.43 5.18 16 24 C 0.51 18.35 6.24 87.72 0.55 18.89 16 25 O -0.57 -28.81 15.47 -3.05 -0.05 -28.86 16 26 H 0.08 2.13 7.84 -2.91 -0.02 2.11 16 27 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.05 1.49 7.59 -2.39 -0.02 1.47 16 30 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.09 1.27 7.88 -2.39 -0.02 1.25 16 34 H 0.14 0.76 7.87 -2.38 -0.02 0.75 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.03 1.21 6.46 -2.39 -0.02 1.19 16 39 H 0.05 2.40 6.92 -2.39 -0.02 2.38 16 40 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 41 H 0.30 17.30 8.31 -92.71 -0.77 16.53 16 42 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.06 2.41 6.91 -2.39 -0.02 2.39 16 Total: -1.00 -101.96 360.14 0.55 -101.41 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.00 Total: 25.06 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 5.55 Total: -39.11 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -3.45 Total: -122.76 kcal Atomic # 8 Polarization: -172.25 SS G_CDS: -4.30 Total: -176.55 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 167.00 SS G_CDS: -0.28 Total: 166.71 kcal Total: -101.96 0.55 -101.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.308 kcal (2) G-P(sol) polarization free energy of solvation -101.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds