Wall clock time and date at job start Tue Mar 31 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47218 * 2 1 4 4 C 1.46496 * 120.00509 * 275.77652 * 3 2 1 5 5 C 1.50703 * 109.47125 * 275.00274 * 4 3 2 6 6 H 1.07999 * 120.00103 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99722 * 179.97438 * 5 4 3 8 8 N 1.31506 * 120.00093 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47569 * 89.99802 * 9 7 5 11 11 H 1.48504 * 109.46727 * 209.99728 * 9 7 5 12 12 H 1.48501 * 109.46956 * 329.99125 * 9 7 5 13 13 S 1.65601 * 119.99578 * 95.78138 * 3 2 1 14 14 O 1.42097 * 106.40241 * 337.88383 * 13 3 2 15 15 O 1.42104 * 106.40082 * 204.96599 * 13 3 2 16 16 N 1.65604 * 107.22210 * 91.42572 * 13 3 2 17 17 C 1.46493 * 119.99823 * 67.90242 * 16 13 3 18 18 H 1.09002 * 109.75129 * 338.11865 * 17 16 13 19 19 C 1.53377 * 109.71262 * 217.48514 * 17 16 13 20 20 C 1.53026 * 109.75200 * 189.66571 * 19 17 16 21 21 C 1.53387 * 109.72303 * 71.71331 * 20 19 17 22 22 C 1.50879 * 108.19432 * 309.44573 * 21 20 19 23 23 C 1.34569 * 128.32787 * 196.67788 * 22 21 20 24 24 N 1.35202 * 107.61821 * 179.85736 * 23 22 21 25 25 H 0.96997 * 126.00313 * 180.02562 * 24 23 22 26 26 N 1.40317 * 107.99164 * 0.20713 * 24 23 22 27 27 C 1.30132 * 108.12265 * 359.73274 * 26 24 23 28 28 H 1.08992 * 109.47685 * 185.01549 * 1 2 3 29 29 H 1.09007 * 109.47074 * 305.01726 * 1 2 3 30 30 H 1.09009 * 109.47300 * 65.01247 * 1 2 3 31 31 H 1.09000 * 109.46815 * 240.00363 * 2 1 3 32 32 H 1.08994 * 109.47420 * 120.00691 * 2 1 3 33 33 H 1.09004 * 109.46561 * 35.00105 * 4 3 2 34 34 H 1.09005 * 109.47367 * 155.00160 * 4 3 2 35 35 H 0.96995 * 120.00683 * 180.02562 * 8 7 5 36 36 H 0.96997 * 120.00115 * 247.91019 * 16 13 3 37 37 H 1.09005 * 109.41824 * 69.58099 * 19 17 16 38 38 H 1.09003 * 109.37715 * 309.72598 * 19 17 16 39 39 H 1.09002 * 109.42674 * 311.63086 * 20 19 17 40 40 H 1.08996 * 109.38492 * 191.76722 * 20 19 17 41 41 H 1.09003 * 109.71198 * 189.77110 * 21 20 19 42 42 H 1.08997 * 109.75499 * 69.14754 * 21 20 19 43 43 H 1.07997 * 126.18826 * 359.82580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1421 2.1145 -1.2622 5 6 3.4706 1.7974 -1.8991 6 1 4.1542 1.1173 -1.4126 7 6 3.8130 2.3747 -3.1035 8 7 4.9725 2.0985 -3.6591 9 14 2.6304 3.5504 -3.9453 10 1 2.9006 4.9369 -3.4873 11 1 2.8161 3.4701 -5.4165 12 1 1.2343 3.1787 -3.6016 13 16 2.4305 2.1136 1.4269 14 8 1.7444 1.4089 2.4525 15 8 2.2888 3.5117 1.2159 16 7 4.0453 1.8388 1.6705 17 6 5.0354 2.4607 0.7879 18 1 4.5674 2.7295 -0.1591 19 6 6.1900 1.4830 0.5356 20 6 7.3322 2.2058 -0.1817 21 6 8.0261 3.1691 0.7896 22 6 6.9670 4.0181 1.4482 23 6 7.1222 5.1740 2.1197 24 7 5.8984 5.5765 2.5299 25 1 5.7028 6.3794 3.0378 26 7 4.9615 4.6266 2.0953 27 6 5.5994 3.6965 1.4462 28 1 -0.3634 -1.0236 0.0898 29 1 -0.3633 0.5897 0.8417 30 1 -0.3634 0.4341 -0.9315 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8898 33 1 1.3369 1.8186 -1.9347 34 1 2.0785 3.1852 -1.0682 35 1 5.2135 2.5048 -4.5062 36 1 4.3355 1.2660 2.3975 37 1 5.8375 0.6581 -0.0836 38 1 6.5489 1.0937 1.4883 39 1 6.9323 2.7676 -1.0259 40 1 8.0537 1.4730 -0.5430 41 1 8.7205 3.8064 0.2421 42 1 8.5668 2.6021 1.5474 43 1 8.0556 5.6868 2.2990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336946607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:29 Heat of formation + Delta-G solvation = -8.409746 kcal Electronic energy + Delta-G solvation = -28206.553965 eV Core-core repulsion = 24414.832606 eV Total energy + Delta-G solvation = -3791.721359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07796 -36.89243 -36.47139 -36.06609 -35.08274 -33.74547 -32.66493 -30.72006 -30.19911 -29.68541 -27.33066 -27.04875 -23.67960 -22.87557 -21.53511 -21.40034 -20.60954 -18.84159 -18.50419 -17.32445 -17.16740 -16.80330 -16.56953 -15.78344 -15.10924 -14.87571 -14.22584 -14.08358 -13.79535 -13.64174 -13.35473 -13.21151 -12.91458 -12.67121 -12.46636 -12.38608 -12.00096 -11.94628 -11.72252 -11.45251 -11.31503 -11.25879 -11.09346 -10.97126 -10.82836 -10.47936 -10.45419 -10.41373 -10.32912 -10.10846 -9.82763 -9.56818 -9.14601 -9.01220 -8.64994 -8.10288 -8.07253 -6.19244 -4.18848 1.35794 2.25360 3.08946 3.18980 3.26440 3.33311 3.38260 3.65701 4.24866 4.34384 4.84277 4.99999 5.13140 5.15147 5.34680 5.40867 5.45103 5.55387 5.68635 5.73445 5.78659 5.89232 5.93977 6.03373 6.06511 6.11149 6.20222 6.29380 6.49267 6.51316 6.55126 6.62808 6.66156 6.71293 6.90518 6.98057 7.01488 7.16621 7.34260 7.50586 7.59564 7.65322 8.10972 8.38360 8.83421 9.42184 10.91279 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.006961 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.943369 B = 4021.163689 C = 5358.274832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.989 5.989 4 C 0.210 3.790 5 C -0.549 4.549 6 H 0.089 0.911 7 C 0.083 3.917 8 N -0.884 5.884 9 Si 0.863 3.137 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.784 3.216 14 O -1.002 7.002 15 O -0.965 6.965 16 N -1.115 6.115 17 C 0.225 3.775 18 H 0.147 0.853 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.040 4.040 22 C -0.228 4.228 23 C 0.045 3.955 24 N -0.494 5.494 25 H 0.434 0.566 26 N -0.256 5.256 27 C 0.073 3.927 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.405 0.595 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -0.001 8.738 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.830 5.830 4 C 0.086 3.914 5 C -0.587 4.587 6 H 0.107 0.893 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.690 3.310 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.791 3.209 14 O -0.986 6.986 15 O -0.948 6.948 16 N -0.871 5.871 17 C 0.116 3.884 18 H 0.164 0.836 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.078 4.078 22 C -0.240 4.240 23 C -0.100 4.100 24 N -0.203 5.203 25 H 0.277 0.723 26 N -0.077 5.077 27 C -0.099 4.099 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.052 1.071 9.390 9.931 hybrid contribution 0.659 0.522 -0.505 0.980 sum 3.710 1.594 8.885 9.760 Atomic orbital electron populations 1.22206 0.97062 1.01445 1.02151 1.20998 0.93477 0.82679 1.02560 1.57594 1.78757 1.22945 1.23655 1.19619 0.98335 0.92129 0.81309 1.21526 1.01535 1.29285 1.06381 0.89283 1.24799 0.94882 0.95819 0.96682 1.69862 1.20742 1.43238 1.18273 0.87035 0.82523 0.82417 0.79009 1.19807 1.21110 1.18824 1.01867 0.72669 0.73770 0.72562 1.93537 1.72298 1.75540 1.57252 1.93613 1.85292 1.30370 1.85564 1.55974 1.25422 1.63312 1.42393 1.19722 0.89743 0.86033 0.92951 0.83627 1.21705 0.94414 0.98135 1.00392 1.21503 0.96916 0.98262 0.98582 1.20029 0.94645 0.96014 0.97145 1.20167 0.95172 0.99219 1.09467 1.21947 0.90420 0.97294 1.00359 1.46492 1.04551 1.22354 1.46875 0.72316 1.77325 1.13268 0.99991 1.17121 1.23021 0.92351 0.96764 0.97758 0.92211 0.92743 0.92351 0.89926 0.91525 0.94571 0.93966 0.92482 0.76307 0.89795 0.92437 0.89905 0.91538 0.91599 0.91899 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.23 37.15 0.38 -2.22 16 2 C 0.13 2.19 6.08 -4.04 -0.02 2.17 16 3 N -0.99 -19.73 2.83 -115.67 -0.33 -20.06 16 4 C 0.21 4.75 4.35 -5.19 -0.02 4.73 16 5 C -0.55 -13.45 7.54 -34.44 -0.26 -13.71 16 6 H 0.09 2.23 6.62 -52.49 -0.35 1.89 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.88 -23.73 13.96 55.43 0.77 -22.96 16 9 Si 0.86 20.24 27.47 -169.99 -4.67 15.57 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 13 S 2.78 56.64 6.03 -107.50 -0.65 55.99 16 14 O -1.00 -21.03 17.04 -57.17 -0.97 -22.01 16 15 O -0.97 -22.75 16.21 -57.17 -0.93 -23.68 16 16 N -1.12 -19.84 5.52 -5.61 -0.03 -19.87 16 17 C 0.22 4.22 2.64 -68.77 -0.18 4.04 16 18 H 0.15 3.24 4.87 -51.93 -0.25 2.99 16 19 C -0.11 -1.72 5.33 -26.52 -0.14 -1.86 16 20 C -0.11 -1.77 5.87 -26.52 -0.16 -1.93 16 21 C -0.04 -0.53 6.28 -27.60 -0.17 -0.71 16 22 C -0.23 -3.57 5.89 -104.98 -0.62 -4.19 16 23 C 0.04 0.59 11.95 -17.36 -0.21 0.38 16 24 N -0.49 -7.21 7.37 30.35 0.22 -6.99 16 25 H 0.43 4.71 8.96 -182.44 -1.64 3.07 16 26 N -0.26 -5.00 12.47 33.75 0.42 -4.58 16 27 C 0.07 1.37 6.70 -82.34 -0.55 0.82 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.07 1.03 7.54 -51.93 -0.39 0.64 16 33 H 0.04 0.81 7.17 -51.93 -0.37 0.44 16 34 H 0.04 1.02 6.36 -51.93 -0.33 0.69 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.41 6.07 8.87 -34.47 -0.31 5.76 16 37 H 0.08 1.42 7.40 -51.93 -0.38 1.04 16 38 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -32.43 355.30 -10.27 -42.70 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.41 Total: 10.96 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.05 Total: -10.44 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: 1.06 Total: -74.45 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.90 Total: -45.68 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 16 Polarization: 56.64 SS G_CDS: -0.65 Total: 55.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.43 -10.27 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336946607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.286 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds