Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34637 * 116.99809 * 2 1 4 4 O 1.21503 * 120.00318 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99445 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63388 * 359.97207 * 5 3 2 7 7 C 1.53193 * 108.77283 * 126.41641 * 6 5 3 8 8 C 1.53040 * 109.34088 * 54.62038 * 7 6 5 9 9 C 1.53043 * 109.53796 * 298.68390 * 8 7 6 10 10 H 1.08997 * 109.49660 * 301.34452 * 9 8 7 11 11 N 1.46499 * 109.49774 * 181.28432 * 9 8 7 12 12 C 1.34773 * 120.00486 * 155.06175 * 11 9 8 13 13 O 1.21584 * 119.99491 * 0.02562 * 12 11 9 14 14 N 1.34767 * 120.00288 * 179.97438 * 12 11 9 15 15 C 1.46500 * 120.00203 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47583 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99790 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00201 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99695 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00563 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99824 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00235 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99469 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99650 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.46922 * 120.62616 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.47522 * 300.00053 * 1 2 3 29 29 H 1.09004 * 109.47224 * 60.00314 * 1 2 3 30 30 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.58705 * 246.20757 * 6 5 3 32 32 H 1.08998 * 109.58272 * 6.62701 * 6 5 3 33 33 H 1.08995 * 109.49294 * 174.58861 * 7 6 5 34 34 H 1.09001 * 109.49821 * 294.65213 * 7 6 5 35 35 H 1.08992 * 109.48417 * 178.64475 * 8 7 6 36 36 H 1.08999 * 109.43205 * 58.68476 * 8 7 6 37 37 H 0.97003 * 119.99616 * 335.06170 * 11 9 8 38 38 H 0.97004 * 120.00402 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47129 * 59.99746 * 15 14 12 40 40 H 1.09001 * 109.47049 * 299.99818 * 15 14 12 41 41 H 0.96991 * 119.99747 * 359.97438 * 18 16 15 42 42 H 0.97001 * 119.99677 * 0.02562 * 22 21 19 43 43 H 1.08997 * 109.59073 * 113.79831 * 27 5 3 44 44 H 1.09001 * 109.58820 * 353.36814 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2124 0.1128 -1.1681 8 6 6.0235 1.4071 -1.0725 9 6 5.0816 2.6095 -1.1681 10 1 4.5353 2.5697 -2.1104 11 7 5.8619 3.8479 -1.1073 12 6 5.3749 4.9789 -1.6551 13 8 4.2877 4.9715 -2.1993 14 7 6.0926 6.1183 -1.5987 15 6 5.5629 7.3478 -2.1936 16 6 6.5518 8.4678 -1.9965 17 8 7.5960 8.2596 -1.4156 18 7 6.2753 9.7011 -2.4646 19 6 7.1752 10.7198 -2.2856 20 1 8.1054 10.5342 -1.7691 21 6 6.8900 11.9913 -2.7678 22 7 5.7580 12.2173 -3.3958 23 14 8.1157 13.3796 -2.5233 24 1 9.4005 13.0269 -3.1793 25 1 8.3428 13.5894 -1.0708 26 1 7.5786 14.6261 -3.1259 27 6 4.0905 2.5718 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.7705 -0.0278 0.9389 32 1 3.5758 -0.8224 -0.1185 33 1 5.8861 -0.7429 -1.1228 34 1 4.6649 0.0953 -2.1104 35 1 6.7449 1.4451 -1.8886 36 1 6.5517 1.4345 -0.1194 37 1 6.7291 3.8539 -0.6728 38 1 6.9598 6.1243 -1.1642 39 1 4.6194 7.6068 -1.7132 40 1 5.3974 7.1934 -3.2599 41 1 5.4401 9.8676 -2.9288 42 1 5.1214 11.4965 -3.5224 43 1 4.6275 2.7028 0.9395 44 1 3.3562 3.3687 -0.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805050708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -142.109074 kcal Electronic energy + Delta-G solvation = -27774.735393 eV Core-core repulsion = 23534.463525 eV Total energy + Delta-G solvation = -4240.271868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00785 -40.04253 -38.70612 -38.09812 -36.50329 -34.93959 -34.61983 -33.79654 -32.70851 -31.25213 -30.26710 -28.10578 -27.23643 -25.61935 -24.35142 -23.36705 -21.89022 -20.76073 -20.31987 -19.92447 -18.52934 -18.36685 -18.03790 -17.32677 -16.88868 -16.39183 -15.86227 -15.66185 -15.17914 -15.02786 -14.98445 -14.51515 -14.41117 -14.09096 -13.95728 -13.94017 -13.71011 -13.52240 -13.19334 -13.05224 -12.42470 -12.40078 -12.15765 -11.89124 -11.55730 -11.46973 -11.31386 -11.05876 -11.01066 -10.97988 -10.72476 -10.24810 -10.12379 -9.94761 -9.66699 -9.54661 -9.01770 -8.67824 -8.67077 -8.15434 -6.83945 -3.98503 1.77513 2.54601 2.71780 3.23808 3.31447 3.31558 3.51845 3.56561 3.70594 4.13953 4.28783 4.32025 4.41773 4.51874 4.65896 4.75684 4.83952 4.89363 4.92643 4.99810 5.09548 5.17937 5.19071 5.31681 5.36551 5.47260 5.55658 5.70231 5.74753 5.85188 5.87931 5.90914 5.96491 6.01590 6.42458 6.65215 6.96960 7.01090 7.68236 7.97826 8.00035 8.14710 8.46469 8.64576 8.72075 9.35269 9.69259 10.58868 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.002011 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.359618 B =13923.276316 C =14724.362003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.648 3.352 4 O -0.563 6.563 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.153 3.847 10 H 0.094 0.906 11 N -0.742 5.742 12 C 0.704 3.296 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.128 3.872 16 C 0.431 3.569 17 O -0.592 6.592 18 N -0.561 5.561 19 C -0.387 4.387 20 H 0.101 0.899 21 C -0.007 4.007 22 N -0.893 5.893 23 Si 1.093 2.907 24 H -0.283 1.283 25 H -0.283 1.283 26 H -0.278 1.278 27 C 0.115 3.885 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.380 0.620 42 H 0.264 0.736 43 H 0.074 0.926 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -28.008 6.385 28.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.402 3.598 4 O -0.451 6.451 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.170 4.170 8 C -0.168 4.168 9 C 0.047 3.953 10 H 0.112 0.888 11 N -0.399 5.399 12 C 0.404 3.596 13 O -0.469 6.469 14 N -0.380 5.380 15 C 0.000 4.000 16 C 0.217 3.783 17 O -0.478 6.478 18 N -0.198 5.198 19 C -0.516 4.516 20 H 0.119 0.881 21 C -0.210 4.210 22 N -0.531 5.531 23 Si 0.919 3.081 24 H -0.209 1.209 25 H -0.209 1.209 26 H -0.203 1.203 27 C -0.008 4.008 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.213 0.787 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.089 -26.165 5.952 27.143 hybrid contribution -0.121 -1.525 0.437 1.591 sum -4.210 -27.689 6.390 28.727 Atomic orbital electron populations 1.23205 0.74375 1.03386 1.02928 1.86202 1.24186 1.31051 1.87218 1.18025 0.83133 0.82186 0.76473 1.91046 1.64026 1.34850 1.55159 1.46789 1.01941 1.08253 1.76285 1.21799 0.93931 0.86674 0.98921 1.21896 0.98140 0.97765 0.99199 1.21847 0.98093 0.93394 1.03417 1.21041 0.92014 0.82626 0.99665 0.88784 1.44985 1.23151 1.08404 1.63311 1.15877 0.83989 0.80267 0.79516 1.90946 1.21063 1.84906 1.49989 1.44742 1.23522 1.07609 1.62159 1.20778 0.96718 0.83378 0.99136 1.19678 0.88805 0.83973 0.85815 1.90492 1.27342 1.82645 1.47327 1.41853 1.19611 1.08105 1.50191 1.20559 1.02176 0.89761 1.39068 0.88081 1.26603 1.00545 0.99357 0.94513 1.70895 1.08084 1.35411 1.38706 0.83111 0.73786 0.74497 0.76747 1.20918 1.20904 1.20306 1.22149 0.96149 0.83943 0.98580 0.91841 0.91735 0.87970 0.90889 0.88754 0.89687 0.90914 0.90385 0.90832 0.76695 0.75546 0.89986 0.90052 0.78682 0.92485 0.90783 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.68 9.20 -40.32 -0.37 -4.05 16 3 C 0.65 8.13 8.43 54.06 0.46 8.58 16 4 O -0.56 -9.28 15.54 -19.27 -0.30 -9.58 16 5 N -0.59 -5.97 2.97 -178.54 -0.53 -6.50 16 6 C 0.11 0.67 6.45 -3.71 -0.02 0.65 16 7 C -0.13 -0.69 6.08 -26.61 -0.16 -0.85 16 8 C -0.13 -0.80 5.36 -26.69 -0.14 -0.94 16 9 C 0.15 1.55 2.60 -67.79 -0.18 1.37 16 10 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 11 N -0.74 -8.27 5.08 -58.54 -0.30 -8.57 16 12 C 0.70 11.21 8.53 -86.93 -0.74 10.47 16 13 O -0.59 -11.65 16.01 5.29 0.08 -11.57 16 14 N -0.72 -11.98 5.53 -66.42 -0.37 -12.34 16 15 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 16 C 0.43 9.94 7.85 -10.99 -0.09 9.86 16 17 O -0.59 -15.20 15.24 5.54 0.08 -15.11 16 18 N -0.56 -13.93 5.28 -10.96 -0.06 -13.98 16 19 C -0.39 -10.64 9.68 -14.93 -0.14 -10.79 16 20 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 21 C -0.01 -0.18 5.50 -17.47 -0.10 -0.27 16 22 N -0.89 -24.78 13.68 55.50 0.76 -24.02 16 23 Si 1.09 23.78 29.92 -169.99 -5.09 18.69 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 27 C 0.11 1.26 6.01 -3.69 -0.02 1.24 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.53 6.93 -51.93 -0.36 0.17 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 3.35 8.62 -40.82 -0.35 3.00 16 38 H 0.41 6.47 7.45 -40.82 -0.30 6.17 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.38 8.77 6.73 -40.82 -0.27 8.50 16 42 H 0.26 7.06 6.77 -40.82 -0.28 6.78 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.57 7.00 -51.93 -0.36 1.21 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -36.77 370.79 -6.74 -43.51 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.15 Total: 14.78 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: -0.10 Total: 23.15 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.49 Total: -65.41 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.50 Total: -40.31 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.09 Total: 18.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.77 -6.74 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805050708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.595 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds