Wall clock time and date at job start Tue Mar 31 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34637 * 116.99809 * 2 1 4 4 O 1.21503 * 120.00318 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99445 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63388 * 359.97207 * 5 3 2 7 7 C 1.53193 * 108.77283 * 126.41641 * 6 5 3 8 8 C 1.53040 * 109.34088 * 54.62038 * 7 6 5 9 9 C 1.53043 * 109.53796 * 298.68390 * 8 7 6 10 10 H 1.08997 * 109.49660 * 301.34452 * 9 8 7 11 11 N 1.46499 * 109.49774 * 181.28432 * 9 8 7 12 12 C 1.34773 * 120.00486 * 155.06175 * 11 9 8 13 13 O 1.21584 * 119.99491 * 0.02562 * 12 11 9 14 14 N 1.34767 * 120.00288 * 179.97438 * 12 11 9 15 15 C 1.46500 * 120.00203 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47583 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99790 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00201 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99695 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00563 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99824 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99961 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00235 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99469 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99650 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.46922 * 120.62616 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.47522 * 300.00053 * 1 2 3 29 29 H 1.09004 * 109.47224 * 60.00314 * 1 2 3 30 30 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.58705 * 246.20757 * 6 5 3 32 32 H 1.08998 * 109.58272 * 6.62701 * 6 5 3 33 33 H 1.08995 * 109.49294 * 174.58861 * 7 6 5 34 34 H 1.09001 * 109.49821 * 294.65213 * 7 6 5 35 35 H 1.08992 * 109.48417 * 178.64475 * 8 7 6 36 36 H 1.08999 * 109.43205 * 58.68476 * 8 7 6 37 37 H 0.97003 * 119.99616 * 335.06170 * 11 9 8 38 38 H 0.97004 * 120.00402 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47129 * 59.99746 * 15 14 12 40 40 H 1.09001 * 109.47049 * 299.99818 * 15 14 12 41 41 H 0.96991 * 119.99747 * 359.97438 * 18 16 15 42 42 H 0.97001 * 119.99677 * 0.02562 * 22 21 19 43 43 H 1.08997 * 109.59073 * 113.79831 * 27 5 3 44 44 H 1.09001 * 109.58820 * 353.36814 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2124 0.1128 -1.1681 8 6 6.0235 1.4071 -1.0725 9 6 5.0816 2.6095 -1.1681 10 1 4.5353 2.5697 -2.1104 11 7 5.8619 3.8479 -1.1073 12 6 5.3749 4.9789 -1.6551 13 8 4.2877 4.9715 -2.1993 14 7 6.0926 6.1183 -1.5987 15 6 5.5629 7.3478 -2.1936 16 6 6.5518 8.4678 -1.9965 17 8 7.5960 8.2596 -1.4156 18 7 6.2753 9.7011 -2.4646 19 6 7.1752 10.7198 -2.2856 20 1 8.1054 10.5342 -1.7691 21 6 6.8900 11.9913 -2.7678 22 7 5.7580 12.2173 -3.3958 23 14 8.1157 13.3796 -2.5233 24 1 9.4005 13.0269 -3.1793 25 1 8.3428 13.5894 -1.0708 26 1 7.5786 14.6261 -3.1259 27 6 4.0905 2.5718 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.7705 -0.0278 0.9389 32 1 3.5758 -0.8224 -0.1185 33 1 5.8861 -0.7429 -1.1228 34 1 4.6649 0.0953 -2.1104 35 1 6.7449 1.4451 -1.8886 36 1 6.5517 1.4345 -0.1194 37 1 6.7291 3.8539 -0.6728 38 1 6.9598 6.1243 -1.1642 39 1 4.6194 7.6068 -1.7132 40 1 5.3974 7.1934 -3.2599 41 1 5.4401 9.8676 -2.9288 42 1 5.1214 11.4965 -3.5224 43 1 4.6275 2.7028 0.9395 44 1 3.3562 3.3687 -0.1177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805050708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:01 Heat of formation + Delta-G solvation = -172.252727 kcal Electronic energy + Delta-G solvation = -27776.042520 eV Core-core repulsion = 23534.463525 eV Total energy + Delta-G solvation = -4241.578995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90636 -41.29607 -40.29661 -39.19925 -37.42812 -36.63737 -35.83334 -35.38768 -33.44341 -33.22840 -31.21641 -29.03753 -28.51199 -26.31301 -26.23607 -24.21949 -22.67798 -22.04030 -21.71317 -21.10525 -20.09506 -19.77125 -19.18015 -18.21486 -17.93910 -17.59282 -17.42272 -16.98090 -16.71760 -16.13085 -15.84675 -15.68131 -15.59716 -15.41619 -15.30307 -15.12953 -14.75934 -14.37113 -14.14791 -13.95415 -13.82991 -13.70387 -13.39468 -13.04551 -12.80159 -12.67893 -12.18538 -12.05972 -11.95554 -11.91205 -11.86296 -11.72583 -11.62953 -11.58060 -11.44756 -10.63861 -10.62497 -10.22084 -10.14389 -9.70467 -8.96844 -6.12732 0.95867 1.47198 1.51228 1.57083 1.62067 1.84138 1.87526 2.03845 2.40956 2.83114 2.91929 3.12919 3.24471 3.63657 3.74824 3.95101 3.96178 4.01862 4.15287 4.31269 4.31836 4.32083 4.34413 4.44710 4.52817 4.65747 4.68259 4.73834 4.88794 5.00788 5.10844 5.18707 5.21660 5.22265 5.35007 5.49773 5.57655 5.86753 5.91806 6.15518 6.45682 6.61527 6.97296 7.09956 7.33070 7.46229 7.73546 8.49684 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.002011 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.359618 B =13923.276316 C =14724.362003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.365 6.365 3 C 0.639 3.361 4 O -0.615 6.615 5 N -0.587 5.587 6 C 0.104 3.896 7 C -0.125 4.125 8 C -0.120 4.120 9 C 0.156 3.844 10 H 0.062 0.938 11 N -0.721 5.721 12 C 0.703 3.297 13 O -0.631 6.631 14 N -0.721 5.721 15 C 0.141 3.859 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.574 5.574 19 C -0.411 4.411 20 H 0.083 0.917 21 C -0.041 4.041 22 N -0.912 5.912 23 Si 1.137 2.863 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.275 1.275 27 C 0.118 3.882 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.387 0.613 42 H 0.260 0.740 43 H 0.097 0.903 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -30.313 7.195 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.278 6.278 3 C 0.394 3.606 4 O -0.506 6.506 5 N -0.328 5.328 6 C -0.017 4.017 7 C -0.164 4.164 8 C -0.158 4.158 9 C 0.049 3.951 10 H 0.080 0.920 11 N -0.377 5.377 12 C 0.403 3.597 13 O -0.513 6.513 14 N -0.379 5.379 15 C 0.012 3.988 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.540 4.540 20 H 0.101 0.899 21 C -0.240 4.240 22 N -0.551 5.551 23 Si 0.956 3.044 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.200 1.200 27 C -0.005 4.005 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.254 0.746 38 H 0.250 0.750 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.221 0.779 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.461 -28.567 6.785 29.465 hybrid contribution -0.662 -0.966 0.215 1.190 sum -3.122 -29.533 6.999 30.512 Atomic orbital electron populations 1.23506 0.72999 1.05786 1.02242 1.86217 1.25514 1.29329 1.86771 1.18359 0.83883 0.82231 0.76114 1.91009 1.65386 1.36645 1.57601 1.46951 1.01476 1.09258 1.75078 1.22148 0.93949 0.84930 1.00654 1.21909 0.98134 0.98347 0.97994 1.21854 0.97315 0.91422 1.05202 1.21127 0.92664 0.83591 0.97700 0.92011 1.44840 1.23677 1.07294 1.61927 1.16018 0.83337 0.80937 0.79412 1.90928 1.22896 1.85576 1.51862 1.44630 1.23753 1.07216 1.62317 1.20568 0.95457 0.82664 1.00063 1.20350 0.88838 0.84255 0.83893 1.90470 1.28690 1.83219 1.47939 1.41899 1.19762 1.08399 1.51061 1.20594 1.02348 0.91053 1.40043 0.89932 1.27961 1.01347 1.01313 0.93417 1.70969 1.08751 1.35522 1.39842 0.82601 0.72370 0.71958 0.77509 1.19483 1.19557 1.20015 1.22012 0.95196 0.83384 0.99950 0.92321 0.92761 0.83909 0.88363 0.87988 0.86272 0.92332 0.89546 0.88230 0.74589 0.74954 0.89300 0.89047 0.77916 0.92899 0.88537 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.56 113.37 1.20 1.87 16 2 O -0.37 -6.97 9.20 -55.46 -0.51 -7.48 16 3 C 0.64 16.36 8.43 129.79 1.09 17.46 16 4 O -0.61 -21.54 15.54 19.83 0.31 -21.23 16 5 N -0.59 -11.42 2.97 -949.18 -2.82 -14.24 16 6 C 0.10 0.98 6.45 86.36 0.56 1.53 16 7 C -0.13 -0.89 6.08 30.67 0.19 -0.70 16 8 C -0.12 -1.09 5.36 30.62 0.16 -0.92 16 9 C 0.16 2.99 2.60 45.08 0.12 3.11 16 10 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 11 N -0.72 -15.20 5.08 -457.39 -2.33 -17.52 16 12 C 0.70 22.27 8.53 179.06 1.53 23.79 16 13 O -0.63 -25.52 16.01 -3.98 -0.06 -25.58 16 14 N -0.72 -23.50 5.53 -482.32 -2.67 -26.17 16 15 C 0.14 5.25 6.15 85.63 0.53 5.78 16 16 C 0.44 20.31 7.85 87.66 0.69 21.00 16 17 O -0.62 -31.63 15.24 -3.07 -0.05 -31.68 16 18 N -0.57 -28.82 5.28 -306.98 -1.62 -30.44 16 19 C -0.41 -22.91 9.68 84.04 0.81 -22.09 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.04 -2.22 5.50 84.93 0.47 -1.75 16 22 N -0.91 -50.81 13.68 21.66 0.30 -50.52 16 23 Si 1.14 47.37 29.92 68.60 2.05 49.42 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.12 2.57 6.01 86.38 0.52 3.09 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.85 6.93 -2.39 -0.02 0.84 16 33 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.42 5.97 8.62 -92.71 -0.80 5.17 16 38 H 0.41 12.70 7.45 -92.71 -0.69 12.01 16 39 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.39 18.17 6.73 -92.71 -0.62 17.55 16 42 H 0.26 14.11 6.77 -92.71 -0.63 13.48 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.83 7.00 -2.39 -0.02 1.81 16 Total: -1.00 -83.05 370.79 -0.45 -83.50 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -0.91 Total: 39.79 kcal Atomic # 6 Polarization: 44.30 SS G_CDS: 7.86 Total: 52.16 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -9.14 Total: -138.89 kcal Atomic # 8 Polarization: -85.66 SS G_CDS: -0.31 Total: -85.98 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.05 Total: 49.42 kcal Total: -83.05 -0.45 -83.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805050708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.756 kcal (2) G-P(sol) polarization free energy of solvation -83.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds