Wall clock time and date at job start Tue Mar 31 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00205 * 2 1 4 4 O 1.20835 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00303 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99948 * 270.00135 * 6 5 3 8 8 H 1.08004 * 120.00299 * 148.05593 * 7 6 5 9 9 C 1.38813 * 119.99949 * 328.04955 * 7 6 5 10 10 N 1.31618 * 120.00022 * 156.28368 * 9 7 6 11 11 Si 1.86801 * 120.00149 * 336.28743 * 9 7 6 12 12 H 1.48503 * 109.46948 * 93.08485 * 11 9 7 13 13 H 1.48491 * 109.47162 * 213.08816 * 11 9 7 14 14 H 1.48499 * 109.46855 * 333.08910 * 11 9 7 15 15 C 1.46502 * 120.00180 * 89.99476 * 6 5 3 16 16 C 1.50704 * 109.46845 * 93.54819 * 15 6 5 17 17 O 1.21280 * 120.00118 * 5.61237 * 16 15 6 18 18 N 1.34770 * 119.99839 * 185.61618 * 16 15 6 19 19 C 1.46923 * 120.63509 * 359.71750 * 18 16 15 20 20 C 1.52764 * 109.01400 * 233.58897 * 19 18 16 21 21 C 1.53041 * 109.37811 * 305.58674 * 20 19 18 22 22 C 1.50700 * 109.44755 * 181.25079 * 21 20 19 23 23 O 1.20819 * 120.00148 * 239.94001 * 22 21 20 24 24 O 1.34229 * 119.99860 * 59.93755 * 22 21 20 25 25 C 1.53045 * 109.54050 * 61.23642 * 21 20 19 26 26 C 1.46925 * 120.63065 * 180.02562 * 18 16 15 27 27 H 1.09000 * 109.46880 * 60.00335 * 1 2 3 28 28 H 1.09006 * 109.46587 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47047 * 300.00101 * 1 2 3 30 30 H 1.09001 * 109.47128 * 59.99996 * 5 3 2 31 31 H 1.08993 * 109.46698 * 299.99519 * 5 3 2 32 32 H 0.96999 * 119.99837 * 180.02562 * 10 9 7 33 33 H 1.08989 * 109.47584 * 213.54850 * 15 6 5 34 34 H 1.09007 * 109.47009 * 333.55552 * 15 6 5 35 35 H 1.09005 * 109.58622 * 353.42076 * 19 18 16 36 36 H 1.08999 * 109.58745 * 113.84255 * 19 18 16 37 37 H 1.08997 * 109.56392 * 185.54921 * 20 19 18 38 38 H 1.08997 * 109.36052 * 65.49360 * 20 19 18 39 39 H 1.09002 * 109.46120 * 301.21685 * 21 20 19 40 40 H 0.96702 * 116.99813 * 179.97438 * 24 22 21 41 41 H 1.09000 * 109.49838 * 178.68198 * 25 21 20 42 42 H 1.09007 * 109.52144 * 58.60303 * 25 21 20 43 43 H 1.09002 * 109.59011 * 246.15455 * 26 18 16 44 44 H 1.08999 * 109.58902 * 6.43901 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1754 3.3361 -1.1872 8 1 3.9722 4.3944 -1.2583 9 6 4.6329 2.6411 -2.2983 10 7 4.3890 3.0995 -3.5077 11 14 5.5948 1.0551 -2.0771 12 1 4.6631 -0.1002 -2.1289 13 1 6.5994 0.9299 -3.1634 14 1 6.2862 1.0747 -0.7631 15 6 4.1898 3.3826 1.2674 16 6 5.6426 3.2945 1.6580 17 8 6.4451 2.7925 0.8997 18 7 6.0502 3.7735 2.8500 19 6 5.0910 4.3899 3.7767 20 6 5.5972 5.7774 4.1668 21 6 7.0200 5.6622 4.7189 22 6 7.5095 7.0260 5.1328 23 8 8.4957 7.4961 4.6169 24 8 6.8498 7.7186 6.0746 25 6 7.9439 5.0950 3.6386 26 6 7.4632 3.6953 3.2447 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9558 0.7809 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 4.7084 2.6137 -4.2841 33 1 3.9070 4.4290 1.1537 34 1 3.5767 2.9226 2.0425 35 1 4.1196 4.4803 3.2905 36 1 4.9985 3.7730 4.6706 37 1 4.9446 6.2031 4.9289 38 1 5.5993 6.4217 3.2876 39 1 7.0214 4.9981 5.5832 40 1 7.2019 8.5886 6.3071 41 1 8.9614 5.0352 4.0248 42 1 7.9243 5.7456 2.7642 43 1 7.5686 3.0206 4.0942 44 1 8.0563 3.3252 2.4084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831164310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:29 Heat of formation + Delta-G solvation = -168.651030 kcal Electronic energy + Delta-G solvation = -29203.781137 eV Core-core repulsion = 24930.065572 eV Total energy + Delta-G solvation = -4273.715565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83803 -39.75614 -39.43472 -37.25718 -36.37109 -36.04382 -34.96071 -33.04092 -31.77737 -31.31457 -29.13837 -27.57096 -26.41127 -25.95918 -23.54441 -22.79868 -22.01115 -20.71138 -20.23778 -18.73165 -18.30096 -17.41680 -17.13999 -16.93256 -16.40132 -16.21344 -15.83049 -15.68727 -15.38793 -15.10904 -14.79392 -14.27542 -14.09754 -13.90375 -13.62439 -13.33435 -13.00823 -12.91411 -12.74068 -12.53103 -12.35728 -12.16114 -11.95560 -11.81537 -11.63392 -11.50029 -11.35159 -11.04173 -10.90720 -10.84808 -10.63988 -10.39738 -10.23971 -10.11932 -9.77420 -9.72892 -9.03934 -8.52644 -8.40497 -7.18300 -6.02212 -3.43474 1.93758 2.73529 3.01278 3.14077 3.28871 3.30519 3.43400 3.56071 3.77155 4.33190 4.41112 4.53848 4.67228 4.75398 4.89451 5.04926 5.12230 5.14499 5.30742 5.39450 5.43187 5.44039 5.49381 5.51285 5.61586 5.63069 5.67960 5.78286 5.81974 5.85245 5.90236 6.00328 6.06378 6.09599 6.23480 6.24757 6.75481 7.03409 7.61751 7.64726 7.84329 8.23947 8.54271 8.77162 8.88402 9.61422 9.85419 11.11708 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.003484 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.061350 B = 8034.618346 C = 9004.639257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.428 3.572 4 O -0.492 6.492 5 C 0.142 3.858 6 N -0.550 5.550 7 C -0.267 4.267 8 H 0.086 0.914 9 C 0.041 3.959 10 N -0.891 5.891 11 Si 0.856 3.144 12 H -0.286 1.286 13 H -0.300 1.300 14 H -0.231 1.231 15 C 0.136 3.864 16 C 0.481 3.519 17 O -0.504 6.504 18 N -0.630 5.630 19 C 0.113 3.887 20 C -0.128 4.128 21 C -0.076 4.076 22 C 0.482 3.518 23 O -0.513 6.513 24 O -0.517 6.517 25 C -0.119 4.119 26 C 0.113 3.887 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.408 0.592 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 1.200 20.696 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.267 3.733 4 O -0.377 6.377 5 C 0.012 3.988 6 N -0.267 5.267 7 C -0.394 4.394 8 H 0.104 0.896 9 C -0.160 4.160 10 N -0.530 5.530 11 Si 0.685 3.315 12 H -0.216 1.216 13 H -0.228 1.228 14 H -0.154 1.154 15 C 0.006 3.994 16 C 0.268 3.732 17 O -0.376 6.376 18 N -0.369 5.369 19 C -0.011 4.011 20 C -0.167 4.167 21 C -0.096 4.096 22 C 0.324 3.676 23 O -0.401 6.401 24 O -0.329 6.329 25 C -0.158 4.158 26 C -0.010 4.010 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.267 0.733 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.456 0.980 19.767 19.796 hybrid contribution 0.585 -0.020 0.159 0.607 sum 1.042 0.960 19.926 19.976 Atomic orbital electron populations 1.23074 0.78540 1.02433 1.01935 1.86611 1.22064 1.35692 1.84963 1.26376 0.94050 0.80869 0.72023 1.90569 1.66709 1.36310 1.44088 1.21203 0.85398 0.88655 1.03508 1.43518 1.72771 1.08067 1.02381 1.18681 1.40255 0.95558 0.84946 0.89608 1.25305 0.97305 0.98450 0.94965 1.69876 1.44617 1.40972 0.97555 0.87343 0.81206 0.82766 0.80180 1.21580 1.22783 1.15432 1.21033 0.89874 0.99600 0.88927 1.22950 0.93845 0.77044 0.79398 1.90724 1.55358 1.42241 1.49297 1.48575 1.07785 1.61966 1.18530 1.21541 0.93349 0.92272 0.93906 1.21894 0.93653 0.98955 1.02164 1.21077 0.97820 0.90093 1.00579 1.23617 0.80608 0.87796 0.75569 1.90735 1.26207 1.69986 1.53129 1.84540 1.57882 1.35249 1.55216 1.21862 0.98357 0.97460 0.98090 1.21443 0.83484 0.95076 1.01032 0.92395 0.89189 0.92706 0.88532 0.89749 0.92517 0.89447 0.91000 0.88774 0.91375 0.89355 0.90514 0.87204 0.73294 0.90155 0.90329 0.92027 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.96 10.57 -39.26 -0.41 -7.38 16 3 C 0.43 9.12 8.03 36.01 0.29 9.41 16 4 O -0.49 -11.59 16.18 -18.76 -0.30 -11.90 16 5 C 0.14 3.09 5.11 -5.19 -0.03 3.06 16 6 N -0.55 -12.89 1.21 -175.98 -0.21 -13.10 16 7 C -0.27 -7.48 9.82 -15.06 -0.15 -7.63 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 C 0.04 1.21 5.32 -17.43 -0.09 1.12 16 10 N -0.89 -27.61 13.97 55.49 0.78 -26.84 16 11 Si 0.86 22.20 24.86 -169.99 -4.23 17.98 16 12 H -0.29 -7.08 6.55 56.52 0.37 -6.71 16 13 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 14 H -0.23 -5.98 5.76 56.52 0.33 -5.66 16 15 C 0.14 2.50 4.52 -5.19 -0.02 2.48 16 16 C 0.48 8.79 7.75 -10.99 -0.09 8.71 16 17 O -0.50 -11.61 14.29 5.56 0.08 -11.54 16 18 N -0.63 -8.43 2.98 -173.06 -0.52 -8.95 16 19 C 0.11 1.05 6.27 -3.93 -0.02 1.03 16 20 C -0.13 -1.08 5.28 -26.83 -0.14 -1.22 16 21 C -0.08 -0.66 2.59 -91.73 -0.24 -0.90 16 22 C 0.48 4.69 7.63 36.01 0.27 4.97 16 23 O -0.51 -6.81 16.74 -18.74 -0.31 -7.12 16 24 O -0.52 -3.64 13.30 -39.26 -0.52 -4.16 16 25 C -0.12 -1.28 4.65 -26.63 -0.12 -1.40 16 26 C 0.11 1.35 6.43 -3.74 -0.02 1.33 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.10 2.32 2.55 -51.93 -0.13 2.19 16 31 H 0.08 1.55 8.07 -51.93 -0.42 1.13 16 32 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.09 1.56 7.85 -51.94 -0.41 1.15 16 34 H 0.07 1.09 7.57 -51.93 -0.39 0.70 16 35 H 0.09 0.85 5.95 -51.93 -0.31 0.55 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.41 1.31 9.10 45.56 0.41 1.73 16 41 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 42 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 1.42 7.00 -51.93 -0.36 1.06 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -38.52 363.20 -4.98 -43.50 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.50 Total: 1.52 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 0.70 Total: 22.51 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.05 Total: -48.89 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.47 Total: -42.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.23 Total: 17.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.52 -4.98 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831164310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.155 kcal (2) G-P(sol) polarization free energy of solvation -38.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds