Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00385 * 2 1 4 4 H 1.09001 * 110.35152 * 30.68181 * 3 2 1 5 5 C 1.53996 * 110.30711 * 268.54724 * 3 2 1 6 6 N 1.47897 * 107.05841 * 242.30518 * 5 3 2 7 7 C 1.46908 * 111.00309 * 214.15322 * 6 5 3 8 8 C 1.50693 * 109.47111 * 176.64677 * 7 6 5 9 9 O 1.21293 * 120.00340 * 6.16177 * 8 7 6 10 10 N 1.34779 * 119.99879 * 186.15471 * 8 7 6 11 11 C 1.37092 * 120.00300 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99736 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00115 * 180.02562 * 11 10 8 14 14 N 1.31402 * 120.00107 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99765 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47117 * 60.00373 * 15 13 11 17 17 H 1.48497 * 109.46767 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47426 * 300.00132 * 15 13 11 19 19 C 1.48528 * 105.82203 * 334.66807 * 6 5 3 20 20 C 1.54597 * 110.31484 * 152.83111 * 3 2 1 21 21 H 1.09001 * 110.72171 * 22.51398 * 20 3 2 22 22 N 1.46498 * 110.72134 * 259.41075 * 20 3 2 23 23 C 1.34774 * 119.99625 * 154.99962 * 22 20 3 24 24 O 1.21280 * 120.00301 * 359.97438 * 23 22 20 25 25 C 1.50709 * 119.99781 * 179.97438 * 23 22 20 26 26 C 1.50693 * 109.47016 * 179.97438 * 25 23 22 27 27 N 1.34777 * 120.00161 * 179.97438 * 26 25 23 28 28 O 1.21284 * 120.00171 * 359.97438 * 26 25 23 29 29 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46875 * 300.00323 * 1 2 3 31 31 H 1.08995 * 109.46711 * 60.00327 * 1 2 3 32 32 H 1.09000 * 109.91948 * 122.95443 * 5 3 2 33 33 H 1.09007 * 109.91802 * 1.66083 * 5 3 2 34 34 H 1.08999 * 109.46793 * 296.65422 * 7 6 5 35 35 H 1.08997 * 109.46721 * 56.64801 * 7 6 5 36 36 H 0.96996 * 119.99713 * 0.02562 * 10 8 7 37 37 H 0.97004 * 120.00119 * 179.97438 * 14 13 11 38 38 H 1.09007 * 110.66914 * 157.63916 * 19 6 5 39 39 H 1.09002 * 110.67133 * 280.77134 * 19 6 5 40 40 H 0.96999 * 119.99827 * 334.99333 * 22 20 3 41 41 H 1.09002 * 109.46611 * 299.99676 * 25 23 22 42 42 H 1.09001 * 109.46885 * 59.99672 * 25 23 22 43 43 H 0.96998 * 120.00018 * 359.97438 * 27 26 25 44 44 H 0.96993 * 120.00383 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3616 2.0092 0.5215 5 6 2.2612 1.7787 -1.4438 6 7 3.7205 1.9683 -1.5908 7 6 4.0177 3.0881 -2.4941 8 6 5.5080 3.3029 -2.5545 9 8 6.2558 2.5259 -1.9993 10 7 6.0101 4.3583 -3.2257 11 6 7.3658 4.5541 -3.2803 12 1 8.0316 3.8623 -2.7858 13 6 7.8834 5.6425 -3.9719 14 7 7.0733 6.4845 -4.5731 15 14 9.7309 5.9088 -4.0468 16 1 10.3743 4.7357 -4.6909 17 1 10.0231 7.1301 -4.8393 18 1 10.2637 6.0719 -2.6704 19 6 4.2338 2.2371 -0.2232 20 6 3.4069 1.2710 0.6620 21 1 3.8247 0.2647 0.6292 22 7 3.3384 1.7570 2.0423 23 6 4.2614 1.3631 2.9420 24 8 5.1484 0.6060 2.6090 25 6 4.1913 1.8635 4.3618 26 6 5.3292 1.2780 5.1575 27 7 5.4692 1.5880 6.4617 28 8 6.1191 0.5278 4.6244 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.7446 2.7222 -1.6203 33 1 1.9119 1.0236 -2.1481 34 1 3.6427 2.8595 -3.4917 35 1 3.5351 3.9922 -2.1229 36 1 5.4121 4.9798 -3.6695 37 1 7.4346 7.2446 -5.0555 38 1 5.2966 2.0037 -0.1583 39 1 4.0483 3.2730 0.0607 40 1 2.6288 2.3623 2.3087 41 1 4.2650 2.9510 4.3678 42 1 3.2435 1.5611 4.8072 43 1 4.8377 2.1882 6.8880 44 1 6.2014 1.2108 6.9740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212069184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -131.204229 kcal Electronic energy + Delta-G solvation = -28381.901678 eV Core-core repulsion = 24142.102679 eV Total energy + Delta-G solvation = -4239.798998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49991 -39.65428 -38.37603 -38.01188 -36.47805 -34.43456 -33.86352 -33.74419 -31.40258 -31.07526 -29.88023 -28.00621 -27.11170 -25.94810 -24.16782 -22.24470 -21.15247 -20.88868 -20.24769 -19.17354 -17.92569 -17.85999 -17.48100 -16.87350 -16.60239 -16.06053 -15.96907 -15.72921 -15.17175 -15.10274 -14.61863 -14.49080 -14.30256 -14.06911 -13.78341 -13.69776 -13.50492 -13.17013 -12.99384 -12.49322 -12.35606 -12.14130 -12.00629 -11.70521 -11.54555 -11.43912 -11.24421 -10.96347 -10.67462 -10.40243 -10.31563 -10.18026 -9.92079 -9.86494 -9.50065 -9.44549 -9.04095 -8.40897 -8.01369 -7.89970 -6.38830 -3.79189 2.45432 2.70680 2.72580 3.23582 3.28486 3.33997 3.40982 3.60825 3.93257 4.04413 4.27102 4.33089 4.53669 4.65615 4.73517 4.80245 4.90050 5.00115 5.06780 5.08317 5.15666 5.26551 5.35136 5.39989 5.49246 5.52678 5.74034 5.84420 5.92203 6.10591 6.28748 6.37109 6.55981 6.57069 6.99679 7.05894 7.14999 7.21273 7.40988 7.58757 8.09036 8.09482 8.29839 8.65116 9.21647 9.57073 10.09516 10.78956 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.003285 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.554943 B = 8522.806480 C =11003.137832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.075 3.925 4 H 0.070 0.930 5 C 0.014 3.986 6 N -0.485 5.485 7 C 0.038 3.962 8 C 0.441 3.559 9 O -0.572 6.572 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.904 5.904 15 Si 0.930 3.070 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.035 3.965 20 C 0.145 3.855 21 H 0.117 0.883 22 N -0.726 5.726 23 C 0.510 3.490 24 O -0.481 6.481 25 C -0.166 4.166 26 C 0.513 3.487 27 N -0.862 5.862 28 O -0.491 6.491 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.391 0.609 37 H 0.271 0.729 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.394 0.606 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.398 0.602 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 -3.478 18.067 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.115 4.115 6 N -0.210 5.210 7 C -0.094 4.094 8 C 0.226 3.774 9 O -0.456 6.456 10 N -0.201 5.201 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.545 5.545 15 Si 0.757 3.243 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.094 4.094 20 C 0.040 3.960 21 H 0.135 0.865 22 N -0.380 5.380 23 C 0.294 3.706 24 O -0.351 6.351 25 C -0.209 4.209 26 C 0.295 3.705 27 N -0.428 5.428 28 O -0.362 6.362 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.224 0.776 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.060 0.940 40 H 0.228 0.772 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.226 0.774 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.195 -5.533 17.297 24.333 hybrid contribution -0.702 2.310 0.465 2.459 sum -16.897 -3.223 17.762 24.726 Atomic orbital electron populations 1.22802 0.81284 1.02842 0.99786 1.88044 1.19365 1.26671 1.94826 1.23220 0.94373 0.85154 0.95678 0.91194 1.23442 0.90641 1.00800 0.96574 1.64496 1.08325 1.39655 1.08540 1.22114 0.96853 0.92071 0.98357 1.19693 0.88840 0.84036 0.84810 1.90536 1.59844 1.46242 1.48967 1.41840 1.08055 1.23437 1.46775 1.19672 0.82317 1.09608 1.31131 0.87916 1.25242 1.00344 0.95764 0.96545 1.69601 1.35420 1.14862 1.34663 0.85926 0.82284 0.77642 0.78443 1.19831 1.21017 1.19910 1.23690 1.02904 0.96220 0.86587 1.21953 0.93507 1.00930 0.79618 0.86480 1.45869 1.31212 1.50784 1.10145 1.19910 0.82356 0.82027 0.86357 1.90928 1.32442 1.32713 1.79028 1.21579 1.00463 1.04068 0.94775 1.19993 0.86382 0.81794 0.82334 1.43854 1.34536 1.52998 1.11431 1.90954 1.42676 1.33667 1.68917 0.89571 0.94282 0.93900 0.93186 0.89072 0.88906 0.93438 0.77552 0.91882 0.86382 0.94037 0.77172 0.85968 0.86168 0.77427 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.87 101.05 1.10 1.33 16 2 O -0.37 -4.49 10.29 -35.23 -0.36 -4.85 16 3 C 0.07 0.86 3.19 -25.37 -0.08 0.78 16 4 H 0.07 0.59 7.46 -51.93 -0.39 0.20 16 5 C 0.01 0.18 6.51 -2.76 -0.02 0.17 16 6 N -0.49 -8.46 5.11 -231.89 -1.18 -9.65 16 7 C 0.04 0.69 5.30 -4.98 -0.03 0.66 16 8 C 0.44 10.67 7.41 -10.99 -0.08 10.58 16 9 O -0.57 -16.04 13.87 5.55 0.08 -15.96 16 10 N -0.56 -14.52 5.29 -10.97 -0.06 -14.57 16 11 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 12 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 15 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.03 0.61 5.28 -1.90 -0.01 0.60 16 20 C 0.15 2.08 3.16 -66.07 -0.21 1.87 16 21 H 0.12 2.09 7.49 -51.93 -0.39 1.70 16 22 N -0.73 -7.95 5.18 -52.00 -0.27 -8.22 16 23 C 0.51 6.78 7.82 -10.98 -0.09 6.70 16 24 O -0.48 -9.48 13.82 -18.96 -0.26 -9.74 16 25 C -0.17 -1.27 6.19 -29.03 -0.18 -1.45 16 26 C 0.51 5.63 8.09 -10.99 -0.09 5.54 16 27 N -0.86 -5.12 8.87 31.22 0.28 -4.84 16 28 O -0.49 -8.69 15.02 -18.96 -0.28 -8.98 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.24 8.10 -51.93 -0.42 -0.18 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.54 7.68 -51.93 -0.40 0.14 16 33 H 0.09 1.17 7.96 -51.93 -0.41 0.75 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.05 0.76 7.98 -51.93 -0.41 0.34 16 36 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.12 2.66 6.43 -51.92 -0.33 2.32 16 39 H 0.04 0.68 8.01 -51.93 -0.42 0.26 16 40 H 0.39 2.64 8.39 -40.82 -0.34 2.30 16 41 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.40 0.81 8.83 -40.82 -0.36 0.45 16 44 H 0.40 2.27 8.93 -40.82 -0.36 1.90 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -40.88 371.73 -6.88 -47.75 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.19 Total: 12.37 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 0.08 Total: 18.67 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.51 Total: -61.38 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.83 Total: -39.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.88 -6.88 -47.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212069184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.453 kcal (2) G-P(sol) polarization free energy of solvation -40.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds