Wall clock time and date at job start Tue Mar 31 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47129 * 2 1 4 4 N 1.46896 * 109.47339 * 120.00037 * 2 1 3 5 5 C 1.46897 * 111.00007 * 275.00386 * 4 2 1 6 6 C 1.50701 * 109.47442 * 179.97438 * 5 4 2 7 7 O 1.21299 * 119.99491 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00659 * 179.97438 * 6 5 4 9 9 C 1.37102 * 120.00463 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99682 * 359.97438 * 9 8 6 11 11 C 1.38943 * 119.99905 * 180.02562 * 9 8 6 12 12 N 1.31405 * 120.00470 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99686 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47472 * 90.00099 * 13 11 9 15 15 H 1.48509 * 109.47117 * 209.99654 * 13 11 9 16 16 H 1.48497 * 109.47282 * 329.99649 * 13 11 9 17 17 C 1.52995 * 109.47569 * 240.00404 * 2 1 3 18 18 H 1.08993 * 109.52034 * 185.10018 * 17 2 1 19 19 C 1.53296 * 109.51471 * 64.99602 * 17 2 1 20 20 N 1.47153 * 108.38680 * 187.72709 * 19 17 2 21 21 C 1.34774 * 120.97839 * 230.50954 * 20 19 17 22 22 O 1.21349 * 120.00321 * 7.93909 * 21 20 19 23 23 C 1.49461 * 119.99657 * 187.93063 * 21 20 19 24 24 N 1.34776 * 119.99817 * 186.39808 * 23 21 20 25 25 O 1.21345 * 119.99662 * 6.68006 * 23 21 20 26 26 C 1.47152 * 118.03620 * 50.78841 * 20 19 17 27 27 C 1.53717 * 108.15795 * 309.15664 * 26 20 19 28 28 O 1.42958 * 109.14841 * 52.54105 * 27 26 20 29 29 H 1.08999 * 109.47228 * 60.00387 * 1 2 3 30 30 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47530 * 299.99881 * 1 2 3 32 32 H 1.00897 * 111.00179 * 151.04704 * 4 2 1 33 33 H 1.08994 * 109.47480 * 299.99918 * 5 4 2 34 34 H 1.08999 * 109.47176 * 60.00063 * 5 4 2 35 35 H 0.96998 * 119.99650 * 359.97438 * 8 6 5 36 36 H 0.97002 * 120.00918 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.68181 * 68.00281 * 19 17 2 38 38 H 1.09008 * 109.68153 * 307.45248 * 19 17 2 39 39 H 0.96996 * 119.99584 * 180.27833 * 24 23 21 40 40 H 0.97000 * 119.99660 * 0.28195 * 24 23 21 41 41 H 1.08994 * 109.68243 * 68.93326 * 26 20 19 42 42 H 1.08996 * 109.67891 * 189.49407 * 26 20 19 43 43 H 1.09002 * 109.65613 * 292.57386 * 27 26 20 44 44 H 1.09006 * 109.48165 * 172.39838 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5873 -0.5218 3.5560 7 8 2.8678 -1.6988 3.4701 8 7 2.7282 0.1204 4.7325 9 6 3.1880 -0.5567 5.8324 10 1 3.4370 -1.6048 5.7561 11 6 3.3327 0.1053 7.0453 12 7 3.0293 1.3805 7.1383 13 14 3.9586 -0.8174 8.5441 14 1 5.4397 -0.7242 8.6001 15 1 3.3782 -0.2179 9.7726 16 1 3.5555 -2.2436 8.4513 17 6 2.0400 -0.7211 -1.2492 18 1 3.1261 -0.8013 -1.2055 19 6 1.6350 0.0698 -2.4983 20 7 1.9710 -0.7328 -3.6851 21 6 2.6776 -0.2033 -4.7033 22 8 3.1696 0.9003 -4.5911 23 6 2.8554 -0.9755 -5.9705 24 7 3.6668 -0.5048 -6.9383 25 8 2.2652 -2.0237 -6.1301 26 6 1.5072 -2.1286 -3.7301 27 6 1.9232 -2.8140 -2.4185 28 8 1.4669 -2.0293 -1.3141 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.9173 -1.1204 1.0287 33 1 2.7587 1.0462 2.1183 34 1 1.0870 0.6162 2.5525 35 1 2.5049 1.0618 4.8008 36 1 3.1307 1.8428 7.9850 37 1 2.1791 1.0138 -2.5275 38 1 0.5626 0.2641 -2.4781 39 1 3.7790 -1.0039 -7.7623 40 1 4.1385 0.3331 -6.8106 41 1 0.4223 -2.1519 -3.8317 42 1 1.9668 -2.6410 -4.5752 43 1 3.0089 -2.9017 -2.3790 44 1 1.4756 -3.8067 -2.3693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:56 Heat of formation + Delta-G solvation = -124.476989 kcal Electronic energy + Delta-G solvation = -28170.649677 eV Core-core repulsion = 23931.142393 eV Total energy + Delta-G solvation = -4239.507283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39900 -39.67968 -38.59397 -38.17687 -36.26798 -35.28885 -34.02771 -33.88422 -32.16383 -31.15813 -29.53690 -28.36837 -26.73175 -25.46732 -24.44984 -23.79158 -22.35227 -20.45494 -20.20528 -19.21911 -18.45567 -17.86171 -17.75790 -16.95943 -16.69635 -16.57446 -16.15633 -15.64415 -15.49019 -15.30410 -14.91673 -14.57844 -14.47011 -14.34116 -14.22779 -13.68810 -13.55206 -13.33561 -13.07820 -12.69253 -12.49391 -12.08074 -11.78573 -11.70793 -11.58969 -11.48056 -11.33382 -11.06850 -10.94560 -10.75078 -10.45933 -10.37089 -10.33815 -10.18947 -9.73830 -9.47850 -8.97933 -8.40322 -8.01145 -7.92276 -6.38765 -3.79414 0.88912 1.88972 2.66863 3.10587 3.19951 3.28338 3.34698 3.53128 3.92770 3.94639 4.03101 4.25444 4.54726 4.64630 4.68425 4.76519 4.94924 5.07935 5.11894 5.19119 5.27790 5.32644 5.36983 5.50043 5.54748 5.66315 5.74150 5.80907 5.86767 6.01966 6.06720 6.07326 6.29442 6.36388 6.50951 6.69255 6.98667 7.21351 7.29247 7.47412 7.58100 7.70231 8.09753 8.64866 9.21168 9.57864 10.09690 10.79063 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.002062 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.161884 B =13574.974649 C =13698.647413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H 0.057 0.943 4 N -0.654 5.654 5 C 0.049 3.951 6 C 0.442 3.558 7 O -0.581 6.581 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.081 3.919 18 H 0.063 0.937 19 C 0.078 3.922 20 N -0.581 5.581 21 C 0.506 3.494 22 O -0.520 6.520 23 C 0.517 3.483 24 N -0.819 5.819 25 O -0.513 6.513 26 C 0.040 3.960 27 C 0.044 3.956 28 O -0.351 6.351 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.349 0.651 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.412 0.588 40 H 0.415 0.585 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.054 0.946 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -0.133 -27.566 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 H 0.074 0.926 4 N -0.288 5.288 5 C -0.083 4.083 6 C 0.227 3.773 7 O -0.465 6.465 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.022 3.978 18 H 0.081 0.919 19 C -0.045 4.045 20 N -0.315 5.315 21 C 0.288 3.712 22 O -0.396 6.396 23 C 0.297 3.703 24 N -0.385 5.385 25 O -0.390 6.390 26 C -0.082 4.082 27 C -0.033 4.033 28 O -0.269 6.269 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.169 0.831 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.245 0.755 40 H 0.246 0.754 41 H 0.100 0.900 42 H 0.158 0.842 43 H 0.072 0.928 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.665 -1.174 -27.006 27.163 hybrid contribution 1.371 1.089 0.146 1.757 sum -1.295 -0.085 -26.860 26.891 Atomic orbital electron populations 1.21780 0.93742 1.03366 1.00715 1.21523 0.97318 0.94892 0.87902 0.92572 1.60061 1.34870 1.31633 1.02190 1.21753 1.01317 0.93844 0.91404 1.19803 0.84839 0.88199 0.84423 1.90531 1.55127 1.16115 1.84734 1.41863 1.57929 1.12412 1.07993 1.19700 1.39812 0.96427 0.86807 0.87943 1.25257 0.97747 0.95803 0.99228 1.69609 1.48773 1.08860 1.27170 0.85858 0.78722 0.79529 0.80173 1.20472 1.20950 1.19408 1.22604 0.97246 0.84219 0.93727 0.91890 1.22610 1.02621 0.95742 0.83504 1.47994 1.52081 1.13894 1.17493 1.20000 0.79904 0.86578 0.84724 1.90781 1.47137 1.20381 1.81349 1.20128 0.79694 0.85185 0.85311 1.43557 1.47264 1.28263 1.19397 1.90602 1.46486 1.22831 1.79086 1.23613 1.02073 0.80499 1.01995 1.23132 0.99507 0.95493 0.85192 1.88156 1.67222 1.24775 1.46719 0.93048 0.90735 0.92456 0.83057 0.93961 0.89498 0.77481 0.91917 0.87794 0.89163 0.75509 0.75414 0.90034 0.84172 0.92809 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.98 37.15 0.33 -1.30 16 2 C 0.09 1.17 2.49 -67.72 -0.17 1.01 16 3 H 0.06 0.63 7.80 -51.93 -0.40 0.23 16 4 N -0.65 -10.83 5.89 -108.00 -0.64 -11.47 16 5 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 6 C 0.44 10.60 7.82 -10.99 -0.09 10.52 16 7 O -0.58 -16.09 15.78 5.54 0.09 -16.00 16 8 N -0.57 -14.51 5.29 -10.96 -0.06 -14.57 16 9 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 13 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C 0.08 0.92 2.41 -26.58 -0.06 0.86 16 18 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 19 C 0.08 0.76 5.84 -3.53 -0.02 0.74 16 20 N -0.58 -5.62 3.01 -172.52 -0.52 -6.14 16 21 C 0.51 4.99 7.75 -11.58 -0.09 4.90 16 22 O -0.52 -6.06 15.97 5.50 0.09 -5.98 16 23 C 0.52 4.18 8.02 -11.58 -0.09 4.09 16 24 N -0.82 -3.68 8.87 30.91 0.27 -3.40 16 25 O -0.51 -5.01 14.04 5.50 0.08 -4.93 16 26 C 0.04 0.35 6.17 -3.31 -0.02 0.32 16 27 C 0.04 0.42 7.00 37.53 0.26 0.68 16 28 O -0.35 -4.33 9.45 -35.23 -0.33 -4.66 16 29 H 0.05 0.48 6.42 -51.93 -0.33 0.15 16 30 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 31 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 32 H 0.35 6.07 7.98 -39.29 -0.31 5.76 16 33 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 35 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.10 1.03 7.06 -51.93 -0.37 0.66 16 38 H 0.09 0.81 6.28 -51.92 -0.33 0.49 16 39 H 0.41 0.97 8.93 -40.82 -0.36 0.61 16 40 H 0.42 1.43 8.32 -40.82 -0.34 1.09 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.14 1.22 4.48 -54.03 -0.24 0.98 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -34.71 363.44 -5.85 -40.56 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.79 Total: 14.32 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -0.22 Total: 14.58 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.22 Total: -59.62 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.08 Total: -31.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.71 -5.85 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.919 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds