Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47129 * 2 1 4 4 N 1.46896 * 109.47339 * 120.00037 * 2 1 3 5 5 C 1.46897 * 111.00007 * 275.00386 * 4 2 1 6 6 C 1.50701 * 109.47442 * 179.97438 * 5 4 2 7 7 O 1.21299 * 119.99491 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00659 * 179.97438 * 6 5 4 9 9 C 1.37102 * 120.00463 * 180.02562 * 8 6 5 10 10 H 1.07998 * 119.99682 * 359.97438 * 9 8 6 11 11 C 1.38943 * 119.99905 * 180.02562 * 9 8 6 12 12 N 1.31405 * 120.00470 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99686 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47472 * 90.00099 * 13 11 9 15 15 H 1.48509 * 109.47117 * 209.99654 * 13 11 9 16 16 H 1.48497 * 109.47282 * 329.99649 * 13 11 9 17 17 C 1.52995 * 109.47569 * 240.00404 * 2 1 3 18 18 H 1.08993 * 109.52034 * 185.10018 * 17 2 1 19 19 C 1.53296 * 109.51471 * 64.99602 * 17 2 1 20 20 N 1.47153 * 108.38680 * 187.72709 * 19 17 2 21 21 C 1.34774 * 120.97839 * 230.50954 * 20 19 17 22 22 O 1.21349 * 120.00321 * 7.93909 * 21 20 19 23 23 C 1.49461 * 119.99657 * 187.93063 * 21 20 19 24 24 N 1.34776 * 119.99817 * 186.39808 * 23 21 20 25 25 O 1.21345 * 119.99662 * 6.68006 * 23 21 20 26 26 C 1.47152 * 118.03620 * 50.78841 * 20 19 17 27 27 C 1.53717 * 108.15795 * 309.15664 * 26 20 19 28 28 O 1.42958 * 109.14841 * 52.54105 * 27 26 20 29 29 H 1.08999 * 109.47228 * 60.00387 * 1 2 3 30 30 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47530 * 299.99881 * 1 2 3 32 32 H 1.00897 * 111.00179 * 151.04704 * 4 2 1 33 33 H 1.08994 * 109.47480 * 299.99918 * 5 4 2 34 34 H 1.08999 * 109.47176 * 60.00063 * 5 4 2 35 35 H 0.96998 * 119.99650 * 359.97438 * 8 6 5 36 36 H 0.97002 * 120.00918 * 180.02562 * 12 11 9 37 37 H 1.08998 * 109.68181 * 68.00281 * 19 17 2 38 38 H 1.09008 * 109.68153 * 307.45248 * 19 17 2 39 39 H 0.96996 * 119.99584 * 180.27833 * 24 23 21 40 40 H 0.97000 * 119.99660 * 0.28195 * 24 23 21 41 41 H 1.08994 * 109.68243 * 68.93326 * 26 20 19 42 42 H 1.08996 * 109.67891 * 189.49407 * 26 20 19 43 43 H 1.09002 * 109.65613 * 292.57386 * 27 26 20 44 44 H 1.09006 * 109.48165 * 172.39838 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5873 -0.5218 3.5560 7 8 2.8678 -1.6988 3.4701 8 7 2.7282 0.1204 4.7325 9 6 3.1880 -0.5567 5.8324 10 1 3.4370 -1.6048 5.7561 11 6 3.3327 0.1053 7.0453 12 7 3.0293 1.3805 7.1383 13 14 3.9586 -0.8174 8.5441 14 1 5.4397 -0.7242 8.6001 15 1 3.3782 -0.2179 9.7726 16 1 3.5555 -2.2436 8.4513 17 6 2.0400 -0.7211 -1.2492 18 1 3.1261 -0.8013 -1.2055 19 6 1.6350 0.0698 -2.4983 20 7 1.9710 -0.7328 -3.6851 21 6 2.6776 -0.2033 -4.7033 22 8 3.1696 0.9003 -4.5911 23 6 2.8554 -0.9755 -5.9705 24 7 3.6668 -0.5048 -6.9383 25 8 2.2652 -2.0237 -6.1301 26 6 1.5072 -2.1286 -3.7301 27 6 1.9232 -2.8140 -2.4185 28 8 1.4669 -2.0293 -1.3141 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.9173 -1.1204 1.0287 33 1 2.7587 1.0462 2.1183 34 1 1.0870 0.6162 2.5525 35 1 2.5049 1.0618 4.8008 36 1 3.1307 1.8428 7.9850 37 1 2.1791 1.0138 -2.5275 38 1 0.5626 0.2641 -2.4781 39 1 3.7790 -1.0039 -7.7623 40 1 4.1385 0.3331 -6.8106 41 1 0.4223 -2.1519 -3.8317 42 1 1.9668 -2.6410 -4.5752 43 1 3.0089 -2.9017 -2.3790 44 1 1.4756 -3.8067 -2.3693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485646592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = -156.040971 kcal Electronic energy + Delta-G solvation = -28172.018394 eV Core-core repulsion = 23931.142393 eV Total energy + Delta-G solvation = -4240.876000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12302 -40.54437 -40.03036 -39.29676 -37.41453 -36.12389 -35.88399 -34.60765 -33.41520 -33.06412 -30.48676 -29.19622 -28.20491 -26.63362 -25.65344 -24.88805 -23.22114 -21.29140 -21.12934 -20.93745 -19.90662 -19.10738 -18.46929 -17.97859 -17.52444 -17.50990 -17.22464 -16.82922 -16.45626 -16.38116 -16.26410 -16.01228 -15.70830 -15.35412 -15.20682 -15.06669 -14.78244 -14.40769 -14.29106 -13.75263 -13.57277 -13.43118 -13.28205 -13.16880 -12.88233 -12.53332 -12.42940 -12.41398 -12.29326 -12.11518 -11.86170 -11.68535 -11.50253 -11.20419 -10.96644 -10.44263 -10.33447 -10.00977 -9.77426 -9.28895 -8.46111 -5.94818 0.20480 1.22146 1.38235 1.41855 1.54876 1.98214 2.06066 2.29402 2.46567 2.70990 2.86401 3.21037 3.39878 3.47233 3.73374 3.74612 3.84131 3.95060 4.18888 4.25258 4.33477 4.42394 4.44553 4.46112 4.52852 4.61894 4.73591 4.76533 4.90841 4.99754 5.02381 5.08261 5.41359 5.52067 5.60340 5.81430 5.90289 6.03660 6.09421 6.22066 6.39811 6.55585 6.61060 6.94017 7.13287 7.56977 8.12700 8.71278 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.002062 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.161884 B =13574.974649 C =13698.647413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.094 3.906 3 H 0.076 0.924 4 N -0.671 5.671 5 C 0.065 3.935 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.014 4.014 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.274 1.274 17 C 0.086 3.914 18 H 0.055 0.945 19 C 0.083 3.917 20 N -0.584 5.584 21 C 0.503 3.497 22 O -0.542 6.542 23 C 0.519 3.481 24 N -0.797 5.797 25 O -0.533 6.533 26 C 0.048 3.952 27 C 0.042 3.958 28 O -0.373 6.373 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.341 0.659 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.425 0.575 40 H 0.423 0.577 41 H 0.087 0.913 42 H 0.144 0.856 43 H 0.051 0.949 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 0.657 -28.639 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 H 0.094 0.906 4 N -0.304 5.304 5 C -0.067 4.067 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.214 4.214 12 N -0.561 5.561 13 Si 0.817 3.183 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.199 1.199 17 C 0.027 3.973 18 H 0.073 0.927 19 C -0.039 4.039 20 N -0.317 5.317 21 C 0.286 3.714 22 O -0.419 6.419 23 C 0.297 3.703 24 N -0.363 5.363 25 O -0.412 6.412 26 C -0.073 4.073 27 C -0.035 4.035 28 O -0.292 6.292 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.260 0.740 40 H 0.255 0.745 41 H 0.105 0.895 42 H 0.161 0.839 43 H 0.069 0.931 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.809 -0.347 -28.121 28.264 hybrid contribution 1.426 0.840 0.406 1.704 sum -1.383 0.493 -27.716 27.755 Atomic orbital electron populations 1.21746 0.93074 1.02426 1.01865 1.21640 0.97680 0.95606 0.86647 0.90612 1.60068 1.34546 1.32346 1.03437 1.21606 1.02352 0.93659 0.89123 1.20889 0.83148 0.87976 0.85451 1.90498 1.56583 1.18274 1.85607 1.41929 1.58363 1.12573 1.08219 1.19655 1.42111 0.95920 0.88610 0.90429 1.26043 0.97283 0.96671 1.01369 1.69666 1.48583 1.09660 1.28177 0.84925 0.78484 0.77986 0.76912 1.19580 1.19490 1.19880 1.22513 0.96653 0.84210 0.93951 0.92725 1.22533 1.03215 0.95350 0.82841 1.48088 1.51914 1.14227 1.17451 1.20341 0.79357 0.86448 0.85287 1.90767 1.48004 1.21292 1.81864 1.19861 0.80279 0.84883 0.85243 1.43439 1.45659 1.28280 1.18961 1.90596 1.47669 1.23542 1.79352 1.23584 1.02345 0.79950 1.01452 1.23280 0.99494 0.95928 0.84844 1.88125 1.67636 1.25374 1.48015 0.90335 0.92686 0.92850 0.83966 0.91399 0.87743 0.76935 0.91293 0.87746 0.88055 0.73976 0.74537 0.89476 0.83894 0.93090 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.98 71.98 0.65 -2.28 16 2 C 0.09 2.20 2.49 44.91 0.11 2.31 16 3 H 0.08 1.51 7.80 -2.39 -0.02 1.50 16 4 N -0.67 -21.86 5.89 -495.61 -2.92 -24.78 16 5 C 0.06 2.25 5.96 85.56 0.51 2.76 16 6 C 0.44 21.27 7.82 87.66 0.69 21.96 16 7 O -0.62 -35.49 15.78 -3.09 -0.05 -35.54 16 8 N -0.57 -29.88 5.29 -306.99 -1.62 -31.51 16 9 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 12 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 13 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C 0.09 1.86 2.41 30.69 0.07 1.94 16 18 H 0.05 1.27 8.02 -2.39 -0.02 1.25 16 19 C 0.08 1.49 5.84 86.35 0.50 1.99 16 20 N -0.58 -10.55 3.01 -818.09 -2.47 -13.02 16 21 C 0.50 9.29 7.75 87.27 0.68 9.97 16 22 O -0.54 -11.97 15.97 -3.24 -0.05 -12.03 16 23 C 0.52 7.63 8.02 87.27 0.70 8.33 16 24 N -0.80 -5.69 8.87 -174.49 -1.55 -7.24 16 25 O -0.53 -9.67 14.04 -3.23 -0.05 -9.72 16 26 C 0.05 0.78 6.17 86.50 0.53 1.31 16 27 C 0.04 0.76 7.00 72.22 0.51 1.26 16 28 O -0.37 -9.00 9.45 -148.98 -1.41 -10.41 16 29 H 0.08 1.28 6.42 -2.39 -0.02 1.26 16 30 H 0.05 1.43 7.56 -2.39 -0.02 1.41 16 31 H 0.05 1.20 7.45 -2.39 -0.02 1.19 16 32 H 0.34 11.95 7.98 -89.70 -0.72 11.23 16 33 H 0.07 2.03 8.05 -2.39 -0.02 2.01 16 34 H 0.10 3.29 7.44 -2.39 -0.02 3.27 16 35 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 36 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.10 1.89 7.06 -2.39 -0.02 1.87 16 38 H 0.10 1.59 6.28 -2.38 -0.01 1.57 16 39 H 0.43 1.12 8.93 -92.71 -0.83 0.29 16 40 H 0.42 2.12 8.32 -92.71 -0.77 1.35 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.14 2.34 4.48 -35.63 -0.16 2.18 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -75.19 363.44 -3.66 -78.85 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -2.09 Total: 38.78 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 6.23 Total: 30.86 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -8.27 Total: -126.28 kcal Atomic # 8 Polarization: -66.13 SS G_CDS: -1.55 Total: -67.69 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.19 -3.66 -78.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.188 kcal (2) G-P(sol) polarization free energy of solvation -75.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds