Wall clock time and date at job start Tue Mar 31 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47026 * 2 1 4 4 N 1.46901 * 109.47368 * 240.00117 * 2 1 3 5 5 C 1.46904 * 111.00053 * 84.99240 * 4 2 1 6 6 C 1.50700 * 109.46638 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00520 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99465 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99720 * 180.02562 * 8 6 5 10 10 H 1.07995 * 119.99876 * 359.97438 * 9 8 6 11 11 C 1.38946 * 119.99849 * 180.02562 * 9 8 6 12 12 N 1.31419 * 120.00255 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99952 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47039 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46723 * 120.00113 * 13 11 9 16 16 H 1.48500 * 109.47246 * 239.99589 * 13 11 9 17 17 C 1.52998 * 109.47514 * 119.99864 * 2 1 3 18 18 H 1.08999 * 109.55736 * 175.13122 * 17 2 1 19 19 C 1.53303 * 109.51089 * 295.25681 * 17 2 1 20 20 N 1.47146 * 108.38484 * 172.22712 * 19 17 2 21 21 C 1.34783 * 120.98638 * 129.47229 * 20 19 17 22 22 O 1.21343 * 119.99282 * 352.12227 * 21 20 19 23 23 C 1.49445 * 120.00146 * 172.11738 * 21 20 19 24 24 N 1.34773 * 120.00199 * 173.31715 * 23 21 20 25 25 O 1.21358 * 120.00251 * 353.31618 * 23 21 20 26 26 C 1.47175 * 118.07432 * 309.49847 * 20 19 17 27 27 C 1.53291 * 108.37703 * 50.45119 * 26 20 19 28 28 O 1.42958 * 109.51242 * 54.99882 * 17 2 1 29 29 H 1.08994 * 109.47445 * 60.00414 * 1 2 3 30 30 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47006 * 300.00075 * 1 2 3 32 32 H 1.00899 * 111.00146 * 208.95318 * 4 2 1 33 33 H 1.08993 * 109.47304 * 300.00203 * 5 4 2 34 34 H 1.09000 * 109.46387 * 60.00665 * 5 4 2 35 35 H 0.97000 * 120.00260 * 0.02562 * 8 6 5 36 36 H 0.96996 * 120.00202 * 180.02562 * 12 11 9 37 37 H 1.09007 * 109.67583 * 291.94452 * 19 17 2 38 38 H 1.08994 * 109.68013 * 52.49929 * 19 17 2 39 39 H 0.97005 * 119.99507 * 359.97438 * 24 23 21 40 40 H 0.96993 * 120.00487 * 180.02562 * 24 23 21 41 41 H 1.09002 * 109.63771 * 290.75701 * 26 20 19 42 42 H 1.09000 * 109.72883 * 170.20297 * 26 20 19 43 43 H 1.08997 * 109.51478 * 187.82805 * 27 26 20 44 44 H 1.08996 * 109.51328 * 67.72540 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8670 -1.6990 -3.4704 8 7 2.7281 0.1204 -4.7325 9 6 3.1870 -0.5570 -5.8327 10 1 3.4360 -1.6050 -5.7564 11 6 3.3326 0.1053 -7.0454 12 7 3.0301 1.3808 -7.1381 13 14 3.9585 -0.8175 -8.5442 14 1 4.2251 -2.2319 -8.1789 15 1 2.9346 -0.7687 -9.6187 16 1 5.2127 -0.1854 -9.0266 17 6 2.0401 -0.7212 1.2492 18 1 3.1266 -0.7981 1.2081 19 6 1.6295 0.0665 2.4987 20 7 1.9648 -0.7371 3.6849 21 6 2.6677 -0.2075 4.7057 22 8 3.1560 0.8980 4.5969 23 6 2.8455 -0.9817 5.9716 24 7 3.6578 -0.5133 6.9396 25 8 2.2584 -2.0323 6.1279 26 6 1.5110 -2.1366 3.7243 27 6 1.9263 -2.8164 2.4147 28 8 1.4706 -2.0310 1.3104 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9173 -1.1204 -1.0287 33 1 1.0870 0.6162 -2.5526 34 1 2.7588 1.0462 -2.1182 35 1 2.5048 1.0619 -4.8010 36 1 3.1315 1.8430 -7.9848 37 1 2.1709 1.0120 2.5308 38 1 0.5567 0.2577 2.4760 39 1 4.1274 0.3263 6.8145 40 1 3.7735 -1.0159 7.7610 41 1 0.4262 -2.1671 3.8259 42 1 1.9738 -2.6498 4.5672 43 1 1.4811 -3.8099 2.3630 44 1 3.0123 -2.9017 2.3771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:58 Heat of formation + Delta-G solvation = -124.582578 kcal Electronic energy + Delta-G solvation = -28172.185064 eV Core-core repulsion = 23932.673202 eV Total energy + Delta-G solvation = -4239.511862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40137 -39.68359 -38.59487 -38.18072 -36.27218 -35.28758 -34.02687 -33.88600 -32.17595 -31.15768 -29.55535 -28.37366 -26.73341 -25.47048 -24.44956 -23.78867 -22.34987 -20.45429 -20.20147 -19.22094 -18.45888 -17.86263 -17.75948 -16.96125 -16.70206 -16.57781 -16.15455 -15.64480 -15.49164 -15.30561 -14.92173 -14.57532 -14.47544 -14.34070 -14.22895 -13.68672 -13.55303 -13.34047 -13.07689 -12.69269 -12.49768 -12.08146 -11.78782 -11.71240 -11.59342 -11.47827 -11.33447 -11.08265 -10.95177 -10.75240 -10.45753 -10.33882 -10.32129 -10.19684 -9.74167 -9.49031 -8.98251 -8.40459 -8.01246 -7.92297 -6.38973 -3.79544 0.88856 1.88856 2.66835 3.10349 3.18388 3.28691 3.36261 3.53046 3.92706 3.94520 4.03067 4.25417 4.55567 4.64632 4.68193 4.76561 4.94469 5.07797 5.11797 5.19102 5.27644 5.32593 5.36867 5.49885 5.54699 5.66203 5.74193 5.80839 5.86644 6.01886 6.06564 6.07156 6.29313 6.36386 6.50813 6.69046 6.98530 7.21261 7.29160 7.47393 7.58249 7.70172 8.09872 8.64728 9.21160 9.57795 10.09527 10.78945 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.002062 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.495006 B =13575.360243 C =13700.216216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H 0.057 0.943 4 N -0.654 5.654 5 C 0.049 3.951 6 C 0.442 3.558 7 O -0.581 6.581 8 N -0.566 5.566 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.081 3.919 18 H 0.063 0.937 19 C 0.078 3.922 20 N -0.581 5.581 21 C 0.506 3.494 22 O -0.520 6.520 23 C 0.517 3.483 24 N -0.819 5.819 25 O -0.514 6.514 26 C 0.040 3.960 27 C 0.044 3.956 28 O -0.351 6.351 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.349 0.651 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.392 0.608 36 H 0.270 0.730 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.415 0.585 40 H 0.412 0.588 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.110 0.890 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -0.166 27.582 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 H 0.074 0.926 4 N -0.288 5.288 5 C -0.083 4.083 6 C 0.228 3.772 7 O -0.465 6.465 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.181 4.181 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.022 3.978 18 H 0.081 0.919 19 C -0.045 4.045 20 N -0.315 5.315 21 C 0.288 3.712 22 O -0.396 6.396 23 C 0.297 3.703 24 N -0.385 5.385 25 O -0.390 6.390 26 C -0.081 4.081 27 C -0.033 4.033 28 O -0.269 6.269 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.169 0.831 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.246 0.754 40 H 0.245 0.755 41 H 0.099 0.901 42 H 0.158 0.842 43 H 0.128 0.872 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.647 -1.211 27.027 27.183 hybrid contribution 1.360 1.097 -0.153 1.754 sum -1.287 -0.113 26.874 26.905 Atomic orbital electron populations 1.21782 0.93744 1.03366 1.00720 1.21525 0.97314 0.94891 0.87903 0.92572 1.60062 1.34872 1.31630 1.02187 1.21756 1.01318 0.93847 0.91406 1.19804 0.84813 0.88194 0.84425 1.90529 1.55110 1.16100 1.84734 1.41875 1.57974 1.12410 1.07986 1.19752 1.39706 0.96420 0.86792 0.87885 1.25264 0.97776 0.95795 0.99242 1.69623 1.48910 1.08838 1.27045 0.85800 0.78189 0.79626 0.80728 1.19226 1.20769 1.20817 1.22608 0.97266 0.84199 0.93740 0.91887 1.22611 1.02622 0.95739 0.83501 1.47994 1.52382 1.13658 1.17431 1.19997 0.79848 0.86619 0.84730 1.90779 1.47141 1.20289 1.81432 1.20124 0.79696 0.85229 0.85277 1.43557 1.47247 1.28056 1.19623 1.90610 1.46626 1.22694 1.79082 1.23519 1.02212 0.80431 1.01967 1.23051 0.99519 0.95533 0.85235 1.88159 1.67450 1.24602 1.46641 0.92452 0.90736 0.93042 0.83055 0.89492 0.93959 0.77483 0.91972 0.87792 0.89147 0.75418 0.75509 0.90051 0.84210 0.87165 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.98 37.16 0.33 -1.30 16 2 C 0.09 1.17 2.49 -67.71 -0.17 1.01 16 3 H 0.06 0.63 7.80 -51.93 -0.40 0.23 16 4 N -0.65 -10.82 5.88 -107.99 -0.64 -11.46 16 5 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 6 C 0.44 10.60 7.82 -10.98 -0.09 10.52 16 7 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 8 N -0.57 -14.52 5.29 -10.96 -0.06 -14.57 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 10 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 11 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 12 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 13 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.08 0.92 2.42 -26.58 -0.06 0.85 16 18 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 19 C 0.08 0.76 5.84 -3.53 -0.02 0.74 16 20 N -0.58 -5.62 3.02 -172.77 -0.52 -6.14 16 21 C 0.51 4.99 7.75 -11.58 -0.09 4.90 16 22 O -0.52 -6.06 15.97 5.50 0.09 -5.97 16 23 C 0.52 4.18 8.01 -11.59 -0.09 4.09 16 24 N -0.82 -3.67 8.86 30.90 0.27 -3.40 16 25 O -0.51 -5.01 14.05 5.49 0.08 -4.93 16 26 C 0.04 0.35 6.13 -3.52 -0.02 0.33 16 27 C 0.04 0.42 6.98 37.31 0.26 0.68 16 28 O -0.35 -4.33 9.46 -35.23 -0.33 -4.66 16 29 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 31 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 32 H 0.35 6.07 7.99 -39.29 -0.31 5.75 16 33 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 34 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 35 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.10 1.03 7.07 -51.92 -0.37 0.66 16 38 H 0.09 0.81 6.26 -51.93 -0.33 0.49 16 39 H 0.42 1.42 8.32 -40.82 -0.34 1.08 16 40 H 0.41 0.97 8.93 -40.82 -0.36 0.61 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.14 1.22 4.50 -53.95 -0.24 0.98 16 43 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -34.74 363.40 -5.86 -40.59 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -5.79 Total: 14.27 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -0.22 Total: 14.58 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.22 Total: -59.63 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.08 Total: -31.56 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.74 -5.86 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.989 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds