Wall clock time and date at job start Tue Mar 31 2020 05:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47026 * 2 1 4 4 N 1.46901 * 109.47368 * 240.00117 * 2 1 3 5 5 C 1.46904 * 111.00053 * 84.99240 * 4 2 1 6 6 C 1.50700 * 109.46638 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00520 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99465 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99720 * 180.02562 * 8 6 5 10 10 H 1.07995 * 119.99876 * 359.97438 * 9 8 6 11 11 C 1.38946 * 119.99849 * 180.02562 * 9 8 6 12 12 N 1.31419 * 120.00255 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99952 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47039 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46723 * 120.00113 * 13 11 9 16 16 H 1.48500 * 109.47246 * 239.99589 * 13 11 9 17 17 C 1.52998 * 109.47514 * 119.99864 * 2 1 3 18 18 H 1.08999 * 109.55736 * 175.13122 * 17 2 1 19 19 C 1.53303 * 109.51089 * 295.25681 * 17 2 1 20 20 N 1.47146 * 108.38484 * 172.22712 * 19 17 2 21 21 C 1.34783 * 120.98638 * 129.47229 * 20 19 17 22 22 O 1.21343 * 119.99282 * 352.12227 * 21 20 19 23 23 C 1.49445 * 120.00146 * 172.11738 * 21 20 19 24 24 N 1.34773 * 120.00199 * 173.31715 * 23 21 20 25 25 O 1.21358 * 120.00251 * 353.31618 * 23 21 20 26 26 C 1.47175 * 118.07432 * 309.49847 * 20 19 17 27 27 C 1.53291 * 108.37703 * 50.45119 * 26 20 19 28 28 O 1.42958 * 109.51242 * 54.99882 * 17 2 1 29 29 H 1.08994 * 109.47445 * 60.00414 * 1 2 3 30 30 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47006 * 300.00075 * 1 2 3 32 32 H 1.00899 * 111.00146 * 208.95318 * 4 2 1 33 33 H 1.08993 * 109.47304 * 300.00203 * 5 4 2 34 34 H 1.09000 * 109.46387 * 60.00665 * 5 4 2 35 35 H 0.97000 * 120.00260 * 0.02562 * 8 6 5 36 36 H 0.96996 * 120.00202 * 180.02562 * 12 11 9 37 37 H 1.09007 * 109.67583 * 291.94452 * 19 17 2 38 38 H 1.08994 * 109.68013 * 52.49929 * 19 17 2 39 39 H 0.97005 * 119.99507 * 359.97438 * 24 23 21 40 40 H 0.96993 * 120.00487 * 180.02562 * 24 23 21 41 41 H 1.09002 * 109.63771 * 290.75701 * 26 20 19 42 42 H 1.09000 * 109.72883 * 170.20297 * 26 20 19 43 43 H 1.08997 * 109.51478 * 187.82805 * 27 26 20 44 44 H 1.08996 * 109.51328 * 67.72540 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8670 -1.6990 -3.4704 8 7 2.7281 0.1204 -4.7325 9 6 3.1870 -0.5570 -5.8327 10 1 3.4360 -1.6050 -5.7564 11 6 3.3326 0.1053 -7.0454 12 7 3.0301 1.3808 -7.1381 13 14 3.9585 -0.8175 -8.5442 14 1 4.2251 -2.2319 -8.1789 15 1 2.9346 -0.7687 -9.6187 16 1 5.2127 -0.1854 -9.0266 17 6 2.0401 -0.7212 1.2492 18 1 3.1266 -0.7981 1.2081 19 6 1.6295 0.0665 2.4987 20 7 1.9648 -0.7371 3.6849 21 6 2.6677 -0.2075 4.7057 22 8 3.1560 0.8980 4.5969 23 6 2.8455 -0.9817 5.9716 24 7 3.6578 -0.5133 6.9396 25 8 2.2584 -2.0323 6.1279 26 6 1.5110 -2.1366 3.7243 27 6 1.9263 -2.8164 2.4147 28 8 1.4706 -2.0310 1.3104 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9173 -1.1204 -1.0287 33 1 1.0870 0.6162 -2.5526 34 1 2.7588 1.0462 -2.1182 35 1 2.5048 1.0619 -4.8010 36 1 3.1315 1.8430 -7.9848 37 1 2.1709 1.0120 2.5308 38 1 0.5567 0.2577 2.4760 39 1 4.1274 0.3263 6.8145 40 1 3.7735 -1.0159 7.7610 41 1 0.4262 -2.1671 3.8259 42 1 1.9738 -2.6498 4.5672 43 1 1.4811 -3.8099 2.3630 44 1 3.0123 -2.9017 2.3771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485646593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:57 Heat of formation + Delta-G solvation = -156.180453 kcal Electronic energy + Delta-G solvation = -28173.555250 eV Core-core repulsion = 23932.673202 eV Total energy + Delta-G solvation = -4240.882049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.12561 -40.54714 -40.03328 -39.29787 -37.41811 -36.12249 -35.88552 -34.60675 -33.42019 -33.06952 -30.50457 -29.20340 -28.20566 -26.63652 -25.65577 -24.88343 -23.21781 -21.29094 -21.12863 -20.93449 -19.90805 -19.11070 -18.47152 -17.97979 -17.52674 -17.51425 -17.22626 -16.83007 -16.45489 -16.38303 -16.26674 -16.01128 -15.71001 -15.35169 -15.20981 -15.06893 -14.78497 -14.41079 -14.29040 -13.75117 -13.57874 -13.43533 -13.28421 -13.16936 -12.88748 -12.53474 -12.42985 -12.40443 -12.28833 -12.11009 -11.86179 -11.68590 -11.51055 -11.20334 -10.96530 -10.44603 -10.33580 -10.00900 -9.77697 -9.28876 -8.46389 -5.94982 0.20433 1.22020 1.36757 1.41868 1.56299 1.98218 2.05878 2.29314 2.46324 2.70967 2.86356 3.20802 3.39913 3.47225 3.73302 3.74854 3.84252 3.95738 4.18372 4.25199 4.33412 4.42467 4.44512 4.46087 4.52811 4.61897 4.73541 4.76356 4.90796 4.99776 5.02409 5.08281 5.41559 5.52007 5.60122 5.81383 5.90297 6.03542 6.09410 6.22052 6.39824 6.55523 6.60943 6.94004 7.13304 7.56906 8.12595 8.71258 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.002062 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.495006 B =13575.360243 C =13700.216216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.094 3.906 3 H 0.076 0.924 4 N -0.671 5.671 5 C 0.065 3.935 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.574 5.574 9 C -0.332 4.332 10 H 0.078 0.922 11 C -0.014 4.014 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.274 1.274 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.086 3.914 18 H 0.055 0.945 19 C 0.083 3.917 20 N -0.584 5.584 21 C 0.503 3.497 22 O -0.541 6.541 23 C 0.518 3.482 24 N -0.797 5.797 25 O -0.533 6.533 26 C 0.048 3.952 27 C 0.042 3.958 28 O -0.373 6.373 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.341 0.659 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.423 0.577 40 H 0.425 0.575 41 H 0.087 0.913 42 H 0.144 0.856 43 H 0.124 0.876 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 0.638 28.638 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 H 0.094 0.906 4 N -0.304 5.304 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.462 4.462 10 H 0.096 0.904 11 C -0.214 4.214 12 N -0.561 5.561 13 Si 0.817 3.183 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.195 1.195 17 C 0.027 3.973 18 H 0.073 0.927 19 C -0.039 4.039 20 N -0.317 5.317 21 C 0.286 3.714 22 O -0.419 6.419 23 C 0.297 3.703 24 N -0.363 5.363 25 O -0.412 6.412 26 C -0.073 4.073 27 C -0.036 4.036 28 O -0.291 6.291 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.255 0.745 40 H 0.260 0.740 41 H 0.105 0.895 42 H 0.161 0.839 43 H 0.142 0.858 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.807 -0.369 28.125 28.267 hybrid contribution 1.420 0.845 -0.409 1.702 sum -1.388 0.476 27.716 27.755 Atomic orbital electron populations 1.21748 0.93075 1.02427 1.01870 1.21642 0.97677 0.95606 0.86646 0.90610 1.60070 1.34547 1.32344 1.03433 1.21610 1.02354 0.93660 0.89122 1.20891 0.83119 0.87970 0.85454 1.90496 1.56570 1.18265 1.85608 1.41939 1.58408 1.12570 1.08208 1.19690 1.42020 0.95883 0.88602 0.90439 1.26049 0.97308 0.96663 1.01380 1.69678 1.48719 1.09636 1.28088 0.84865 0.78180 0.78000 0.77245 1.19879 1.19600 1.19521 1.22518 0.96682 0.84184 0.93961 0.92711 1.22533 1.03210 0.95354 0.82837 1.48088 1.52211 1.13993 1.17390 1.20338 0.79301 0.86490 0.85291 1.90765 1.48010 1.21196 1.81944 1.19858 0.80279 0.84921 0.85217 1.43438 1.45636 1.28088 1.19176 1.90605 1.47810 1.23403 1.79355 1.23490 1.02481 0.79887 1.01432 1.23199 0.99507 0.95966 0.84882 1.88128 1.67865 1.25205 1.47940 0.92846 0.92684 0.90330 0.83965 0.87734 0.91395 0.76933 0.91303 0.87738 0.88047 0.74539 0.73977 0.89505 0.83927 0.85789 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.98 71.98 0.65 -2.28 16 2 C 0.09 2.20 2.49 44.91 0.11 2.31 16 3 H 0.08 1.51 7.80 -2.38 -0.02 1.49 16 4 N -0.67 -21.85 5.88 -495.57 -2.91 -24.76 16 5 C 0.06 2.25 5.97 85.56 0.51 2.76 16 6 C 0.44 21.28 7.82 87.66 0.69 21.97 16 7 O -0.62 -35.49 15.78 -3.05 -0.05 -35.54 16 8 N -0.57 -29.90 5.29 -306.99 -1.62 -31.52 16 9 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 10 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 11 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 12 N -0.92 -50.04 13.05 21.66 0.28 -49.75 16 13 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 C 0.09 1.86 2.42 30.70 0.07 1.93 16 18 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 19 C 0.08 1.49 5.84 86.36 0.50 1.99 16 20 N -0.58 -10.56 3.02 -818.88 -2.47 -13.03 16 21 C 0.50 9.29 7.75 87.27 0.68 9.97 16 22 O -0.54 -11.96 15.97 -3.23 -0.05 -12.02 16 23 C 0.52 7.63 8.01 87.27 0.70 8.33 16 24 N -0.80 -5.69 8.86 -174.50 -1.55 -7.24 16 25 O -0.53 -9.68 14.05 -3.27 -0.05 -9.73 16 26 C 0.05 0.78 6.13 86.35 0.53 1.31 16 27 C 0.04 0.76 6.98 72.08 0.50 1.26 16 28 O -0.37 -8.99 9.46 -148.98 -1.41 -10.40 16 29 H 0.05 1.20 7.45 -2.39 -0.02 1.19 16 30 H 0.05 1.43 7.56 -2.38 -0.02 1.41 16 31 H 0.08 1.28 6.41 -2.39 -0.02 1.26 16 32 H 0.34 11.94 7.99 -89.69 -0.72 11.23 16 33 H 0.10 3.29 7.44 -2.39 -0.02 3.27 16 34 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 35 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 36 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.10 1.89 7.07 -2.38 -0.02 1.87 16 38 H 0.10 1.59 6.26 -2.39 -0.01 1.57 16 39 H 0.42 2.11 8.32 -92.70 -0.77 1.34 16 40 H 0.43 1.12 8.93 -92.71 -0.83 0.29 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.14 2.33 4.50 -34.34 -0.15 2.18 16 43 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.28 363.40 -3.67 -78.94 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -2.09 Total: 38.66 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 6.22 Total: 30.89 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -8.28 Total: -126.30 kcal Atomic # 8 Polarization: -66.13 SS G_CDS: -1.55 Total: -67.69 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.28 -3.67 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.236 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds