Wall clock time and date at job start Tue Mar 31 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47051 * 2 1 4 4 N 1.46906 * 109.47072 * 240.00197 * 2 1 3 5 5 C 1.46894 * 111.00126 * 85.00171 * 4 2 1 6 6 C 1.50700 * 109.47063 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00380 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.37101 * 119.99877 * 179.72143 * 8 6 5 10 10 H 1.07997 * 120.00006 * 0.27488 * 9 8 6 11 11 C 1.38948 * 119.99779 * 180.27309 * 9 8 6 12 12 N 1.31408 * 120.00331 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99677 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46933 * 90.00342 * 13 11 9 15 15 H 1.48494 * 109.47305 * 210.00078 * 13 11 9 16 16 H 1.48500 * 109.47229 * 330.00571 * 13 11 9 17 17 C 1.53001 * 109.46902 * 120.00459 * 2 1 3 18 18 H 1.08999 * 109.50984 * 299.89535 * 17 2 1 19 19 C 1.53300 * 109.51101 * 179.74509 * 17 2 1 20 20 N 1.47152 * 108.38515 * 187.76994 * 19 17 2 21 21 C 1.34770 * 120.98336 * 230.55975 * 20 19 17 22 22 O 1.21353 * 120.00251 * 358.32562 * 21 20 19 23 23 C 1.49441 * 120.00140 * 178.33422 * 21 20 19 24 24 N 1.34779 * 120.00174 * 186.44222 * 23 21 20 25 25 O 1.21350 * 120.00319 * 6.44209 * 23 21 20 26 26 C 1.47152 * 118.03436 * 50.53676 * 20 19 17 27 27 C 1.53300 * 108.38489 * 309.46693 * 26 20 19 28 28 O 1.42953 * 109.51661 * 59.99914 * 17 2 1 29 29 H 1.08995 * 109.46878 * 60.00095 * 1 2 3 30 30 H 1.09003 * 109.46737 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47180 * 299.99872 * 1 2 3 32 32 H 1.00910 * 110.99650 * 321.04393 * 4 2 1 33 33 H 1.08999 * 109.47242 * 59.99582 * 5 4 2 34 34 H 1.09003 * 109.47125 * 300.00056 * 5 4 2 35 35 H 0.97005 * 119.99879 * 359.97438 * 8 6 5 36 36 H 0.96998 * 119.99831 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.68389 * 307.49673 * 19 17 2 38 38 H 1.08999 * 109.68082 * 68.04479 * 19 17 2 39 39 H 0.96994 * 120.00386 * 359.97438 * 24 23 21 40 40 H 0.97007 * 119.99914 * 179.97438 * 24 23 21 41 41 H 1.08992 * 109.68296 * 189.74219 * 26 20 19 42 42 H 1.09006 * 109.68055 * 69.18706 * 26 20 19 43 43 H 1.09007 * 109.50510 * 292.37784 * 27 26 20 44 44 H 1.08992 * 109.55264 * 172.25250 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8678 -1.6987 -3.4703 8 7 2.7274 0.1203 -4.7328 9 6 3.1921 -0.5555 -5.8314 10 1 3.4418 -1.6034 -5.7550 11 6 3.3417 0.1079 -7.0431 12 7 3.0383 1.3831 -7.1359 13 14 3.9756 -0.8128 -8.5398 14 1 2.8303 -1.3955 -9.2842 15 1 4.7134 0.1260 -9.4226 16 1 4.8868 -1.9008 -8.1025 17 6 2.0400 -0.7214 1.2492 18 1 1.6785 -0.2070 2.1396 19 6 3.5730 -0.7275 1.2470 20 7 4.0353 -1.5831 2.3513 21 6 4.9537 -1.1416 3.2333 22 8 5.4346 -0.0347 3.1058 23 6 5.3802 -2.0152 4.3683 24 7 6.1986 -1.5290 5.3224 25 8 4.9896 -3.1624 4.4310 26 6 3.4648 -2.9348 2.4645 27 6 1.9371 -2.8211 2.4073 28 8 1.5640 -2.0693 1.2501 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.4495 -1.4980 -1.4101 33 1 2.7589 1.0462 -2.1182 34 1 1.0871 0.6164 -2.5525 35 1 2.5028 1.0615 -4.8014 36 1 3.1425 1.8460 -7.9819 37 1 3.9371 -1.1231 0.2989 38 1 3.9443 0.2874 1.3886 39 1 6.5111 -0.6121 5.2722 40 1 6.4751 -2.0960 6.0594 41 1 3.7644 -3.3815 3.4124 42 1 3.8181 -3.5527 1.6389 43 1 1.5760 -2.3147 3.3025 44 1 1.4990 -3.8176 2.3511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:00 Heat of formation + Delta-G solvation = -123.644112 kcal Electronic energy + Delta-G solvation = -28547.804078 eV Core-core repulsion = 24308.332911 eV Total energy + Delta-G solvation = -4239.471167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23255 -39.52950 -38.47047 -38.14063 -36.27913 -35.18456 -33.89571 -33.86992 -31.79045 -31.13664 -29.72251 -28.44878 -26.30875 -25.41020 -24.16857 -23.78909 -22.31174 -20.54037 -20.22320 -19.25463 -18.25695 -17.86432 -17.59595 -16.76628 -16.54654 -16.41823 -15.90456 -15.53881 -15.39062 -15.24044 -14.83858 -14.47351 -14.43243 -14.20033 -14.06041 -13.68506 -13.50731 -13.30508 -12.92109 -12.82070 -12.37127 -12.11752 -11.69022 -11.61941 -11.51703 -11.39327 -11.31351 -11.02340 -10.96878 -10.77993 -10.37624 -10.37096 -10.27074 -10.18406 -9.47699 -9.43185 -8.80604 -8.40807 -7.98518 -7.91544 -6.38779 -3.79315 1.05298 2.09744 2.85010 3.20071 3.28481 3.28645 3.34769 3.66627 3.95033 4.05686 4.11022 4.33754 4.57873 4.77714 4.88908 4.99852 5.07666 5.22920 5.25625 5.29532 5.30848 5.42528 5.45690 5.51918 5.71762 5.72341 5.78991 5.90535 5.95152 6.05444 6.13612 6.20506 6.29043 6.31347 6.49403 6.93916 7.05451 7.29255 7.41218 7.58205 7.64265 7.74824 8.09875 8.64909 9.21344 9.58043 10.09784 10.79088 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.002515 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.543235 B =11131.725683 C =11782.445496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 H 0.092 0.908 4 N -0.657 5.657 5 C 0.048 3.952 6 C 0.442 3.558 7 O -0.581 6.581 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.097 3.903 18 H 0.059 0.941 19 C 0.081 3.919 20 N -0.576 5.576 21 C 0.502 3.498 22 O -0.524 6.524 23 C 0.519 3.481 24 N -0.819 5.819 25 O -0.513 6.513 26 C 0.019 3.981 27 C 0.051 3.949 28 O -0.365 6.365 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.358 0.642 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.157 0.843 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -1.529 25.204 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.110 0.890 4 N -0.290 5.290 5 C -0.084 4.084 6 C 0.227 3.773 7 O -0.465 6.465 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.194 1.194 17 C 0.038 3.962 18 H 0.077 0.923 19 C -0.041 4.041 20 N -0.309 5.309 21 C 0.284 3.716 22 O -0.401 6.401 23 C 0.299 3.701 24 N -0.384 5.384 25 O -0.390 6.390 26 C -0.102 4.102 27 C -0.026 4.026 28 O -0.283 6.283 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.179 0.821 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.173 0.827 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.245 -2.304 24.890 24.998 hybrid contribution -0.355 0.655 -0.645 0.985 sum -0.600 -1.649 24.245 24.309 Atomic orbital electron populations 1.22425 0.96449 1.03027 1.01876 1.21566 0.93404 0.97163 0.89842 0.89043 1.60152 1.57629 1.09049 1.02142 1.21732 0.99934 0.95748 0.91021 1.19815 0.85061 0.88248 0.84152 1.90532 1.55130 1.16248 1.84597 1.41870 1.57846 1.12501 1.08002 1.19696 1.39696 0.96426 0.86906 0.87960 1.25251 0.97747 0.95760 0.99236 1.69610 1.48882 1.08805 1.27141 0.85867 0.78878 0.78966 0.80634 1.20457 1.20957 1.19415 1.22480 0.92270 0.83848 0.97650 0.92305 1.22570 0.94899 0.96511 0.90102 1.48071 1.39116 1.16504 1.27179 1.19881 0.81228 0.86900 0.83563 1.90775 1.54422 1.20389 1.74493 1.20256 0.79137 0.87186 0.83487 1.43559 1.49507 1.18807 1.26570 1.90414 1.53922 1.18624 1.76051 1.23885 0.94542 0.82845 1.08946 1.22950 0.93737 0.97361 0.88585 1.88019 1.75266 1.23271 1.41759 0.92322 0.91353 0.92497 0.82140 0.89658 0.93807 0.77497 0.91924 0.87285 0.88494 0.75402 0.75621 0.82727 0.89991 0.93346 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.02 37.16 0.34 -1.60 16 2 C 0.09 1.10 2.43 -67.71 -0.16 0.94 16 3 H 0.09 1.00 7.80 -51.93 -0.40 0.60 16 4 N -0.66 -10.36 4.86 -107.99 -0.52 -10.88 16 5 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 6 C 0.44 10.42 7.82 -10.98 -0.09 10.33 16 7 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 8 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 9 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 10 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 13 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.10 1.13 2.59 -26.58 -0.07 1.06 16 18 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 19 C 0.08 1.04 5.86 -3.53 -0.02 1.02 16 20 N -0.58 -6.93 3.02 -172.79 -0.52 -7.45 16 21 C 0.50 5.94 7.77 -11.59 -0.09 5.85 16 22 O -0.52 -7.15 15.97 5.49 0.09 -7.06 16 23 C 0.52 4.93 8.08 -11.59 -0.09 4.84 16 24 N -0.82 -4.60 8.87 30.90 0.27 -4.33 16 25 O -0.51 -5.64 13.88 5.50 0.08 -5.56 16 26 C 0.02 0.20 6.39 -3.53 -0.02 0.18 16 27 C 0.05 0.51 6.99 37.31 0.26 0.77 16 28 O -0.36 -4.53 9.58 -35.23 -0.34 -4.86 16 29 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 30 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.36 6.18 8.17 -39.29 -0.32 5.86 16 33 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 34 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 35 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.11 1.69 7.40 -51.93 -0.38 1.31 16 38 H 0.10 1.25 7.09 -51.93 -0.37 0.88 16 39 H 0.42 1.90 8.32 -40.82 -0.34 1.56 16 40 H 0.41 1.36 8.93 -40.82 -0.36 1.00 16 41 H 0.16 1.62 3.96 -56.38 -0.22 1.39 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 44 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -33.92 365.60 -5.87 -39.79 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -5.94 Total: 16.68 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -0.22 Total: 16.15 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.11 Total: -61.14 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.09 Total: -33.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.92 -5.87 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.857 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds