Wall clock time and date at job start Tue Mar 31 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47051 * 2 1 4 4 N 1.46906 * 109.47072 * 240.00197 * 2 1 3 5 5 C 1.46894 * 111.00126 * 85.00171 * 4 2 1 6 6 C 1.50700 * 109.47063 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00380 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.37101 * 119.99877 * 179.72143 * 8 6 5 10 10 H 1.07997 * 120.00006 * 0.27488 * 9 8 6 11 11 C 1.38948 * 119.99779 * 180.27309 * 9 8 6 12 12 N 1.31408 * 120.00331 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99677 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46933 * 90.00342 * 13 11 9 15 15 H 1.48494 * 109.47305 * 210.00078 * 13 11 9 16 16 H 1.48500 * 109.47229 * 330.00571 * 13 11 9 17 17 C 1.53001 * 109.46902 * 120.00459 * 2 1 3 18 18 H 1.08999 * 109.50984 * 299.89535 * 17 2 1 19 19 C 1.53300 * 109.51101 * 179.74509 * 17 2 1 20 20 N 1.47152 * 108.38515 * 187.76994 * 19 17 2 21 21 C 1.34770 * 120.98336 * 230.55975 * 20 19 17 22 22 O 1.21353 * 120.00251 * 358.32562 * 21 20 19 23 23 C 1.49441 * 120.00140 * 178.33422 * 21 20 19 24 24 N 1.34779 * 120.00174 * 186.44222 * 23 21 20 25 25 O 1.21350 * 120.00319 * 6.44209 * 23 21 20 26 26 C 1.47152 * 118.03436 * 50.53676 * 20 19 17 27 27 C 1.53300 * 108.38489 * 309.46693 * 26 20 19 28 28 O 1.42953 * 109.51661 * 59.99914 * 17 2 1 29 29 H 1.08995 * 109.46878 * 60.00095 * 1 2 3 30 30 H 1.09003 * 109.46737 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47180 * 299.99872 * 1 2 3 32 32 H 1.00910 * 110.99650 * 321.04393 * 4 2 1 33 33 H 1.08999 * 109.47242 * 59.99582 * 5 4 2 34 34 H 1.09003 * 109.47125 * 300.00056 * 5 4 2 35 35 H 0.97005 * 119.99879 * 359.97438 * 8 6 5 36 36 H 0.96998 * 119.99831 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.68389 * 307.49673 * 19 17 2 38 38 H 1.08999 * 109.68082 * 68.04479 * 19 17 2 39 39 H 0.96994 * 120.00386 * 359.97438 * 24 23 21 40 40 H 0.97007 * 119.99914 * 179.97438 * 24 23 21 41 41 H 1.08992 * 109.68296 * 189.74219 * 26 20 19 42 42 H 1.09006 * 109.68055 * 69.18706 * 26 20 19 43 43 H 1.09007 * 109.50510 * 292.37784 * 27 26 20 44 44 H 1.08992 * 109.55264 * 172.25250 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8678 -1.6987 -3.4703 8 7 2.7274 0.1203 -4.7328 9 6 3.1921 -0.5555 -5.8314 10 1 3.4418 -1.6034 -5.7550 11 6 3.3417 0.1079 -7.0431 12 7 3.0383 1.3831 -7.1359 13 14 3.9756 -0.8128 -8.5398 14 1 2.8303 -1.3955 -9.2842 15 1 4.7134 0.1260 -9.4226 16 1 4.8868 -1.9008 -8.1025 17 6 2.0400 -0.7214 1.2492 18 1 1.6785 -0.2070 2.1396 19 6 3.5730 -0.7275 1.2470 20 7 4.0353 -1.5831 2.3513 21 6 4.9537 -1.1416 3.2333 22 8 5.4346 -0.0347 3.1058 23 6 5.3802 -2.0152 4.3683 24 7 6.1986 -1.5290 5.3224 25 8 4.9896 -3.1624 4.4310 26 6 3.4648 -2.9348 2.4645 27 6 1.9371 -2.8211 2.4073 28 8 1.5640 -2.0693 1.2501 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.4495 -1.4980 -1.4101 33 1 2.7589 1.0462 -2.1182 34 1 1.0871 0.6164 -2.5525 35 1 2.5028 1.0615 -4.8014 36 1 3.1425 1.8460 -7.9819 37 1 3.9371 -1.1231 0.2989 38 1 3.9443 0.2874 1.3886 39 1 6.5111 -0.6121 5.2722 40 1 6.4751 -2.0960 6.0594 41 1 3.7644 -3.3815 3.4124 42 1 3.8181 -3.5527 1.6389 43 1 1.5760 -2.3147 3.3025 44 1 1.4990 -3.8176 2.3511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485646594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:00 Heat of formation + Delta-G solvation = -154.259361 kcal Electronic energy + Delta-G solvation = -28549.131655 eV Core-core repulsion = 24308.332911 eV Total energy + Delta-G solvation = -4240.798744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09669 -40.49334 -39.98807 -39.28211 -37.44815 -36.11351 -35.86367 -34.60812 -33.31697 -32.78688 -30.74983 -29.35192 -27.93023 -26.39281 -25.60447 -24.89961 -23.19357 -21.49573 -21.09061 -21.05380 -19.91113 -19.03960 -18.39507 -17.91123 -17.50925 -17.43198 -17.10933 -16.78505 -16.44103 -16.28718 -16.24679 -15.92779 -15.70483 -15.33297 -15.07312 -15.04610 -14.85217 -14.30462 -14.17994 -13.92108 -13.62055 -13.51330 -13.32382 -13.01767 -12.72862 -12.59153 -12.46010 -12.40526 -12.24835 -12.12566 -11.88381 -11.71409 -11.49559 -11.17525 -10.98436 -10.33391 -10.26995 -9.99980 -9.76195 -9.20226 -8.45809 -5.94152 0.22020 1.27529 1.38007 1.41452 1.54291 2.00520 2.08014 2.29595 2.50177 2.80509 2.94130 3.21788 3.38319 3.53273 3.68523 3.89684 4.00875 4.16555 4.21614 4.30177 4.34097 4.45721 4.50365 4.51261 4.56261 4.64220 4.76245 4.86982 4.92918 4.98781 5.05162 5.11699 5.34718 5.41776 5.67911 5.84205 5.90819 6.07561 6.11738 6.28952 6.45026 6.60117 6.62123 6.94909 7.14290 7.58536 8.14430 8.71692 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.002515 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.543235 B =11131.725683 C =11782.445496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.107 0.893 4 N -0.669 5.669 5 C 0.064 3.936 6 C 0.439 3.561 7 O -0.623 6.623 8 N -0.575 5.575 9 C -0.332 4.332 10 H 0.077 0.923 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.274 1.274 17 C 0.103 3.897 18 H 0.080 0.920 19 C 0.084 3.916 20 N -0.580 5.580 21 C 0.498 3.502 22 O -0.546 6.546 23 C 0.522 3.478 24 N -0.794 5.794 25 O -0.530 6.530 26 C 0.022 3.978 27 C 0.050 3.950 28 O -0.383 6.383 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.347 0.653 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.423 0.577 40 H 0.426 0.574 41 H 0.164 0.836 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -0.822 26.607 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 H 0.125 0.875 4 N -0.301 5.301 5 C -0.068 4.068 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.095 0.905 11 C -0.213 4.213 12 N -0.562 5.562 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.199 1.199 17 C 0.044 3.956 18 H 0.098 0.902 19 C -0.038 4.038 20 N -0.313 5.313 21 C 0.281 3.719 22 O -0.425 6.425 23 C 0.301 3.699 24 N -0.360 5.360 25 O -0.409 6.409 26 C -0.099 4.099 27 C -0.027 4.027 28 O -0.302 6.302 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.166 0.834 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.255 0.745 40 H 0.261 0.739 41 H 0.180 0.820 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.654 -1.562 26.341 26.395 hybrid contribution -0.183 0.432 -0.992 1.098 sum -0.837 -1.130 25.349 25.388 Atomic orbital electron populations 1.22333 0.95122 1.02638 1.02873 1.21705 0.94420 0.97569 0.88170 0.87471 1.60126 1.58411 1.08907 1.02648 1.21585 1.01163 0.95350 0.88689 1.20935 0.83270 0.88011 0.85169 1.90500 1.56520 1.18422 1.85462 1.41939 1.58391 1.12660 1.08249 1.19641 1.41920 0.95893 0.88733 0.90509 1.26017 0.97336 0.96611 1.01338 1.69667 1.48802 1.09595 1.28111 0.84950 0.78433 0.77822 0.77266 1.19568 1.19513 1.19936 1.22463 0.91090 0.83960 0.98133 0.90213 1.22401 0.96028 0.96265 0.89118 1.48173 1.39268 1.16812 1.26998 1.20342 0.80622 0.86945 0.84030 1.90756 1.55056 1.21426 1.75229 1.19849 0.79889 0.86597 0.83520 1.43404 1.47625 1.19314 1.25655 1.90401 1.55078 1.19026 1.76407 1.23929 0.95330 0.82056 1.08604 1.23112 0.92930 0.98194 0.88426 1.88002 1.75335 1.23717 1.43103 0.92437 0.92432 0.90317 0.83359 0.87681 0.91435 0.76966 0.91330 0.90516 0.88650 0.74473 0.73869 0.81977 0.91661 0.91726 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.02 71.98 0.65 -2.68 16 2 C 0.09 2.06 2.43 44.92 0.11 2.17 16 3 H 0.11 2.08 7.80 -2.39 -0.02 2.06 16 4 N -0.67 -20.88 4.86 -495.57 -2.41 -23.28 16 5 C 0.06 2.17 5.97 85.56 0.51 2.68 16 6 C 0.44 21.06 7.82 87.66 0.69 21.74 16 7 O -0.62 -35.14 15.78 -3.06 -0.05 -35.19 16 8 N -0.57 -29.83 5.29 -306.98 -1.62 -31.45 16 9 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 10 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 11 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 12 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 13 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.10 2.26 2.59 30.70 0.08 2.34 16 18 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.08 2.16 5.86 86.36 0.51 2.67 16 20 N -0.58 -13.80 3.02 -818.93 -2.47 -16.27 16 21 C 0.50 11.45 7.77 87.27 0.68 12.13 16 22 O -0.55 -14.61 15.97 -3.25 -0.05 -14.66 16 23 C 0.52 9.26 8.08 87.27 0.71 9.96 16 24 N -0.79 -7.39 8.87 -174.50 -1.55 -8.94 16 25 O -0.53 -11.02 13.88 -3.25 -0.05 -11.06 16 26 C 0.02 0.46 6.39 86.36 0.55 1.01 16 27 C 0.05 0.93 6.99 72.08 0.50 1.43 16 28 O -0.38 -9.13 9.58 -148.98 -1.43 -10.55 16 29 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 30 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.35 12.12 8.17 -89.69 -0.73 11.38 16 33 H 0.11 3.16 8.06 -2.39 -0.02 3.14 16 34 H 0.07 1.99 7.44 -2.39 -0.02 1.97 16 35 H 0.40 19.45 7.90 -92.70 -0.73 18.72 16 36 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.08 2.47 7.40 -2.39 -0.02 2.46 16 38 H 0.10 2.44 7.09 -2.39 -0.02 2.42 16 39 H 0.42 3.04 8.32 -92.71 -0.77 2.27 16 40 H 0.43 1.83 8.93 -92.70 -0.83 1.01 16 41 H 0.16 3.27 3.96 -72.85 -0.29 2.98 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.52 365.60 -3.30 -77.82 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -2.25 Total: 43.01 kcal Atomic # 6 Polarization: 28.57 SS G_CDS: 6.26 Total: 34.83 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -7.77 Total: -129.85 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: -1.57 Total: -71.46 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -74.52 -3.30 -77.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.440 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds