Wall clock time and date at job start Tue Mar 31 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47257 * 2 1 4 4 N 1.46900 * 109.47448 * 120.00097 * 2 1 3 5 5 C 1.46896 * 110.99859 * 275.54836 * 4 2 1 6 6 C 1.50705 * 109.47163 * 179.97438 * 5 4 2 7 7 O 1.21292 * 119.99724 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99977 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00089 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99985 * 359.97438 * 9 8 6 11 11 C 1.38952 * 120.00370 * 180.02562 * 9 8 6 12 12 N 1.31407 * 119.99786 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00295 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47029 * 59.99509 * 13 11 9 15 15 H 1.48489 * 109.47329 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46810 * 300.00074 * 13 11 9 17 17 C 1.53003 * 109.46858 * 239.99890 * 2 1 3 18 18 H 1.09001 * 109.51406 * 62.08510 * 17 2 1 19 19 C 1.53296 * 109.51253 * 182.18321 * 17 2 1 20 20 N 1.47154 * 108.38530 * 172.22595 * 19 17 2 21 21 C 1.34774 * 120.97880 * 129.44666 * 20 19 17 22 22 O 1.21349 * 120.00473 * 354.02362 * 21 20 19 23 23 C 1.49452 * 119.99867 * 174.02678 * 21 20 19 24 24 N 1.34777 * 120.00315 * 173.58324 * 23 21 20 25 25 O 1.21348 * 119.99905 * 353.58290 * 23 21 20 26 26 C 1.47155 * 118.03352 * 309.46620 * 20 19 17 27 27 C 1.53293 * 108.38435 * 50.53709 * 26 20 19 28 28 O 1.42958 * 109.26349 * 307.67126 * 27 26 20 29 29 H 1.09006 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47508 * 299.99895 * 1 2 3 31 31 H 1.08999 * 109.47564 * 59.99894 * 1 2 3 32 32 H 1.00900 * 111.00009 * 151.59197 * 4 2 1 33 33 H 1.09004 * 109.47340 * 300.00000 * 5 4 2 34 34 H 1.09003 * 109.47102 * 59.99656 * 5 4 2 35 35 H 0.97004 * 120.00228 * 359.97438 * 8 6 5 36 36 H 0.97000 * 120.00417 * 180.02562 * 12 11 9 37 37 H 1.09008 * 109.67944 * 52.50220 * 19 17 2 38 38 H 1.08999 * 109.71251 * 291.97067 * 19 17 2 39 39 H 0.96998 * 119.99518 * 359.97438 * 24 23 21 40 40 H 0.96997 * 119.99964 * 179.97438 * 24 23 21 41 41 H 1.08996 * 109.67940 * 290.80794 * 26 20 19 42 42 H 1.09005 * 109.70547 * 170.27597 * 26 20 19 43 43 H 1.08997 * 109.51277 * 67.61680 * 27 26 20 44 44 H 1.08998 * 109.50874 * 187.72027 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0702 0.2193 2.3500 6 6 2.5755 -0.5250 3.5590 7 8 2.8646 -1.6996 3.4709 8 7 2.7061 0.1146 4.7381 9 6 3.1663 -0.5623 5.8379 10 1 3.4238 -1.6083 5.7595 11 6 3.3005 0.0969 7.0537 12 7 2.9867 1.3694 7.1492 13 14 3.9268 -0.8257 8.5524 14 1 5.2882 -1.3511 8.2769 15 1 3.9785 0.0962 9.7153 16 1 3.0123 -1.9555 8.8559 17 6 2.0399 -0.7213 -1.2493 18 1 1.7078 -0.1869 -2.1393 19 6 3.5719 -0.7697 -1.2231 20 7 4.0282 -1.6256 -2.3298 21 6 4.9725 -1.1999 -3.1920 22 8 5.3814 -0.0591 -3.1294 23 6 5.5159 -2.1328 -4.2254 24 7 6.3627 -1.6746 -5.1685 25 8 5.1946 -3.3030 -4.2154 26 6 3.4227 -2.9597 -2.4673 27 6 1.8980 -2.8045 -2.4330 28 8 1.5261 -2.0561 -1.2731 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9214 -1.1129 1.0313 33 1 2.7411 1.0490 2.1270 34 1 1.0708 0.6046 2.5524 35 1 2.4752 1.0542 4.8085 36 1 3.0807 1.8298 7.9978 37 1 3.9098 -1.1857 -0.2738 38 1 3.9737 0.2359 -1.3469 39 1 6.6192 -0.7392 -5.1766 40 1 6.7157 -2.2802 -5.8389 41 1 3.7456 -3.5961 -1.6435 42 1 3.7252 -3.4047 -3.4153 43 1 1.5653 -2.2784 -3.3277 44 1 1.4326 -3.7894 -2.3955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485646595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:03 Heat of formation + Delta-G solvation = -120.748120 kcal Electronic energy + Delta-G solvation = -28567.079907 eV Core-core repulsion = 24327.734319 eV Total energy + Delta-G solvation = -4239.345588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34769 -39.67590 -38.54203 -38.15154 -36.25371 -35.29766 -33.97117 -33.86908 -31.78838 -31.12592 -29.88249 -28.61708 -26.46238 -25.42019 -24.23213 -23.84063 -22.40290 -20.44815 -20.12685 -19.27034 -18.38911 -17.86505 -17.70011 -16.93974 -16.68163 -16.58396 -16.01003 -15.70823 -15.52341 -15.21317 -14.89268 -14.51042 -14.44105 -14.31389 -14.08594 -13.70739 -13.55014 -13.27210 -13.15365 -12.63351 -12.40988 -11.98157 -11.78813 -11.64075 -11.55718 -11.53845 -11.30303 -11.04298 -10.89017 -10.81130 -10.41826 -10.40956 -10.33509 -10.17728 -9.64126 -9.46489 -8.91757 -8.39135 -8.00325 -7.91790 -6.38325 -3.78931 0.95794 1.95775 2.73985 3.17158 3.22760 3.28003 3.32697 3.54362 3.95032 3.99174 4.10575 4.32787 4.39976 4.64365 4.69607 4.82748 4.93698 5.15379 5.16431 5.21434 5.27994 5.33285 5.49558 5.52350 5.59760 5.71480 5.78738 5.81155 5.88015 6.02928 6.06268 6.14612 6.29679 6.42278 6.50205 6.76925 6.98199 7.28511 7.29755 7.54026 7.58326 7.70234 8.09894 8.65301 9.21503 9.58239 10.10107 10.79468 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.002536 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.933813 B =11040.143819 C =11739.596898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 H 0.057 0.943 4 N -0.656 5.656 5 C 0.048 3.952 6 C 0.442 3.558 7 O -0.581 6.581 8 N -0.565 5.565 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.083 3.917 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.577 5.577 21 C 0.505 3.495 22 O -0.521 6.521 23 C 0.518 3.482 24 N -0.819 5.819 25 O -0.512 6.512 26 C 0.033 3.967 27 C 0.046 3.954 28 O -0.351 6.351 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.348 0.652 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.415 0.585 40 H 0.412 0.588 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.050 0.950 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -1.300 -25.800 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.075 0.925 4 N -0.292 5.292 5 C -0.085 4.085 6 C 0.227 3.773 7 O -0.465 6.465 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.758 3.242 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.023 3.977 18 H 0.086 0.914 19 C -0.053 4.053 20 N -0.311 5.311 21 C 0.288 3.712 22 O -0.398 6.398 23 C 0.298 3.702 24 N -0.385 5.385 25 O -0.389 6.389 26 C -0.088 4.088 27 C -0.032 4.032 28 O -0.268 6.268 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.171 0.829 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.246 0.754 40 H 0.245 0.755 41 H 0.103 0.897 42 H 0.162 0.838 43 H 0.069 0.931 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.290 -2.399 -25.171 25.287 hybrid contribution 1.427 1.051 0.236 1.788 sum 1.717 -1.348 -24.936 25.031 Atomic orbital electron populations 1.21700 0.93495 1.03301 1.00806 1.21566 0.97353 0.94820 0.87986 0.92531 1.60120 1.34654 1.32258 1.02166 1.21767 1.01417 0.93872 0.91404 1.19802 0.84890 0.88192 0.84416 1.90529 1.54955 1.16256 1.84787 1.41855 1.57831 1.12625 1.07829 1.19652 1.39865 0.96607 0.86698 0.88004 1.25252 0.97710 0.95792 0.99201 1.69602 1.48664 1.09056 1.27112 0.85922 0.79411 0.78851 0.80062 1.19956 1.21008 1.19880 1.22629 0.91044 0.85158 0.98827 0.91374 1.22662 0.95832 0.97123 0.89668 1.47952 1.37464 1.17840 1.27823 1.19975 0.80975 0.87520 0.82779 1.90777 1.58941 1.18451 1.71604 1.20127 0.79789 0.87914 0.82396 1.43549 1.47593 1.16049 1.31296 1.90567 1.57323 1.17623 1.73357 1.23627 0.94045 0.82966 1.08159 1.23031 0.93571 0.97736 0.88832 1.88197 1.73140 1.23896 1.41606 0.90837 0.92374 0.93136 0.82928 0.93950 0.89445 0.77477 0.91861 0.89144 0.87737 0.75432 0.75530 0.89707 0.83770 0.93148 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.24 37.16 0.34 -1.28 16 2 C 0.09 1.17 2.52 -67.71 -0.17 1.00 16 3 H 0.06 0.64 7.81 -51.93 -0.41 0.24 16 4 N -0.66 -10.82 5.83 -107.99 -0.63 -11.45 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.59 7.82 -10.98 -0.09 10.50 16 7 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 8 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 9 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 10 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 13 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.08 0.94 2.58 -26.58 -0.07 0.88 16 18 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 19 C 0.07 0.82 5.81 -3.53 -0.02 0.80 16 20 N -0.58 -6.44 3.02 -172.78 -0.52 -6.96 16 21 C 0.51 5.59 7.76 -11.59 -0.09 5.50 16 22 O -0.52 -6.66 15.96 5.50 0.09 -6.57 16 23 C 0.52 4.68 8.04 -11.58 -0.09 4.59 16 24 N -0.82 -4.29 8.87 30.90 0.27 -4.02 16 25 O -0.51 -5.48 13.99 5.50 0.08 -5.41 16 26 C 0.03 0.34 6.19 -3.53 -0.02 0.31 16 27 C 0.05 0.44 6.98 37.31 0.26 0.70 16 28 O -0.35 -4.39 9.54 -35.23 -0.34 -4.73 16 29 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 30 H 0.06 0.71 7.42 -51.93 -0.39 0.33 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.35 6.00 5.66 -39.29 -0.22 5.78 16 33 H 0.04 0.67 8.06 -51.93 -0.42 0.26 16 34 H 0.09 1.45 7.40 -51.93 -0.38 1.06 16 35 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.09 1.20 5.88 -51.92 -0.31 0.90 16 38 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 39 H 0.41 1.72 8.32 -40.82 -0.34 1.38 16 40 H 0.41 1.25 8.93 -40.82 -0.36 0.88 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.15 1.40 4.36 -54.66 -0.24 1.16 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -34.68 362.89 -5.84 -40.52 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -5.77 Total: 15.72 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -0.22 Total: 15.74 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.21 Total: -61.08 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.08 Total: -32.69 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.68 -5.84 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.226 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds