Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47257 * 2 1 4 4 N 1.46900 * 109.47448 * 120.00097 * 2 1 3 5 5 C 1.46896 * 110.99859 * 275.54836 * 4 2 1 6 6 C 1.50705 * 109.47163 * 179.97438 * 5 4 2 7 7 O 1.21292 * 119.99724 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99977 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00089 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99985 * 359.97438 * 9 8 6 11 11 C 1.38952 * 120.00370 * 180.02562 * 9 8 6 12 12 N 1.31407 * 119.99786 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00295 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47029 * 59.99509 * 13 11 9 15 15 H 1.48489 * 109.47329 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46810 * 300.00074 * 13 11 9 17 17 C 1.53003 * 109.46858 * 239.99890 * 2 1 3 18 18 H 1.09001 * 109.51406 * 62.08510 * 17 2 1 19 19 C 1.53296 * 109.51253 * 182.18321 * 17 2 1 20 20 N 1.47154 * 108.38530 * 172.22595 * 19 17 2 21 21 C 1.34774 * 120.97880 * 129.44666 * 20 19 17 22 22 O 1.21349 * 120.00473 * 354.02362 * 21 20 19 23 23 C 1.49452 * 119.99867 * 174.02678 * 21 20 19 24 24 N 1.34777 * 120.00315 * 173.58324 * 23 21 20 25 25 O 1.21348 * 119.99905 * 353.58290 * 23 21 20 26 26 C 1.47155 * 118.03352 * 309.46620 * 20 19 17 27 27 C 1.53293 * 108.38435 * 50.53709 * 26 20 19 28 28 O 1.42958 * 109.26349 * 307.67126 * 27 26 20 29 29 H 1.09006 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47508 * 299.99895 * 1 2 3 31 31 H 1.08999 * 109.47564 * 59.99894 * 1 2 3 32 32 H 1.00900 * 111.00009 * 151.59197 * 4 2 1 33 33 H 1.09004 * 109.47340 * 300.00000 * 5 4 2 34 34 H 1.09003 * 109.47102 * 59.99656 * 5 4 2 35 35 H 0.97004 * 120.00228 * 359.97438 * 8 6 5 36 36 H 0.97000 * 120.00417 * 180.02562 * 12 11 9 37 37 H 1.09008 * 109.67944 * 52.50220 * 19 17 2 38 38 H 1.08999 * 109.71251 * 291.97067 * 19 17 2 39 39 H 0.96998 * 119.99518 * 359.97438 * 24 23 21 40 40 H 0.96997 * 119.99964 * 179.97438 * 24 23 21 41 41 H 1.08996 * 109.67940 * 290.80794 * 26 20 19 42 42 H 1.09005 * 109.70547 * 170.27597 * 26 20 19 43 43 H 1.08997 * 109.51277 * 67.61680 * 27 26 20 44 44 H 1.08998 * 109.50874 * 187.72027 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0702 0.2193 2.3500 6 6 2.5755 -0.5250 3.5590 7 8 2.8646 -1.6996 3.4709 8 7 2.7061 0.1146 4.7381 9 6 3.1663 -0.5623 5.8379 10 1 3.4238 -1.6083 5.7595 11 6 3.3005 0.0969 7.0537 12 7 2.9867 1.3694 7.1492 13 14 3.9268 -0.8257 8.5524 14 1 5.2882 -1.3511 8.2769 15 1 3.9785 0.0962 9.7153 16 1 3.0123 -1.9555 8.8559 17 6 2.0399 -0.7213 -1.2493 18 1 1.7078 -0.1869 -2.1393 19 6 3.5719 -0.7697 -1.2231 20 7 4.0282 -1.6256 -2.3298 21 6 4.9725 -1.1999 -3.1920 22 8 5.3814 -0.0591 -3.1294 23 6 5.5159 -2.1328 -4.2254 24 7 6.3627 -1.6746 -5.1685 25 8 5.1946 -3.3030 -4.2154 26 6 3.4227 -2.9597 -2.4673 27 6 1.8980 -2.8045 -2.4330 28 8 1.5261 -2.0561 -1.2731 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9214 -1.1129 1.0313 33 1 2.7411 1.0490 2.1270 34 1 1.0708 0.6046 2.5524 35 1 2.4752 1.0542 4.8085 36 1 3.0807 1.8298 7.9978 37 1 3.9098 -1.1857 -0.2738 38 1 3.9737 0.2359 -1.3469 39 1 6.6192 -0.7392 -5.1766 40 1 6.7157 -2.2802 -5.8389 41 1 3.7456 -3.5961 -1.6435 42 1 3.7252 -3.4047 -3.4153 43 1 1.5653 -2.2784 -3.3277 44 1 1.4326 -3.7894 -2.3955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485646595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -152.188258 kcal Electronic energy + Delta-G solvation = -28568.443254 eV Core-core repulsion = 24327.734319 eV Total energy + Delta-G solvation = -4240.708934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16511 -40.60045 -40.00453 -39.32279 -37.42052 -36.18586 -35.88478 -34.63211 -33.33235 -32.77142 -30.89339 -29.47730 -28.06266 -26.47188 -25.58163 -24.96313 -23.25373 -21.29508 -21.15385 -20.98450 -19.92397 -19.12490 -18.49624 -18.02900 -17.55237 -17.53819 -17.19247 -16.99597 -16.44806 -16.34861 -16.26170 -15.93192 -15.71567 -15.38110 -15.23261 -15.10564 -14.64257 -14.43371 -14.31505 -13.92064 -13.57762 -13.45200 -13.33192 -12.95623 -12.79718 -12.61438 -12.43749 -12.41929 -12.34640 -12.12199 -11.86478 -11.75394 -11.49902 -11.20843 -10.99219 -10.44584 -10.32447 -10.01090 -9.80002 -9.26776 -8.46151 -5.94792 0.17602 1.18674 1.39733 1.41296 1.52363 1.95423 2.06307 2.29269 2.44159 2.70171 2.91641 3.21117 3.36318 3.51333 3.52360 3.73853 3.84530 3.98442 4.15887 4.25718 4.31268 4.37928 4.43870 4.48182 4.60905 4.63112 4.68666 4.75814 4.90746 4.96262 4.99680 5.08307 5.40919 5.51738 5.59364 5.78706 5.89621 6.01407 6.08879 6.23618 6.41670 6.52569 6.61143 6.92155 7.13205 7.57068 8.12880 8.71108 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.002536 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.933813 B =11040.143819 C =11739.596898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.092 3.908 3 H 0.077 0.923 4 N -0.672 5.672 5 C 0.063 3.937 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.077 0.923 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.269 1.269 16 H -0.272 1.272 17 C 0.089 3.911 18 H 0.089 0.911 19 C 0.072 3.928 20 N -0.580 5.580 21 C 0.502 3.498 22 O -0.542 6.542 23 C 0.520 3.480 24 N -0.795 5.795 25 O -0.532 6.532 26 C 0.037 3.963 27 C 0.045 3.955 28 O -0.374 6.374 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.341 0.659 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.423 0.577 40 H 0.426 0.574 41 H 0.070 0.930 42 H 0.153 0.847 43 H 0.067 0.933 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -0.518 -27.128 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.018 4.018 3 H 0.095 0.905 4 N -0.308 5.308 5 C -0.069 4.069 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.211 5.211 9 C -0.464 4.464 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.194 1.194 16 H -0.198 1.198 17 C 0.030 3.970 18 H 0.107 0.893 19 C -0.051 4.051 20 N -0.313 5.313 21 C 0.285 3.715 22 O -0.420 6.420 23 C 0.299 3.701 24 N -0.361 5.361 25 O -0.411 6.411 26 C -0.084 4.084 27 C -0.032 4.032 28 O -0.293 6.293 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.255 0.745 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.170 0.830 43 H 0.085 0.915 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.176 -1.583 -26.544 26.592 hybrid contribution 1.484 0.809 0.566 1.783 sum 1.660 -0.773 -25.978 26.042 Atomic orbital electron populations 1.21668 0.92871 1.02374 1.01935 1.21715 0.97695 0.95613 0.86766 0.90512 1.60128 1.34448 1.32918 1.03344 1.21628 1.02440 0.93716 0.89155 1.20896 0.83170 0.87967 0.85445 1.90496 1.56388 1.18419 1.85657 1.41922 1.58294 1.12784 1.08060 1.19619 1.42130 0.96135 0.88506 0.90462 1.26029 0.97247 0.96648 1.01319 1.69661 1.48504 1.09855 1.28080 0.85003 0.78691 0.77858 0.76871 1.19747 1.19373 1.19762 1.22596 0.90411 0.85058 0.98901 0.89322 1.22554 0.96383 0.97086 0.89107 1.48044 1.37586 1.18057 1.27634 1.20377 0.80532 0.87602 0.83022 1.90760 1.59503 1.19365 1.72329 1.19805 0.80426 0.87232 0.82627 1.43409 1.45806 1.16753 1.30146 1.90559 1.58487 1.18079 1.73941 1.23645 0.94564 0.82310 1.07894 1.23193 0.93014 0.98411 0.88542 1.88167 1.73412 1.24529 1.43156 0.92759 0.92773 0.90456 0.83736 0.91415 0.87671 0.76938 0.91278 0.91212 0.87629 0.74485 0.73884 0.91191 0.83027 0.91461 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.24 71.98 0.67 -2.22 16 2 C 0.09 2.15 2.52 44.91 0.11 2.27 16 3 H 0.08 1.53 7.81 -2.39 -0.02 1.51 16 4 N -0.67 -21.90 5.83 -495.57 -2.89 -24.79 16 5 C 0.06 2.19 5.97 85.56 0.51 2.70 16 6 C 0.44 21.34 7.82 87.66 0.69 22.02 16 7 O -0.62 -35.59 15.78 -3.07 -0.05 -35.64 16 8 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 9 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 10 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 11 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 12 N -0.92 -50.22 13.05 21.66 0.28 -49.93 16 13 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 C 0.09 1.91 2.58 30.69 0.08 1.99 16 18 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 19 C 0.07 1.66 5.81 86.35 0.50 2.16 16 20 N -0.58 -12.64 3.02 -818.91 -2.47 -15.11 16 21 C 0.50 10.68 7.76 87.27 0.68 11.35 16 22 O -0.54 -13.37 15.96 -3.24 -0.05 -13.42 16 23 C 0.52 8.75 8.04 87.27 0.70 9.45 16 24 N -0.79 -6.84 8.87 -174.50 -1.55 -8.38 16 25 O -0.53 -10.83 13.99 -3.24 -0.05 -10.88 16 26 C 0.04 0.73 6.19 86.35 0.53 1.26 16 27 C 0.05 0.80 6.98 72.08 0.50 1.31 16 28 O -0.37 -9.04 9.54 -148.98 -1.42 -10.46 16 29 H 0.05 1.41 7.63 -2.38 -0.02 1.39 16 30 H 0.05 1.22 7.42 -2.39 -0.02 1.21 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.34 11.94 5.66 -89.69 -0.51 11.44 16 33 H 0.07 2.03 8.06 -2.39 -0.02 2.02 16 34 H 0.11 3.31 7.40 -2.39 -0.02 3.30 16 35 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 36 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.07 1.91 5.88 -2.38 -0.01 1.90 16 38 H 0.11 2.39 7.06 -2.39 -0.02 2.37 16 39 H 0.42 2.68 8.32 -92.71 -0.77 1.91 16 40 H 0.43 1.65 8.93 -92.71 -0.83 0.82 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.15 2.82 4.36 -45.74 -0.20 2.62 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -75.62 362.89 -3.47 -79.09 By element: Atomic # 1 Polarization: 43.85 SS G_CDS: -1.93 Total: 41.92 kcal Atomic # 6 Polarization: 27.29 SS G_CDS: 6.25 Total: 33.54 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -8.25 Total: -129.82 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -1.57 Total: -70.39 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.62 -3.47 -79.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485646595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.100 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds