Wall clock time and date at job start Tue Mar 31 2020 07:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 117.00158 * 2 1 4 4 O 1.20827 * 119.99782 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99972 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.54148 * 55.11234 * 5 3 2 7 7 C 1.53097 * 109.50663 * 295.00335 * 5 3 2 8 8 N 1.47022 * 109.25640 * 183.21824 * 7 5 3 9 9 C 1.46896 * 110.99630 * 182.38940 * 8 7 5 10 10 H 1.09001 * 109.46928 * 186.04401 * 9 8 7 11 11 C 1.53001 * 109.47503 * 306.04079 * 9 8 7 12 12 C 1.50703 * 109.47166 * 66.04827 * 9 8 7 13 13 O 1.21274 * 119.99829 * 342.46050 * 12 9 8 14 14 N 1.34778 * 119.99604 * 162.46049 * 12 9 8 15 15 C 1.46500 * 119.99401 * 183.63776 * 14 12 9 16 16 C 1.46491 * 120.00502 * 3.64455 * 14 12 9 17 17 C 1.50695 * 109.47687 * 94.92909 * 16 14 12 18 18 H 1.08003 * 119.99909 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00208 * 180.02562 * 17 16 14 20 20 N 1.31508 * 120.00193 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47272 * 59.99847 * 21 19 17 23 23 H 1.48503 * 109.47053 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47219 * 299.99622 * 21 19 17 25 25 C 1.47016 * 110.75083 * 58.61449 * 8 7 5 26 26 C 1.53101 * 109.25795 * 301.38128 * 25 8 7 27 27 H 1.08997 * 109.54308 * 296.89616 * 26 25 8 28 28 C 1.53001 * 109.50616 * 176.78579 * 26 25 8 29 29 O 1.43015 * 109.25367 * 56.85526 * 26 25 8 30 30 H 1.08996 * 109.46895 * 299.99903 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00120 * 1 2 3 32 32 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.51134 * 63.28387 * 7 5 3 34 34 H 1.08998 * 109.50660 * 303.14706 * 7 5 3 35 35 H 1.08995 * 109.46841 * 180.23872 * 11 9 8 36 36 H 1.08992 * 109.47511 * 300.24526 * 11 9 8 37 37 H 1.09002 * 109.46203 * 60.24605 * 11 9 8 38 38 H 1.09000 * 109.47151 * 275.11315 * 15 14 12 39 39 H 1.09001 * 109.47229 * 35.11383 * 15 14 12 40 40 H 1.08999 * 109.47159 * 155.11411 * 15 14 12 41 41 H 1.09000 * 109.46843 * 334.92521 * 16 14 12 42 42 H 1.09000 * 109.47340 * 214.93495 * 16 14 12 43 43 H 0.96999 * 120.00245 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50915 * 61.32002 * 25 8 7 45 45 H 1.09004 * 109.50202 * 181.45135 * 25 8 7 46 46 H 1.09004 * 109.46942 * 300.22106 * 28 26 25 47 47 H 1.09003 * 109.46754 * 60.21471 * 28 26 25 48 48 H 1.08994 * 109.47435 * 180.21911 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9616 0.7069 -0.8418 7 6 4.1083 0.6927 1.3088 8 7 5.5706 0.8424 1.3371 9 6 6.1374 0.2443 2.5532 10 1 7.2044 0.4621 2.6018 11 6 5.4407 0.8308 3.7826 12 6 5.9304 -1.2481 2.5225 13 8 5.1105 -1.7312 1.7707 14 7 6.6564 -2.0458 3.3306 15 6 6.5126 -3.5012 3.2446 16 6 7.5891 -1.4577 4.2950 17 6 6.9097 -1.3233 5.6334 18 1 5.8853 -1.6436 5.7535 19 6 7.5955 -0.7906 6.7043 20 7 8.8427 -0.4001 6.5580 21 14 6.7530 -0.6234 8.3631 22 1 6.3285 -1.9641 8.8401 23 1 7.6986 -0.0273 9.3408 24 1 5.5624 0.2536 8.2275 25 6 5.9517 2.2574 1.2189 26 6 5.3913 2.8237 -0.0885 27 1 5.8395 2.3016 -0.9338 28 6 5.7160 4.3161 -0.1794 29 8 3.9730 2.6413 -0.1118 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8494 -0.3641 1.3718 34 1 3.6714 1.2261 2.1530 35 1 5.8643 0.3901 4.6850 36 1 5.5869 1.9107 3.8025 37 1 4.3745 0.6092 3.7360 38 1 5.6697 -3.8199 3.8578 39 1 6.3367 -3.7883 2.2079 40 1 7.4243 -3.9783 3.6040 41 1 7.9007 -0.4735 3.9453 42 1 8.4631 -2.1014 4.3942 43 1 9.3251 -0.0249 7.3113 44 1 5.5443 2.8158 2.0617 45 1 7.0384 2.3425 1.2162 46 1 5.2689 4.8375 0.6670 47 1 6.7971 4.4544 -0.1614 48 1 5.3135 4.7196 -1.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338340310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:33 Heat of formation + Delta-G solvation = -142.405231 kcal Electronic energy + Delta-G solvation = -30365.553354 eV Core-core repulsion = 26228.808987 eV Total energy + Delta-G solvation = -4136.744367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84908 -39.89862 -38.76070 -36.53021 -35.80283 -35.04540 -33.07193 -32.62968 -30.96061 -29.07676 -27.73954 -27.41973 -26.31857 -25.65625 -24.25624 -23.09420 -22.07926 -21.21787 -20.14236 -18.31593 -17.71505 -17.09952 -16.85582 -16.62844 -16.39255 -15.99521 -15.70598 -15.38678 -14.86232 -14.71888 -14.55982 -14.21550 -13.97762 -13.59141 -13.26721 -13.11190 -12.77023 -12.62500 -12.47338 -12.43599 -12.18322 -12.07155 -11.97254 -11.92084 -11.63726 -11.46427 -11.26270 -11.08859 -10.98725 -10.88088 -10.83157 -10.76939 -10.72992 -10.19041 -10.17185 -9.88374 -9.72565 -8.87281 -8.64057 -8.10903 -7.75604 -6.28165 -4.34819 2.10124 2.28363 3.17752 3.23592 3.24724 3.33244 3.58803 3.86545 4.20381 4.27778 4.67766 4.77570 4.87495 4.99280 5.02644 5.03951 5.08062 5.08968 5.20596 5.27148 5.40135 5.46291 5.52459 5.54707 5.61549 5.70660 5.82557 5.92035 5.98481 6.05035 6.13427 6.14963 6.21640 6.24783 6.31599 6.38054 6.70036 6.82206 6.95229 7.01437 7.15685 7.22819 7.47162 7.66364 7.70539 7.95127 8.27793 8.69499 8.96725 9.31773 10.77888 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.003756 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.984201 B = 7453.484623 C = 8056.748188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.473 3.527 4 O -0.491 6.491 5 C 0.109 3.891 6 H 0.105 0.895 7 C 0.016 3.984 8 N -0.515 5.515 9 C 0.074 3.926 10 H 0.109 0.891 11 C -0.197 4.197 12 C 0.525 3.475 13 O -0.561 6.561 14 N -0.598 5.598 15 C 0.099 3.901 16 C 0.234 3.766 17 C -0.538 4.538 18 H 0.062 0.938 19 C 0.068 3.932 20 N -0.887 5.887 21 Si 0.894 3.106 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.016 3.984 26 C 0.094 3.906 27 H 0.071 0.929 28 C -0.142 4.142 29 O -0.364 6.364 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.045 0.955 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.035 0.965 43 H 0.267 0.733 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 3.353 -11.560 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.314 3.686 4 O -0.377 6.377 5 C 0.050 3.950 6 H 0.122 0.878 7 C -0.112 4.112 8 N -0.240 5.240 9 C -0.036 4.036 10 H 0.127 0.873 11 C -0.256 4.256 12 C 0.313 3.687 13 O -0.442 6.442 14 N -0.329 5.329 15 C -0.045 4.045 16 C 0.114 3.886 17 C -0.576 4.576 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.112 4.112 26 C 0.036 3.964 27 H 0.089 0.911 28 C -0.200 4.200 29 O -0.283 6.283 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.090 3.363 -12.247 14.546 hybrid contribution -0.624 0.455 1.907 2.058 sum -7.715 3.819 -10.340 13.454 Atomic orbital electron populations 1.23296 0.76044 1.03876 1.02491 1.86541 1.23460 1.32498 1.84021 1.23149 0.91054 0.81651 0.72758 1.90664 1.66725 1.36320 1.44028 1.21379 0.87251 0.85291 1.01120 0.87767 1.23091 0.88506 1.05550 0.94070 1.62182 1.09548 1.14425 1.37805 1.21556 1.01039 0.92382 0.88646 0.87286 1.22644 1.00810 1.00968 1.01141 1.20124 0.80674 0.88391 0.79539 1.90469 1.35567 1.76325 1.41806 1.48083 1.41920 1.06052 1.36814 1.21397 1.01271 0.80867 1.00941 1.19535 0.88061 0.94564 0.86434 1.21391 0.99425 1.42366 0.94420 0.91983 1.24934 0.94770 0.94934 0.98985 1.69898 1.09481 1.41006 1.32121 0.86611 0.79379 0.78684 0.83198 1.20044 1.21059 1.20011 1.22920 1.01738 0.88814 0.97716 1.22241 0.80053 0.97045 0.97021 0.91113 1.21738 1.01819 0.93216 1.03211 1.87990 1.22891 1.22923 1.94545 0.91824 0.91920 0.87795 0.84713 0.93642 0.86326 0.92646 0.93000 0.93559 0.92279 0.91548 0.94136 0.94682 0.92317 0.93167 0.89135 0.91677 0.90520 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.82 10.56 -39.26 -0.41 -5.24 16 3 C 0.47 7.30 7.29 36.00 0.26 7.57 16 4 O -0.49 -8.65 16.26 -25.46 -0.41 -9.06 16 5 C 0.11 1.63 3.33 -27.84 -0.09 1.54 16 6 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 7 C 0.02 0.26 3.94 -3.71 -0.01 0.24 16 8 N -0.52 -8.27 4.55 -227.71 -1.04 -9.31 16 9 C 0.07 1.32 1.90 -68.86 -0.13 1.19 16 10 H 0.11 1.93 6.48 -51.93 -0.34 1.59 16 11 C -0.20 -3.58 8.26 37.16 0.31 -3.27 16 12 C 0.53 10.51 6.84 -10.98 -0.08 10.43 16 13 O -0.56 -11.91 13.44 5.56 0.07 -11.83 16 14 N -0.60 -12.11 2.86 -182.96 -0.52 -12.63 16 15 C 0.10 1.75 10.38 59.85 0.62 2.37 16 16 C 0.23 5.22 4.74 -5.20 -0.02 5.19 16 17 C -0.54 -13.08 6.89 -34.44 -0.24 -13.32 16 18 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 19 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -23.18 13.29 55.43 0.74 -22.44 16 21 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 C 0.02 0.22 4.67 -3.71 -0.02 0.20 16 26 C 0.09 1.17 3.43 -26.68 -0.09 1.08 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.14 -1.41 9.57 37.16 0.36 -1.05 16 29 O -0.36 -5.53 9.65 -55.11 -0.53 -6.06 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.14 2.47 5.28 -51.94 -0.27 2.20 16 34 H 0.05 0.78 6.37 -51.93 -0.33 0.44 16 35 H 0.12 2.48 4.75 -51.93 -0.25 2.24 16 36 H 0.05 0.91 6.72 -51.93 -0.35 0.57 16 37 H 0.05 0.94 6.40 -51.93 -0.33 0.61 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.00 7.64 -51.93 -0.40 0.60 16 40 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 41 H 0.04 0.92 5.72 -51.93 -0.30 0.62 16 42 H 0.04 0.83 7.94 -51.93 -0.41 0.41 16 43 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.05 0.71 6.71 -51.93 -0.35 0.36 16 45 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -29.42 378.08 -7.10 -36.52 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.50 Total: 4.45 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 1.83 Total: 15.20 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.82 Total: -44.38 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.29 Total: -32.19 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.42 -7.10 -36.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338340310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.882 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds