Wall clock time and date at job start Tue Mar 31 2020 07:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 117.00158 * 2 1 4 4 O 1.20827 * 119.99782 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99972 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.54148 * 55.11234 * 5 3 2 7 7 C 1.53097 * 109.50663 * 295.00335 * 5 3 2 8 8 N 1.47022 * 109.25640 * 183.21824 * 7 5 3 9 9 C 1.46896 * 110.99630 * 182.38940 * 8 7 5 10 10 H 1.09001 * 109.46928 * 186.04401 * 9 8 7 11 11 C 1.53001 * 109.47503 * 306.04079 * 9 8 7 12 12 C 1.50703 * 109.47166 * 66.04827 * 9 8 7 13 13 O 1.21274 * 119.99829 * 342.46050 * 12 9 8 14 14 N 1.34778 * 119.99604 * 162.46049 * 12 9 8 15 15 C 1.46500 * 119.99401 * 183.63776 * 14 12 9 16 16 C 1.46491 * 120.00502 * 3.64455 * 14 12 9 17 17 C 1.50695 * 109.47687 * 94.92909 * 16 14 12 18 18 H 1.08003 * 119.99909 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00208 * 180.02562 * 17 16 14 20 20 N 1.31508 * 120.00193 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47272 * 59.99847 * 21 19 17 23 23 H 1.48503 * 109.47053 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47219 * 299.99622 * 21 19 17 25 25 C 1.47016 * 110.75083 * 58.61449 * 8 7 5 26 26 C 1.53101 * 109.25795 * 301.38128 * 25 8 7 27 27 H 1.08997 * 109.54308 * 296.89616 * 26 25 8 28 28 C 1.53001 * 109.50616 * 176.78579 * 26 25 8 29 29 O 1.43015 * 109.25367 * 56.85526 * 26 25 8 30 30 H 1.08996 * 109.46895 * 299.99903 * 1 2 3 31 31 H 1.09001 * 109.47018 * 60.00120 * 1 2 3 32 32 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.51134 * 63.28387 * 7 5 3 34 34 H 1.08998 * 109.50660 * 303.14706 * 7 5 3 35 35 H 1.08995 * 109.46841 * 180.23872 * 11 9 8 36 36 H 1.08992 * 109.47511 * 300.24526 * 11 9 8 37 37 H 1.09002 * 109.46203 * 60.24605 * 11 9 8 38 38 H 1.09000 * 109.47151 * 275.11315 * 15 14 12 39 39 H 1.09001 * 109.47229 * 35.11383 * 15 14 12 40 40 H 1.08999 * 109.47159 * 155.11411 * 15 14 12 41 41 H 1.09000 * 109.46843 * 334.92521 * 16 14 12 42 42 H 1.09000 * 109.47340 * 214.93495 * 16 14 12 43 43 H 0.96999 * 120.00245 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50915 * 61.32002 * 25 8 7 45 45 H 1.09004 * 109.50202 * 181.45135 * 25 8 7 46 46 H 1.09004 * 109.46942 * 300.22106 * 28 26 25 47 47 H 1.09003 * 109.46754 * 60.21471 * 28 26 25 48 48 H 1.08994 * 109.47435 * 180.21911 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9616 0.7069 -0.8418 7 6 4.1083 0.6927 1.3088 8 7 5.5706 0.8424 1.3371 9 6 6.1374 0.2443 2.5532 10 1 7.2044 0.4621 2.6018 11 6 5.4407 0.8308 3.7826 12 6 5.9304 -1.2481 2.5225 13 8 5.1105 -1.7312 1.7707 14 7 6.6564 -2.0458 3.3306 15 6 6.5126 -3.5012 3.2446 16 6 7.5891 -1.4577 4.2950 17 6 6.9097 -1.3233 5.6334 18 1 5.8853 -1.6436 5.7535 19 6 7.5955 -0.7906 6.7043 20 7 8.8427 -0.4001 6.5580 21 14 6.7530 -0.6234 8.3631 22 1 6.3285 -1.9641 8.8401 23 1 7.6986 -0.0273 9.3408 24 1 5.5624 0.2536 8.2275 25 6 5.9517 2.2574 1.2189 26 6 5.3913 2.8237 -0.0885 27 1 5.8395 2.3016 -0.9338 28 6 5.7160 4.3161 -0.1794 29 8 3.9730 2.6413 -0.1118 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8494 -0.3641 1.3718 34 1 3.6714 1.2261 2.1530 35 1 5.8643 0.3901 4.6850 36 1 5.5869 1.9107 3.8025 37 1 4.3745 0.6092 3.7360 38 1 5.6697 -3.8199 3.8578 39 1 6.3367 -3.7883 2.2079 40 1 7.4243 -3.9783 3.6040 41 1 7.9007 -0.4735 3.9453 42 1 8.4631 -2.1014 4.3942 43 1 9.3251 -0.0249 7.3113 44 1 5.5443 2.8158 2.0617 45 1 7.0384 2.3425 1.2162 46 1 5.2689 4.8375 0.6670 47 1 6.7971 4.4544 -0.1614 48 1 5.3135 4.7196 -1.1085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338340310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:32 Heat of formation + Delta-G solvation = -161.006850 kcal Electronic energy + Delta-G solvation = -30366.359981 eV Core-core repulsion = 26228.808987 eV Total energy + Delta-G solvation = -4137.550994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06026 -41.24695 -40.07961 -37.71663 -37.10669 -36.71961 -34.51306 -34.09334 -32.30312 -30.20076 -29.44663 -28.39118 -27.87894 -26.80085 -25.55941 -24.87290 -23.31248 -22.36051 -21.31485 -19.86755 -18.89091 -18.57745 -18.27170 -18.14918 -17.55100 -17.25734 -17.11522 -16.59363 -16.46113 -16.15546 -15.94540 -15.56282 -15.25365 -14.81311 -14.62685 -14.34423 -14.27971 -13.92884 -13.67450 -13.64490 -13.54207 -13.35987 -13.20815 -13.09184 -12.94905 -12.89488 -12.72177 -12.58892 -12.50637 -12.45085 -12.09820 -11.97154 -11.90395 -11.89536 -11.71547 -11.37601 -10.95265 -10.58941 -10.31614 -9.49534 -9.37668 -8.19407 -6.30818 0.89805 1.24251 1.42197 1.44788 1.50470 1.74466 2.16588 2.41900 2.68858 2.97614 3.11444 3.52269 3.62492 3.74061 3.76857 3.87484 4.07174 4.13608 4.17757 4.22887 4.26177 4.28211 4.38301 4.53121 4.62512 4.64968 4.65843 4.69765 4.71175 4.79049 4.81458 4.89723 4.94042 5.02353 5.04874 5.16000 5.21125 5.27657 5.35514 5.65649 5.76730 5.81039 5.88914 5.98549 6.06927 6.55522 6.58436 6.82085 7.31427 7.42732 8.85522 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.003756 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.984201 B = 7453.484623 C = 8056.748188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.518 6.518 5 C 0.113 3.887 6 H 0.117 0.883 7 C 0.025 3.975 8 N -0.516 5.516 9 C 0.081 3.919 10 H 0.112 0.888 11 C -0.187 4.187 12 C 0.520 3.480 13 O -0.573 6.573 14 N -0.604 5.604 15 C 0.096 3.904 16 C 0.248 3.752 17 C -0.537 4.537 18 H 0.052 0.948 19 C 0.030 3.970 20 N -0.914 5.914 21 Si 0.945 3.055 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.015 3.985 26 C 0.091 3.909 27 H 0.082 0.918 28 C -0.137 4.137 29 O -0.379 6.379 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.022 0.978 43 H 0.268 0.732 44 H 0.044 0.956 45 H 0.109 0.891 46 H 0.057 0.943 47 H 0.100 0.900 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 3.744 -12.140 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.406 6.406 5 C 0.053 3.947 6 H 0.135 0.865 7 C -0.103 4.103 8 N -0.240 5.240 9 C -0.030 4.030 10 H 0.130 0.870 11 C -0.245 4.245 12 C 0.308 3.692 13 O -0.455 6.455 14 N -0.334 5.334 15 C -0.047 4.047 16 C 0.127 3.873 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.171 4.171 20 N -0.553 5.553 21 Si 0.771 3.229 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.113 4.113 26 C 0.034 3.966 27 H 0.100 0.900 28 C -0.194 4.194 29 O -0.299 6.299 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.127 0.873 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.192 3.735 -12.837 15.181 hybrid contribution -0.644 0.282 2.043 2.161 sum -7.835 4.017 -10.794 13.930 Atomic orbital electron populations 1.23649 0.73943 1.06064 1.02854 1.86533 1.25593 1.31634 1.83455 1.23251 0.91250 0.81701 0.72018 1.90643 1.67303 1.37190 1.45487 1.21342 0.87139 0.85576 1.00614 0.86529 1.22888 0.88733 1.04154 0.94569 1.62195 1.09211 1.16127 1.36486 1.21447 1.01197 0.91101 0.89281 0.87024 1.22494 1.00228 1.01727 1.00073 1.20520 0.80242 0.89320 0.79115 1.90467 1.35958 1.76849 1.42247 1.48130 1.41653 1.07135 1.36501 1.21515 1.01892 0.79657 1.01588 1.19233 0.87731 0.94170 0.86145 1.21502 0.98905 1.41774 0.95393 0.93017 1.25495 0.95205 0.94845 1.01583 1.69970 1.10447 1.41958 1.32894 0.85805 0.78511 0.78501 0.80079 1.19961 1.20787 1.19871 1.23067 1.02947 0.86999 0.98251 1.22492 0.78735 0.98813 0.96605 0.89993 1.21760 1.03378 0.91114 1.03194 1.87998 1.24595 1.22773 1.94505 0.91991 0.91092 0.84741 0.86677 0.94831 0.88914 0.91136 0.93525 0.93734 0.91364 0.90265 0.94448 0.95978 0.92277 0.93788 0.87273 0.92391 0.88109 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.60 10.56 -51.42 -0.54 -10.15 16 3 C 0.48 14.50 7.29 71.23 0.52 15.02 16 4 O -0.52 -18.12 16.26 28.37 0.46 -17.66 16 5 C 0.11 3.29 3.33 29.88 0.10 3.39 16 6 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 7 C 0.02 0.80 3.94 86.31 0.34 1.14 16 8 N -0.52 -16.04 4.55 -874.35 -3.98 -20.02 16 9 C 0.08 2.82 1.90 44.17 0.08 2.91 16 10 H 0.11 3.86 6.48 -2.39 -0.02 3.84 16 11 C -0.19 -6.73 8.26 71.98 0.59 -6.13 16 12 C 0.52 20.61 6.84 87.66 0.60 21.21 16 13 O -0.57 -24.14 13.44 -3.01 -0.04 -24.18 16 14 N -0.60 -24.25 2.86 -851.17 -2.43 -26.68 16 15 C 0.10 3.35 10.38 127.77 1.33 4.68 16 16 C 0.25 11.04 4.74 85.63 0.41 11.45 16 17 C -0.54 -26.10 6.89 25.60 0.18 -25.93 16 18 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 19 C 0.03 1.49 5.46 84.66 0.46 1.95 16 20 N -0.91 -47.50 13.29 21.45 0.28 -47.22 16 21 Si 0.94 40.08 29.54 68.60 2.03 42.10 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 C 0.01 0.38 4.67 86.31 0.40 0.78 16 26 C 0.09 2.07 3.43 30.63 0.10 2.18 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 C -0.14 -2.39 9.57 71.98 0.69 -1.70 16 29 O -0.38 -11.07 9.65 -129.97 -1.25 -12.32 16 30 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 31 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.12 4.23 5.28 -2.39 -0.01 4.22 16 34 H 0.03 1.15 6.37 -2.39 -0.02 1.14 16 35 H 0.09 3.89 4.75 -2.39 -0.01 3.88 16 36 H 0.07 2.28 6.72 -2.39 -0.02 2.27 16 37 H 0.05 1.69 6.40 -2.39 -0.02 1.68 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 2.24 7.64 -2.39 -0.02 2.22 16 40 H 0.08 2.52 7.89 -2.39 -0.02 2.50 16 41 H 0.04 1.70 5.72 -2.39 -0.01 1.68 16 42 H 0.02 1.04 7.94 -2.39 -0.02 1.03 16 43 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 44 H 0.04 1.18 6.71 -2.39 -0.02 1.17 16 45 H 0.11 2.36 8.09 -2.38 -0.02 2.34 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -61.73 378.08 2.49 -59.24 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.96 Total: 24.22 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 7.00 Total: 32.66 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -6.13 Total: -93.92 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -1.38 Total: -64.30 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -61.73 2.49 -59.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338340310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.763 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds