Wall clock time and date at job start Tue Mar 31 2020 07:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99700 * 2 1 4 4 C 1.52999 * 109.46571 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.51625 * 54.90002 * 4 3 2 6 6 C 1.53298 * 109.51251 * 174.99878 * 4 3 2 7 7 N 1.47149 * 108.38397 * 172.27304 * 6 4 3 8 8 C 1.34783 * 120.98024 * 129.44495 * 7 6 4 9 9 O 1.21340 * 120.00005 * 187.88383 * 8 7 6 10 10 C 1.49455 * 119.99769 * 7.88460 * 8 7 6 11 11 O 1.21352 * 119.99911 * 6.68506 * 10 8 7 12 12 N 1.34769 * 119.99721 * 186.67853 * 10 8 7 13 13 C 1.46505 * 120.00041 * 180.27500 * 12 10 8 14 14 C 1.52995 * 109.47562 * 179.72946 * 13 12 10 15 15 C 1.53001 * 109.47368 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47005 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99923 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00278 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99783 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47049 * 90.00414 * 20 18 16 22 22 H 1.48504 * 109.47006 * 209.99913 * 20 18 16 23 23 H 1.48500 * 109.47434 * 330.00208 * 20 18 16 24 24 C 1.47150 * 118.03894 * 309.71508 * 7 6 4 25 25 C 1.52875 * 108.60728 * 50.23025 * 24 7 6 26 26 H 1.09001 * 109.58802 * 187.92277 * 25 24 7 27 27 C 1.53005 * 109.41152 * 67.83702 * 25 24 7 28 28 O 1.42968 * 109.55378 * 294.77008 * 4 3 2 29 29 H 1.09000 * 109.47414 * 59.99841 * 1 2 3 30 30 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46678 * 300.00052 * 1 2 3 32 32 H 1.08998 * 109.47143 * 60.00543 * 3 2 1 33 33 H 1.08997 * 109.47132 * 300.00253 * 3 2 1 34 34 H 1.09004 * 109.67974 * 52.55576 * 6 4 3 35 35 H 1.08996 * 109.71566 * 292.01910 * 6 4 3 36 36 H 0.96994 * 120.00604 * 0.02562 * 12 10 8 37 37 H 1.09008 * 109.46907 * 299.73045 * 13 12 10 38 38 H 1.09000 * 109.47223 * 59.72620 * 13 12 10 39 39 H 1.09008 * 109.47090 * 299.99986 * 14 13 12 40 40 H 1.09000 * 109.47117 * 59.99609 * 14 13 12 41 41 H 1.09001 * 109.46912 * 299.99502 * 15 14 13 42 42 H 1.08997 * 109.47023 * 59.99610 * 15 14 13 43 43 H 0.96999 * 120.00015 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.68279 * 170.00953 * 24 7 6 45 45 H 1.09000 * 109.68175 * 290.56426 * 24 7 6 46 46 H 1.08996 * 109.47105 * 300.23303 * 27 25 24 47 47 H 1.08999 * 109.46310 * 60.22947 * 27 25 24 48 48 H 1.08994 * 109.47121 * 180.22682 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5671 -0.8414 6 6 4.1595 2.5791 -0.1266 7 7 5.6136 2.4556 0.0620 8 6 6.4762 2.9961 -0.8214 9 8 7.6637 2.7642 -0.7295 10 6 5.9700 3.8813 -1.9141 11 8 4.8025 4.2115 -1.9356 12 7 6.8102 4.3127 -2.8755 13 6 6.3155 5.1852 -3.9433 14 6 7.4643 5.5317 -4.8924 15 6 6.9477 6.4435 -6.0071 16 6 8.0793 6.7842 -6.9423 17 1 9.0681 6.3901 -6.7596 18 6 7.8524 7.5997 -8.0306 19 7 8.8399 7.8975 -8.8465 20 14 6.1422 8.2817 -8.3462 21 1 5.9934 9.5858 -7.6515 22 1 5.9473 8.4734 -9.8059 23 1 5.1263 7.3283 -7.8321 24 6 6.0982 1.7192 1.2402 25 6 5.3798 0.3712 1.3024 26 1 5.6201 -0.1279 2.2412 27 6 5.8325 -0.5009 0.1295 28 8 3.9683 0.5839 1.2223 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.7450 3.2372 0.6371 35 1 3.9509 2.9874 -1.1155 36 1 7.7434 4.0485 -2.8585 37 1 5.5291 4.6719 -4.4968 38 1 5.9150 6.1009 -3.5080 39 1 8.2507 6.0450 -4.3388 40 1 7.8647 4.6161 -5.3276 41 1 6.1612 5.9306 -6.5608 42 1 6.5476 7.3590 -5.5715 43 1 8.6802 8.4710 -9.6123 44 1 7.1729 1.5576 1.1557 45 1 5.8821 2.2892 2.1438 46 1 5.5936 -0.0003 -0.8088 47 1 6.9086 -0.6626 0.1913 48 1 5.3178 -1.4608 0.1707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343145708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:58 Heat of formation + Delta-G solvation = -148.516582 kcal Electronic energy + Delta-G solvation = -28560.125868 eV Core-core repulsion = 24423.116493 eV Total energy + Delta-G solvation = -4137.009375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35312 -39.78933 -38.53610 -37.86525 -36.12632 -34.94900 -33.45359 -33.33884 -31.54416 -30.43206 -28.12123 -27.68277 -27.07569 -25.55199 -24.40290 -23.11790 -22.22678 -20.93153 -20.38661 -19.67068 -18.10854 -17.53722 -17.15201 -16.80549 -16.68485 -16.58499 -16.04519 -15.75131 -15.58888 -15.21670 -15.08233 -14.82131 -14.61588 -14.25009 -14.14174 -13.83972 -13.55441 -13.07753 -12.81213 -12.75215 -12.65245 -12.32804 -12.15712 -12.02997 -11.97925 -11.75274 -11.58680 -11.44876 -11.16920 -10.97317 -10.90803 -10.46006 -10.19437 -10.04664 -9.98088 -9.80662 -9.42389 -9.27763 -9.15697 -8.96908 -8.59439 -6.09617 -4.08890 1.21568 2.02679 2.95953 3.14688 3.21968 3.27683 3.35572 3.38289 3.46641 4.17380 4.30106 4.40425 4.46408 4.57436 4.61623 4.72819 4.81549 4.95181 4.99667 5.01422 5.06998 5.12485 5.20433 5.23873 5.30684 5.32061 5.36059 5.45466 5.49413 5.52319 5.57284 5.80321 5.85793 5.87713 6.13560 6.32640 6.48612 6.65391 6.68692 6.73490 6.81495 7.10850 7.15819 7.28696 7.51943 7.71077 7.85147 8.46359 8.94305 9.51972 11.03561 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.002299 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.253806 B =12177.741449 C =13431.376752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.072 3.928 4 C 0.075 3.925 5 H 0.076 0.924 6 C 0.050 3.950 7 N -0.585 5.585 8 C 0.512 3.488 9 O -0.515 6.515 10 C 0.504 3.496 11 O -0.520 6.520 12 N -0.687 5.687 13 C 0.110 3.890 14 C -0.116 4.116 15 C -0.010 4.010 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.077 3.923 25 C 0.076 3.924 26 H 0.117 0.883 27 C -0.183 4.183 28 O -0.363 6.363 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 -16.290 22.716 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.005 4.005 4 C 0.016 3.984 5 H 0.094 0.906 6 C -0.072 4.072 7 N -0.320 5.320 8 C 0.295 3.705 9 O -0.390 6.390 10 C 0.284 3.716 11 O -0.399 6.399 12 N -0.337 5.337 13 C -0.012 4.012 14 C -0.154 4.154 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.540 5.540 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.045 4.045 25 C 0.018 3.982 26 H 0.135 0.865 27 C -0.241 4.241 28 O -0.282 6.282 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.166 0.834 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.376 -16.272 22.699 30.967 hybrid contribution -0.404 0.655 -0.374 0.855 sum -13.781 -15.617 22.325 30.532 Atomic orbital electron populations 1.22762 0.80814 1.02883 1.00086 1.87924 1.19743 1.27114 1.95443 1.22423 0.90986 0.85583 1.01535 1.22527 0.93323 0.93596 0.88952 0.90621 1.23335 0.78546 0.96745 1.08544 1.47811 1.07096 1.53098 1.23978 1.20251 0.86172 0.81162 0.82956 1.90763 1.15598 1.59601 1.73081 1.19996 0.86380 0.82071 0.83137 1.90505 1.16400 1.57326 1.75665 1.46066 1.13791 1.48597 1.25291 1.21893 0.98810 0.93192 0.87272 1.21751 0.96027 1.01069 0.96520 1.19500 0.97500 0.94324 0.93461 1.21080 0.96208 1.30284 1.08574 0.90937 1.25035 0.96874 0.95827 0.95762 1.69910 1.31614 1.37194 1.15309 0.86770 0.85293 0.79815 0.77358 1.20246 1.21353 1.18922 1.22418 1.01443 0.93049 0.87606 1.22510 0.81325 0.93957 1.00441 0.86511 1.22381 1.02331 1.00512 0.98832 1.88070 1.21688 1.81363 1.37105 0.93921 0.89546 0.93972 0.92094 0.91116 0.90151 0.83408 0.75032 0.90942 0.90955 0.91775 0.91759 0.96241 0.96672 0.92651 0.87611 0.90040 0.92191 0.91102 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.77 10.67 -39.66 -0.42 -4.19 16 3 C 0.07 0.60 5.61 37.16 0.21 0.81 16 4 C 0.07 0.70 2.67 -26.58 -0.07 0.63 16 5 H 0.08 0.76 6.25 -51.93 -0.32 0.44 16 6 C 0.05 0.48 5.43 -3.53 -0.02 0.46 16 7 N -0.59 -6.15 2.55 -173.04 -0.44 -6.59 16 8 C 0.51 6.44 7.75 -11.58 -0.09 6.35 16 9 O -0.52 -7.32 15.97 5.51 0.09 -7.23 16 10 C 0.50 6.78 7.74 -11.59 -0.09 6.69 16 11 O -0.52 -7.51 13.21 5.50 0.07 -7.44 16 12 N -0.69 -9.25 5.55 -60.73 -0.34 -9.59 16 13 C 0.11 1.67 5.67 -4.04 -0.02 1.64 16 14 C -0.12 -2.06 5.27 -26.73 -0.14 -2.20 16 15 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 16 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 20 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 24 C 0.08 0.66 6.00 -3.75 -0.02 0.64 16 25 C 0.08 0.61 3.92 -26.79 -0.11 0.50 16 26 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 27 C -0.18 -1.51 8.80 37.16 0.33 -1.18 16 28 O -0.36 -3.61 10.20 -39.66 -0.40 -4.02 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.15 1.60 4.49 -53.96 -0.24 1.36 16 36 H 0.41 5.17 7.96 -40.82 -0.33 4.84 16 37 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 42 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.11 0.93 7.05 -51.93 -0.37 0.56 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.58 6.12 -51.93 -0.32 0.26 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -32.66 386.30 -6.82 -39.48 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.85 Total: 1.49 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 0.54 Total: 2.32 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.00 Total: -42.82 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.67 Total: -22.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.66 -6.82 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343145708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.034 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds