Wall clock time and date at job start Tue Mar 31 2020 07:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99700 * 2 1 4 4 C 1.52999 * 109.46571 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.51625 * 54.90002 * 4 3 2 6 6 C 1.53298 * 109.51251 * 174.99878 * 4 3 2 7 7 N 1.47149 * 108.38397 * 172.27304 * 6 4 3 8 8 C 1.34783 * 120.98024 * 129.44495 * 7 6 4 9 9 O 1.21340 * 120.00005 * 187.88383 * 8 7 6 10 10 C 1.49455 * 119.99769 * 7.88460 * 8 7 6 11 11 O 1.21352 * 119.99911 * 6.68506 * 10 8 7 12 12 N 1.34769 * 119.99721 * 186.67853 * 10 8 7 13 13 C 1.46505 * 120.00041 * 180.27500 * 12 10 8 14 14 C 1.52995 * 109.47562 * 179.72946 * 13 12 10 15 15 C 1.53001 * 109.47368 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47005 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99923 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00278 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99783 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47049 * 90.00414 * 20 18 16 22 22 H 1.48504 * 109.47006 * 209.99913 * 20 18 16 23 23 H 1.48500 * 109.47434 * 330.00208 * 20 18 16 24 24 C 1.47150 * 118.03894 * 309.71508 * 7 6 4 25 25 C 1.52875 * 108.60728 * 50.23025 * 24 7 6 26 26 H 1.09001 * 109.58802 * 187.92277 * 25 24 7 27 27 C 1.53005 * 109.41152 * 67.83702 * 25 24 7 28 28 O 1.42968 * 109.55378 * 294.77008 * 4 3 2 29 29 H 1.09000 * 109.47414 * 59.99841 * 1 2 3 30 30 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46678 * 300.00052 * 1 2 3 32 32 H 1.08998 * 109.47143 * 60.00543 * 3 2 1 33 33 H 1.08997 * 109.47132 * 300.00253 * 3 2 1 34 34 H 1.09004 * 109.67974 * 52.55576 * 6 4 3 35 35 H 1.08996 * 109.71566 * 292.01910 * 6 4 3 36 36 H 0.96994 * 120.00604 * 0.02562 * 12 10 8 37 37 H 1.09008 * 109.46907 * 299.73045 * 13 12 10 38 38 H 1.09000 * 109.47223 * 59.72620 * 13 12 10 39 39 H 1.09008 * 109.47090 * 299.99986 * 14 13 12 40 40 H 1.09000 * 109.47117 * 59.99609 * 14 13 12 41 41 H 1.09001 * 109.46912 * 299.99502 * 15 14 13 42 42 H 1.08997 * 109.47023 * 59.99610 * 15 14 13 43 43 H 0.96999 * 120.00015 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.68279 * 170.00953 * 24 7 6 45 45 H 1.09000 * 109.68175 * 290.56426 * 24 7 6 46 46 H 1.08996 * 109.47105 * 300.23303 * 27 25 24 47 47 H 1.08999 * 109.46310 * 60.22947 * 27 25 24 48 48 H 1.08994 * 109.47121 * 180.22682 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5671 -0.8414 6 6 4.1595 2.5791 -0.1266 7 7 5.6136 2.4556 0.0620 8 6 6.4762 2.9961 -0.8214 9 8 7.6637 2.7642 -0.7295 10 6 5.9700 3.8813 -1.9141 11 8 4.8025 4.2115 -1.9356 12 7 6.8102 4.3127 -2.8755 13 6 6.3155 5.1852 -3.9433 14 6 7.4643 5.5317 -4.8924 15 6 6.9477 6.4435 -6.0071 16 6 8.0793 6.7842 -6.9423 17 1 9.0681 6.3901 -6.7596 18 6 7.8524 7.5997 -8.0306 19 7 8.8399 7.8975 -8.8465 20 14 6.1422 8.2817 -8.3462 21 1 5.9934 9.5858 -7.6515 22 1 5.9473 8.4734 -9.8059 23 1 5.1263 7.3283 -7.8321 24 6 6.0982 1.7192 1.2402 25 6 5.3798 0.3712 1.3024 26 1 5.6201 -0.1279 2.2412 27 6 5.8325 -0.5009 0.1295 28 8 3.9683 0.5839 1.2223 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.7450 3.2372 0.6371 35 1 3.9509 2.9874 -1.1155 36 1 7.7434 4.0485 -2.8585 37 1 5.5291 4.6719 -4.4968 38 1 5.9150 6.1009 -3.5080 39 1 8.2507 6.0450 -4.3388 40 1 7.8647 4.6161 -5.3276 41 1 6.1612 5.9306 -6.5608 42 1 6.5476 7.3590 -5.5715 43 1 8.6802 8.4710 -9.6123 44 1 7.1729 1.5576 1.1557 45 1 5.8821 2.2892 2.1438 46 1 5.5936 -0.0003 -0.8088 47 1 6.9086 -0.6626 0.1913 48 1 5.3178 -1.4608 0.1707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343145708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:57 Heat of formation + Delta-G solvation = -172.609578 kcal Electronic energy + Delta-G solvation = -28561.170618 eV Core-core repulsion = 24423.116493 eV Total energy + Delta-G solvation = -4138.054126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26797 -40.66424 -39.49020 -38.53953 -37.34128 -35.98028 -35.09651 -34.09028 -33.31470 -31.14583 -29.46714 -28.46335 -27.99629 -26.26060 -25.60932 -24.12886 -23.32029 -22.31122 -21.43848 -20.61382 -19.17428 -18.77319 -18.40082 -17.87245 -17.52212 -17.44202 -17.00375 -16.64421 -16.36298 -16.21545 -16.18902 -15.83863 -15.67381 -15.38628 -15.22203 -14.78331 -14.75987 -14.53572 -13.81938 -13.78748 -13.73580 -13.45120 -13.31114 -12.95699 -12.76927 -12.70392 -12.57908 -12.44198 -12.40272 -12.12691 -11.91138 -11.79058 -11.65281 -11.58484 -11.33186 -11.20201 -10.75247 -10.64331 -10.48422 -10.25174 -9.78038 -8.28069 -6.32677 0.19909 1.09744 1.39007 1.40595 1.52271 1.96183 2.22660 2.37833 2.56918 2.79720 3.07740 3.17883 3.61516 3.80365 3.86301 3.94379 4.00943 4.08647 4.17495 4.19746 4.29492 4.35861 4.46607 4.47230 4.49402 4.58137 4.59087 4.61592 4.76004 4.79250 4.86520 4.87537 4.88744 4.89805 5.01589 5.05709 5.17163 5.27135 5.46832 5.55678 5.65426 5.77240 6.06621 6.09714 6.21369 6.28230 6.53959 6.75846 6.80640 7.32098 8.88501 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.002299 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.253806 B =12177.741449 C =13431.376752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.071 3.929 4 C 0.078 3.922 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.580 5.580 8 C 0.513 3.487 9 O -0.536 6.536 10 C 0.504 3.496 11 O -0.529 6.529 12 N -0.685 5.685 13 C 0.124 3.876 14 C -0.105 4.105 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.033 0.967 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.242 1.242 24 C 0.075 3.925 25 C 0.076 3.924 26 H 0.142 0.858 27 C -0.180 4.180 28 O -0.374 6.374 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.418 0.582 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.041 0.959 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.565 -16.652 24.416 33.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.082 0.918 6 C -0.068 4.068 7 N -0.313 5.313 8 C 0.296 3.704 9 O -0.413 6.413 10 C 0.286 3.714 11 O -0.408 6.408 12 N -0.337 5.337 13 C 0.002 3.998 14 C -0.143 4.143 15 C -0.048 4.048 16 C -0.571 4.571 17 H 0.052 0.948 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.165 1.165 24 C -0.046 4.046 25 C 0.018 3.982 26 H 0.160 0.840 27 C -0.237 4.237 28 O -0.293 6.293 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.718 -16.661 24.438 33.494 hybrid contribution 0.374 0.695 -0.857 1.165 sum -15.344 -15.966 23.581 32.348 Atomic orbital electron populations 1.22932 0.79298 1.03816 1.00988 1.87878 1.21515 1.27932 1.95646 1.22483 0.90208 0.85393 1.02506 1.22477 0.94106 0.92955 0.88501 0.91793 1.23299 0.77965 0.97205 1.08285 1.47916 1.07347 1.52218 1.23858 1.20049 0.86084 0.81274 0.83037 1.90757 1.16314 1.60607 1.73662 1.20152 0.86144 0.81977 0.83167 1.90516 1.16713 1.57644 1.75956 1.45937 1.14135 1.48482 1.25106 1.21585 0.97377 0.93721 0.87152 1.21527 0.96919 1.00070 0.95829 1.19456 0.95776 0.95710 0.93886 1.21483 0.96334 1.29621 1.09633 0.94829 1.26054 1.01545 0.96398 0.95571 1.70073 1.34358 1.38604 1.16281 0.85643 0.80007 0.79660 0.77246 1.19238 1.21329 1.16483 1.22602 1.01440 0.93379 0.87197 1.22675 0.80434 0.93645 1.01402 0.84036 1.22351 1.02800 1.00425 0.98143 1.88064 1.22673 1.81385 1.37221 0.93024 0.88710 0.93027 0.91199 0.90012 0.89001 0.84414 0.74506 0.90519 0.90647 0.91951 0.91874 0.95541 0.95726 0.92559 0.87747 0.88447 0.93973 0.90412 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.54 10.67 -144.74 -1.54 -9.09 16 3 C 0.07 1.08 5.61 71.98 0.40 1.48 16 4 C 0.08 1.36 2.67 30.69 0.08 1.44 16 5 H 0.06 1.26 6.25 -2.39 -0.01 1.25 16 6 C 0.05 0.96 5.43 86.36 0.47 1.43 16 7 N -0.58 -11.38 2.55 -819.74 -2.09 -13.47 16 8 C 0.51 12.37 7.75 87.27 0.68 13.04 16 9 O -0.54 -14.79 15.97 -3.22 -0.05 -14.84 16 10 C 0.50 12.94 7.74 87.27 0.68 13.62 16 11 O -0.53 -14.44 13.21 -3.25 -0.04 -14.48 16 12 N -0.69 -17.59 5.55 -464.40 -2.58 -20.17 16 13 C 0.12 3.52 5.67 86.38 0.49 4.01 16 14 C -0.11 -3.66 5.27 30.59 0.16 -3.50 16 15 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 16 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 17 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 18 C 0.00 0.05 5.47 84.65 0.46 0.52 16 19 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 20 Si 0.95 43.23 27.47 68.60 1.88 45.12 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 24 C 0.08 1.15 6.00 86.21 0.52 1.66 16 25 C 0.08 1.07 3.92 30.55 0.12 1.19 16 26 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 27 C -0.18 -2.76 8.80 71.98 0.63 -2.13 16 28 O -0.37 -6.80 10.20 -144.74 -1.48 -8.27 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.14 2.81 4.49 -34.55 -0.16 2.65 16 36 H 0.42 10.08 7.96 -92.71 -0.74 9.34 16 37 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.03 1.12 7.20 -2.39 -0.02 1.11 16 42 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.10 1.67 7.05 -2.39 -0.02 1.65 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.04 0.80 6.12 -2.39 -0.01 0.78 16 47 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.45 386.30 0.74 -69.72 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.02 Total: 20.13 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.31 Total: 4.38 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -4.36 Total: -92.66 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -3.12 Total: -46.69 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.12 kcal Total: -70.45 0.74 -69.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343145708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.893 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds