Wall clock time and date at job start Tue Mar 31 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48500 * 109.47294 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47335 * 120.00650 * 3 2 1 6 6 H 1.48502 * 109.47227 * 240.00725 * 3 2 1 7 7 C 1.38809 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00136 * 208.44672 * 7 2 1 9 9 N 1.36939 * 120.00347 * 28.44314 * 7 2 1 10 10 C 1.47022 * 125.65306 * 199.72503 * 9 7 2 11 11 C 1.54321 * 107.27135 * 181.02049 * 10 9 7 12 12 H 1.09005 * 110.71906 * 140.73569 * 11 10 9 13 13 N 1.46501 * 110.71770 * 263.82478 * 11 10 9 14 14 C 1.34778 * 120.00004 * 273.54490 * 13 11 10 15 15 O 1.21280 * 120.00269 * 0.02562 * 14 13 11 16 16 C 1.50698 * 119.99839 * 179.97438 * 14 13 11 17 17 C 1.53009 * 109.47069 * 180.02562 * 16 14 13 18 18 O 1.42899 * 109.46857 * 180.02562 * 17 16 14 19 19 C 1.42904 * 113.99628 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.47089 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.82052 * 305.70552 * 20 19 18 22 22 C 1.54382 * 109.83143 * 184.82040 * 20 19 18 23 23 C 1.55453 * 102.18356 * 219.18350 * 22 20 19 24 24 C 1.54942 * 100.99034 * 34.03372 * 23 22 20 25 25 O 1.43232 * 109.83111 * 66.59112 * 20 19 18 26 26 C 1.55148 * 102.94636 * 22.19017 * 11 10 9 27 27 H 1.08998 * 111.00591 * 82.60711 * 26 11 10 28 28 O 1.42898 * 111.00947 * 206.42629 * 26 11 10 29 29 C 1.47426 * 125.64656 * 19.40725 * 9 7 2 30 30 H 0.96998 * 120.00170 * 185.65407 * 1 2 3 31 31 H 1.09002 * 109.87831 * 300.43634 * 10 9 7 32 32 H 1.08997 * 109.88402 * 61.44379 * 10 9 7 33 33 H 0.96993 * 119.99981 * 93.55272 * 13 11 10 34 34 H 1.09000 * 109.47777 * 300.00264 * 16 14 13 35 35 H 1.09000 * 109.47277 * 60.00374 * 16 14 13 36 36 H 1.08994 * 109.47051 * 300.00247 * 17 16 14 37 37 H 1.08994 * 109.46701 * 60.00055 * 17 16 14 38 38 H 1.08993 * 109.47406 * 300.00344 * 19 18 17 39 39 H 1.09007 * 109.46627 * 60.00836 * 19 18 17 40 40 H 1.09001 * 110.84586 * 337.32040 * 22 20 19 41 41 H 1.08996 * 110.84971 * 100.93732 * 22 20 19 42 42 H 1.09006 * 111.05712 * 276.11698 * 23 22 20 43 43 H 1.08998 * 111.18223 * 152.01264 * 23 22 20 44 44 H 1.08998 * 110.31195 * 204.68801 * 24 23 22 45 45 H 1.09006 * 110.39081 * 82.56796 * 24 23 22 46 46 H 0.96697 * 114.00436 * 180.02562 * 28 26 11 47 47 H 1.09003 * 110.37279 * 274.75383 * 29 9 7 48 48 H 1.09002 * 110.36673 * 37.07362 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1042 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 2.9924 -1.2588 0.4450 9 7 1.4496 -2.3163 -0.5659 10 6 1.8475 -3.7059 -0.2976 11 6 0.9605 -4.6141 -1.1750 12 1 1.5393 -5.4448 -1.5787 13 7 -0.1893 -5.1079 -0.4131 14 6 -0.0753 -6.2270 0.3294 15 8 0.9792 -6.8250 0.3671 16 6 -1.2578 -6.7346 1.1136 17 6 -0.8634 -8.0086 1.8636 18 8 -1.9849 -8.4902 2.6068 19 6 -1.7221 -9.6838 3.3474 20 6 -2.9858 -10.1060 4.0995 21 1 -3.3462 -9.2783 4.7104 22 6 -2.6788 -11.3242 4.9968 23 6 -3.9644 -12.1831 4.8349 24 6 -4.3390 -11.8796 3.3624 25 8 -3.9988 -10.4980 3.1659 26 6 0.4992 -3.6596 -2.3079 27 1 1.2584 -3.5813 -3.0860 28 8 -0.7509 -4.0820 -2.8564 29 6 0.3425 -2.3212 -1.5394 30 1 -0.4850 -0.8359 0.0828 31 1 2.8962 -3.8481 -0.5586 32 1 1.6930 -3.9390 0.7559 33 1 -1.0325 -4.6296 -0.4430 34 1 -1.5726 -5.9749 1.8290 35 1 -2.0792 -6.9538 0.4314 36 1 -0.5484 -8.7684 1.1486 37 1 -0.0422 -7.7890 2.5458 38 1 -1.4247 -10.4781 2.6628 39 1 -0.9188 -9.4992 4.0608 40 1 -1.8041 -11.8633 4.6330 41 1 -2.5433 -11.0178 6.0340 42 1 -4.7470 -11.8489 5.5162 43 1 -3.7506 -13.2426 4.9757 44 1 -5.4065 -12.0327 3.2043 45 1 -3.7627 -12.5111 2.6861 46 1 -1.0794 -3.5161 -3.5683 47 1 -0.6169 -2.2875 -1.0231 48 1 0.4355 -1.4780 -2.2239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219930816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:51 Heat of formation + Delta-G solvation = -156.588498 kcal Electronic energy + Delta-G solvation = -28098.190215 eV Core-core repulsion = 23960.830816 eV Total energy + Delta-G solvation = -4137.359400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.96526 -39.77251 -38.19932 -37.48491 -35.31630 -33.89538 -32.64667 -32.26760 -31.61152 -30.30556 -28.32010 -27.38311 -25.76055 -24.36853 -23.53777 -22.13323 -21.49740 -20.62003 -20.44106 -19.83530 -17.69464 -17.54985 -17.34075 -16.91686 -16.45874 -16.17991 -15.88360 -15.71992 -15.17239 -14.81037 -14.69522 -14.09986 -13.92530 -13.71484 -13.65340 -13.55751 -13.00377 -12.87570 -12.80972 -12.56305 -12.36838 -12.16665 -11.74237 -11.66195 -11.62021 -11.38371 -11.30697 -11.27583 -11.21591 -10.80035 -10.63535 -10.42954 -10.05878 -9.82741 -9.81458 -9.71651 -9.66112 -9.41780 -8.70792 -8.45347 -7.01351 -6.16935 -3.23680 2.85690 3.04362 3.46214 3.47562 3.50343 3.68614 3.78643 4.03123 4.28864 4.39744 4.52014 4.56981 4.73902 4.80508 4.86313 4.93509 5.01650 5.05705 5.12321 5.18946 5.24453 5.25941 5.26695 5.31605 5.34857 5.40290 5.51250 5.52810 5.54845 5.59392 5.73306 5.78384 5.83080 5.96784 6.00550 6.37378 6.58000 6.66523 6.69731 6.82048 6.93580 7.07056 7.71389 7.80820 7.84954 8.41746 8.46925 8.93725 9.73560 10.27146 11.14973 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002012 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.854810 B =13915.167987 C =14440.060410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.024 4.024 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.338 4.338 8 H 0.066 0.934 9 N -0.597 5.597 10 C 0.125 3.875 11 C 0.146 3.854 12 H 0.093 0.907 13 N -0.698 5.698 14 C 0.519 3.481 15 O -0.554 6.554 16 C -0.139 4.139 17 C 0.080 3.920 18 O -0.382 6.382 19 C 0.055 3.945 20 C 0.082 3.918 21 H 0.090 0.910 22 C -0.150 4.150 23 C -0.156 4.156 24 C 0.046 3.954 25 O -0.367 6.367 26 C 0.074 3.926 27 H 0.076 0.924 28 O -0.562 6.562 29 C 0.118 3.882 30 H 0.268 0.732 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.407 0.593 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.379 0.621 47 H 0.035 0.965 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 -21.994 4.631 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.227 4.227 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.326 5.326 10 C -0.002 4.002 11 C 0.040 3.960 12 H 0.111 0.889 13 N -0.349 5.349 14 C 0.305 3.695 15 O -0.432 6.432 16 C -0.179 4.179 17 C 0.003 3.997 18 O -0.301 6.301 19 C -0.022 4.022 20 C 0.025 3.975 21 H 0.107 0.893 22 C -0.187 4.187 23 C -0.194 4.194 24 C -0.031 4.031 25 O -0.286 6.286 26 C 0.013 3.987 27 H 0.094 0.906 28 O -0.367 6.367 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.242 0.758 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.226 0.774 47 H 0.053 0.947 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.988 -20.920 4.915 22.597 hybrid contribution 0.169 -1.193 -0.110 1.209 sum -6.819 -22.113 4.805 23.634 Atomic orbital electron populations 1.70806 1.06643 1.30080 1.47731 1.25820 0.96418 1.01233 0.99190 0.83512 0.74819 0.75900 0.76269 1.21072 1.21924 1.22051 1.19726 0.99813 0.87954 1.39113 0.91658 1.44397 1.40429 1.00531 1.47220 1.21804 0.96054 0.85343 0.96975 1.21979 0.87491 0.95800 0.90727 0.88877 1.45663 1.15323 1.26538 1.47358 1.20299 0.89381 0.80372 0.79418 1.90677 1.29931 1.58095 1.64532 1.21437 0.97762 0.98400 1.00256 1.22103 0.88087 0.94917 0.94557 1.87863 1.36316 1.41856 1.64065 1.22895 0.96703 0.87683 0.94950 1.22779 0.87950 0.97166 0.89650 0.89263 1.23145 0.98900 0.95780 1.00893 1.23296 0.97630 1.00940 0.97496 1.23417 1.00927 0.83589 0.95167 1.88562 1.56910 1.25696 1.57452 1.23479 0.85711 0.95296 0.94193 0.90615 1.86383 1.38207 1.55913 1.56174 1.22202 0.92747 0.94097 0.91762 0.92121 0.94453 0.94808 0.75834 0.87996 0.88029 0.92560 0.92468 0.92919 0.92242 0.90154 0.89458 0.90164 0.89771 0.89649 0.92269 0.77359 0.94693 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.02 13.01 55.49 0.72 -26.29 16 2 C -0.02 -0.69 5.10 -17.43 -0.09 -0.78 16 3 Si 1.07 25.07 30.00 -169.99 -5.10 19.97 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.34 -9.51 10.00 -15.06 -0.15 -9.66 16 8 H 0.07 1.85 7.97 -52.49 -0.42 1.43 16 9 N -0.60 -14.93 3.26 -169.93 -0.55 -15.48 16 10 C 0.12 2.72 6.98 -3.07 -0.02 2.70 16 11 C 0.15 2.67 3.14 -66.10 -0.21 2.46 16 12 H 0.09 1.68 7.69 -51.93 -0.40 1.28 16 13 N -0.70 -11.80 4.78 -52.04 -0.25 -12.05 16 14 C 0.52 8.60 7.83 -10.99 -0.09 8.52 16 15 O -0.55 -10.74 15.71 5.56 0.09 -10.66 16 16 C -0.14 -1.84 6.07 -27.88 -0.17 -2.01 16 17 C 0.08 1.06 5.23 37.16 0.19 1.25 16 18 O -0.38 -5.03 10.33 -37.67 -0.39 -5.42 16 19 C 0.05 0.56 5.47 37.16 0.20 0.76 16 20 C 0.08 0.76 3.81 -26.01 -0.10 0.66 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 C -0.15 -0.89 6.56 -24.70 -0.16 -1.05 16 23 C -0.16 -0.83 7.16 -24.40 -0.17 -1.01 16 24 C 0.05 0.33 7.78 38.18 0.30 0.63 16 25 O -0.37 -4.11 11.00 -37.67 -0.41 -4.52 16 26 C 0.07 1.28 4.23 -24.47 -0.10 1.17 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 O -0.56 -8.37 12.63 -35.23 -0.44 -8.81 16 29 C 0.12 2.59 5.10 -2.41 -0.01 2.58 16 30 H 0.27 7.93 6.19 -40.82 -0.25 7.68 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.41 6.53 8.20 -40.82 -0.33 6.19 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.32 16 37 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.42 7.85 -51.93 -0.41 0.02 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.38 4.13 9.12 45.56 0.42 4.55 16 47 H 0.04 0.82 6.81 -51.93 -0.35 0.47 16 48 H 0.05 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -34.78 390.32 -8.34 -43.12 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.30 Total: 8.04 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.58 Total: 6.23 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.08 Total: -53.83 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.16 Total: -29.41 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.78 -8.34 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219930816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.472 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds