Wall clock time and date at job start Tue Mar 31 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48497 * 109.47083 * 270.00515 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00503 * 3 2 1 6 6 H 1.48503 * 109.47130 * 150.00326 * 3 2 1 7 7 C 1.38810 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00446 * 159.89287 * 7 2 1 9 9 N 1.36938 * 119.99643 * 339.89195 * 7 2 1 10 10 C 1.46506 * 120.00181 * 321.90076 * 9 7 2 11 11 C 1.53002 * 109.47170 * 264.45064 * 10 9 7 12 12 O 1.42897 * 109.47121 * 65.00071 * 11 10 9 13 13 C 1.46503 * 120.00188 * 141.90800 * 9 7 2 14 14 H 1.08996 * 109.52658 * 179.97438 * 13 9 7 15 15 C 1.53046 * 109.49109 * 299.99854 * 13 9 7 16 16 C 1.53044 * 109.52165 * 181.31127 * 15 13 9 17 17 C 1.53192 * 109.31147 * 298.63940 * 16 15 13 18 18 N 1.46926 * 108.77715 * 54.63733 * 17 16 15 19 19 C 1.34768 * 120.62916 * 126.37155 * 18 17 16 20 20 O 1.21287 * 120.00388 * 355.44214 * 19 18 17 21 21 C 1.50701 * 119.99833 * 175.44730 * 19 18 17 22 22 H 1.08998 * 109.52477 * 51.86638 * 21 19 18 23 23 C 1.53147 * 109.52276 * 291.73420 * 21 19 18 24 24 O 1.43079 * 109.15044 * 184.78370 * 23 21 19 25 25 C 1.43074 * 113.58871 * 57.95387 * 24 23 21 26 26 C 1.53138 * 109.15588 * 302.04718 * 25 24 23 27 27 O 1.43081 * 109.52287 * 172.00021 * 21 19 18 28 28 C 1.46920 * 118.73653 * 306.39057 * 18 17 16 29 29 H 0.97007 * 120.00036 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46702 * 24.44772 * 10 9 7 31 31 H 1.08994 * 109.46732 * 144.44741 * 10 9 7 32 32 H 1.09000 * 109.46968 * 184.99631 * 11 10 9 33 33 H 1.08990 * 109.46890 * 304.99894 * 11 10 9 34 34 H 0.96700 * 113.99871 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.46422 * 61.29830 * 15 13 9 36 36 H 1.09003 * 109.46125 * 301.31994 * 15 13 9 37 37 H 1.08994 * 109.50146 * 58.58961 * 16 15 13 38 38 H 1.09003 * 109.49655 * 178.65736 * 16 15 13 39 39 H 1.08995 * 109.58709 * 174.42774 * 17 16 15 40 40 H 1.09006 * 109.58766 * 294.70456 * 17 16 15 41 41 H 1.08990 * 109.52515 * 304.69211 * 23 21 19 42 42 H 1.09005 * 109.52119 * 64.88778 * 23 21 19 43 43 H 1.08998 * 109.52382 * 61.95467 * 25 24 23 44 44 H 1.09007 * 109.52594 * 182.07846 * 25 24 23 45 45 H 1.08996 * 109.52612 * 175.21439 * 26 25 24 46 46 H 1.08998 * 109.52418 * 295.34487 * 26 25 24 47 47 H 1.09005 * 109.58730 * 173.39458 * 28 18 17 48 48 H 1.09008 * 109.59114 * 293.67930 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0409 -1.2305 -0.3221 9 7 1.3882 -2.3520 0.4067 10 6 0.4501 -2.3186 1.5315 11 6 1.1822 -2.7067 2.8178 12 8 2.1701 -1.7195 3.1200 13 6 1.6607 -3.6158 -0.2824 14 1 1.0796 -4.4147 0.1783 15 6 1.2716 -3.4877 -1.7570 16 6 1.5255 -4.8177 -2.4704 17 6 3.0169 -5.1584 -2.3914 18 7 3.4321 -5.1407 -0.9821 19 6 4.0563 -6.2034 -0.4368 20 8 4.2066 -7.2171 -1.0855 21 6 4.5673 -6.1322 0.9791 22 1 3.7668 -5.7980 1.6390 23 6 5.7363 -5.1455 1.0523 24 8 6.2868 -5.1671 2.3727 25 6 6.7383 -6.4610 2.7837 26 6 5.5695 -7.4477 2.7105 27 8 5.0175 -7.4265 1.3906 28 6 3.1535 -3.9426 -0.1786 29 1 -0.4850 0.8401 0.0004 30 1 0.0424 -1.3129 1.6348 31 1 -0.3615 -3.0227 1.3488 32 1 0.4672 -2.7682 3.6383 33 1 1.6649 -3.6745 2.6831 34 1 2.6747 -1.9014 3.9246 35 1 1.8699 -2.7053 -2.2238 36 1 0.2150 -3.2309 -1.8328 37 1 0.9464 -5.6054 -1.9884 38 1 1.2259 -4.7332 -3.5150 39 1 3.1879 -6.1500 -2.8103 40 1 3.5905 -4.4207 -2.9528 41 1 6.5027 -5.4347 0.3333 42 1 5.3802 -4.1412 0.8225 43 1 7.5385 -6.7945 2.1230 44 1 7.1091 -6.4093 3.8075 45 1 5.9255 -8.4519 2.9404 46 1 4.8035 -7.1592 3.4304 47 1 3.4145 -4.1321 0.8626 48 1 3.7402 -3.1050 -0.5558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692034929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:32 Heat of formation + Delta-G solvation = -138.103372 kcal Electronic energy + Delta-G solvation = -30988.874454 eV Core-core repulsion = 26852.316629 eV Total energy + Delta-G solvation = -4136.557824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69924 -39.24330 -37.53958 -36.28504 -35.97900 -34.53862 -32.95335 -31.68712 -31.11536 -29.66190 -28.28342 -27.27921 -25.66241 -24.43104 -24.16108 -22.38485 -21.84999 -20.78477 -19.85655 -18.98226 -17.48770 -16.94290 -16.79409 -16.63902 -16.35992 -16.12961 -15.56743 -15.35645 -14.93262 -14.51024 -14.40897 -14.29442 -13.89562 -13.69502 -13.53295 -13.32471 -12.97783 -12.81818 -12.60531 -12.45472 -12.32833 -12.02006 -11.77622 -11.36164 -11.06008 -11.04685 -10.95629 -10.80819 -10.74664 -10.67350 -10.36883 -10.21923 -9.98918 -9.90729 -9.70717 -9.49615 -9.32644 -9.16619 -8.54799 -8.30544 -6.58099 -5.78444 -3.34415 2.61192 2.77568 3.39115 3.47222 3.51675 3.52440 3.76314 4.35410 4.44957 4.56524 4.72328 4.80561 4.89793 4.96666 5.14107 5.22000 5.23965 5.29141 5.36332 5.37131 5.43658 5.51771 5.53052 5.60971 5.68951 5.73139 5.94876 5.99613 6.04917 6.11310 6.22264 6.33642 6.38333 6.48060 6.57484 6.68089 6.74171 6.75541 6.85037 6.96135 7.16997 7.55021 7.60557 7.82673 8.26006 8.40255 8.56973 9.17046 9.80707 10.35922 11.24748 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004652 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.015366 B = 6017.881468 C = 7052.762470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.020 3.980 3 Si 0.896 3.104 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.057 0.943 9 N -0.567 5.567 10 C 0.146 3.854 11 C 0.059 3.941 12 O -0.543 6.543 13 C 0.165 3.835 14 H 0.050 0.950 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.115 3.885 18 N -0.600 5.600 19 C 0.524 3.476 20 O -0.532 6.532 21 C 0.040 3.960 22 H 0.094 0.906 23 C 0.036 3.964 24 O -0.370 6.370 25 C 0.020 3.980 26 C 0.023 3.977 27 O -0.353 6.353 28 C 0.089 3.911 29 H 0.253 0.747 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.351 0.649 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.588 -11.160 4.345 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.726 3.274 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.074 0.926 9 N -0.287 5.287 10 C 0.020 3.980 11 C -0.021 4.021 12 O -0.345 6.345 13 C 0.057 3.943 14 H 0.068 0.932 15 C -0.160 4.160 16 C -0.172 4.172 17 C -0.007 4.007 18 N -0.335 5.335 19 C 0.310 3.690 20 O -0.408 6.408 21 C -0.022 4.022 22 H 0.112 0.888 23 C -0.041 4.041 24 O -0.288 6.288 25 C -0.057 4.057 26 C -0.054 4.054 27 O -0.271 6.271 28 C -0.035 4.035 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.193 0.807 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.285 -11.272 3.435 13.854 hybrid contribution 0.550 0.642 0.763 1.139 sum 7.835 -10.630 4.198 13.857 Atomic orbital electron populations 1.69974 1.05579 1.25621 1.52230 1.25064 0.94897 0.98523 0.99457 0.86422 0.79760 0.83881 0.77318 1.21689 1.21742 1.20277 1.18709 0.93010 0.84966 1.40506 0.92582 1.43655 1.50697 1.02898 1.31431 1.21007 0.90021 1.03527 0.83446 1.23084 0.90144 0.90024 0.98889 1.86843 1.52430 1.48985 1.46205 1.20604 0.91480 0.89818 0.92438 0.93215 1.21911 1.02413 0.94999 0.96656 1.21970 0.94961 0.99281 1.00967 1.21614 0.95664 1.02583 0.80847 1.48172 1.57085 1.16035 1.12210 1.19794 0.78549 0.83304 0.87363 1.90678 1.57326 1.30090 1.62728 1.22565 0.97894 0.86051 0.95675 0.88840 1.23248 0.94614 1.00987 0.85249 1.88165 1.80227 1.28913 1.31490 1.23300 0.96290 0.84265 1.01856 1.23323 0.95909 1.01251 0.84903 1.88205 1.80439 1.26922 1.31507 1.22666 1.00819 0.85678 0.94327 0.93723 0.87910 0.94517 0.96132 0.96258 0.80652 0.91156 0.91711 0.92283 0.91298 0.89628 0.91365 0.91620 0.86293 0.91993 0.87544 0.87373 0.91887 0.90654 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 11.51 55.49 0.64 -23.80 16 2 C 0.02 0.54 4.93 -17.43 -0.09 0.45 16 3 Si 0.90 21.27 29.60 -169.99 -5.03 16.24 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.01 8.01 -15.06 -0.12 -6.14 16 8 H 0.06 1.40 6.75 -52.49 -0.35 1.05 16 9 N -0.57 -12.52 2.32 -165.53 -0.38 -12.90 16 10 C 0.15 3.18 5.56 -4.04 -0.02 3.16 16 11 C 0.06 1.08 7.39 37.16 0.27 1.35 16 12 O -0.54 -10.58 13.40 -35.23 -0.47 -11.05 16 13 C 0.17 3.07 2.78 -67.82 -0.19 2.88 16 14 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 15 C -0.12 -2.17 5.11 -26.68 -0.14 -2.30 16 16 C -0.13 -1.94 6.08 -26.61 -0.16 -2.10 16 17 C 0.11 1.67 6.44 -3.71 -0.02 1.65 16 18 N -0.60 -9.33 2.97 -172.78 -0.51 -9.85 16 19 C 0.52 8.64 7.06 -10.99 -0.08 8.56 16 20 O -0.53 -10.38 15.94 -14.18 -0.23 -10.60 16 21 C 0.04 0.57 2.40 -27.81 -0.07 0.50 16 22 H 0.09 1.30 7.05 -51.93 -0.37 0.94 16 23 C 0.04 0.48 6.01 37.23 0.22 0.70 16 24 O -0.37 -4.78 10.85 -48.75 -0.53 -5.31 16 25 C 0.02 0.19 7.05 37.23 0.26 0.46 16 26 C 0.02 0.24 7.05 37.23 0.26 0.50 16 27 O -0.35 -5.16 10.04 -62.45 -0.63 -5.79 16 28 C 0.09 1.46 4.44 -3.73 -0.02 1.44 16 29 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.10 2.62 5.59 -51.93 -0.29 2.33 16 31 H 0.04 0.75 8.04 -51.93 -0.42 0.34 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.35 4.96 9.12 45.56 0.42 5.38 16 35 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.12 1.58 6.16 -51.93 -0.32 1.26 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 1.20 4.98 -51.93 -0.26 0.94 16 48 H 0.08 1.41 6.80 -51.92 -0.35 1.06 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -31.56 373.18 -8.30 -39.86 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.90 Total: 6.48 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 0.12 Total: 11.11 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.26 Total: -46.55 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.85 Total: -32.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.56 -8.30 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692034929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.246 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds