Wall clock time and date at job start Tue Mar 31 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48497 * 109.47083 * 270.00515 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00503 * 3 2 1 6 6 H 1.48503 * 109.47130 * 150.00326 * 3 2 1 7 7 C 1.38810 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00446 * 159.89287 * 7 2 1 9 9 N 1.36938 * 119.99643 * 339.89195 * 7 2 1 10 10 C 1.46506 * 120.00181 * 321.90076 * 9 7 2 11 11 C 1.53002 * 109.47170 * 264.45064 * 10 9 7 12 12 O 1.42897 * 109.47121 * 65.00071 * 11 10 9 13 13 C 1.46503 * 120.00188 * 141.90800 * 9 7 2 14 14 H 1.08996 * 109.52658 * 179.97438 * 13 9 7 15 15 C 1.53046 * 109.49109 * 299.99854 * 13 9 7 16 16 C 1.53044 * 109.52165 * 181.31127 * 15 13 9 17 17 C 1.53192 * 109.31147 * 298.63940 * 16 15 13 18 18 N 1.46926 * 108.77715 * 54.63733 * 17 16 15 19 19 C 1.34768 * 120.62916 * 126.37155 * 18 17 16 20 20 O 1.21287 * 120.00388 * 355.44214 * 19 18 17 21 21 C 1.50701 * 119.99833 * 175.44730 * 19 18 17 22 22 H 1.08998 * 109.52477 * 51.86638 * 21 19 18 23 23 C 1.53147 * 109.52276 * 291.73420 * 21 19 18 24 24 O 1.43079 * 109.15044 * 184.78370 * 23 21 19 25 25 C 1.43074 * 113.58871 * 57.95387 * 24 23 21 26 26 C 1.53138 * 109.15588 * 302.04718 * 25 24 23 27 27 O 1.43081 * 109.52287 * 172.00021 * 21 19 18 28 28 C 1.46920 * 118.73653 * 306.39057 * 18 17 16 29 29 H 0.97007 * 120.00036 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46702 * 24.44772 * 10 9 7 31 31 H 1.08994 * 109.46732 * 144.44741 * 10 9 7 32 32 H 1.09000 * 109.46968 * 184.99631 * 11 10 9 33 33 H 1.08990 * 109.46890 * 304.99894 * 11 10 9 34 34 H 0.96700 * 113.99871 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.46422 * 61.29830 * 15 13 9 36 36 H 1.09003 * 109.46125 * 301.31994 * 15 13 9 37 37 H 1.08994 * 109.50146 * 58.58961 * 16 15 13 38 38 H 1.09003 * 109.49655 * 178.65736 * 16 15 13 39 39 H 1.08995 * 109.58709 * 174.42774 * 17 16 15 40 40 H 1.09006 * 109.58766 * 294.70456 * 17 16 15 41 41 H 1.08990 * 109.52515 * 304.69211 * 23 21 19 42 42 H 1.09005 * 109.52119 * 64.88778 * 23 21 19 43 43 H 1.08998 * 109.52382 * 61.95467 * 25 24 23 44 44 H 1.09007 * 109.52594 * 182.07846 * 25 24 23 45 45 H 1.08996 * 109.52612 * 175.21439 * 26 25 24 46 46 H 1.08998 * 109.52418 * 295.34487 * 26 25 24 47 47 H 1.09005 * 109.58730 * 173.39458 * 28 18 17 48 48 H 1.09008 * 109.59114 * 293.67930 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0409 -1.2305 -0.3221 9 7 1.3882 -2.3520 0.4067 10 6 0.4501 -2.3186 1.5315 11 6 1.1822 -2.7067 2.8178 12 8 2.1701 -1.7195 3.1200 13 6 1.6607 -3.6158 -0.2824 14 1 1.0796 -4.4147 0.1783 15 6 1.2716 -3.4877 -1.7570 16 6 1.5255 -4.8177 -2.4704 17 6 3.0169 -5.1584 -2.3914 18 7 3.4321 -5.1407 -0.9821 19 6 4.0563 -6.2034 -0.4368 20 8 4.2066 -7.2171 -1.0855 21 6 4.5673 -6.1322 0.9791 22 1 3.7668 -5.7980 1.6390 23 6 5.7363 -5.1455 1.0523 24 8 6.2868 -5.1671 2.3727 25 6 6.7383 -6.4610 2.7837 26 6 5.5695 -7.4477 2.7105 27 8 5.0175 -7.4265 1.3906 28 6 3.1535 -3.9426 -0.1786 29 1 -0.4850 0.8401 0.0004 30 1 0.0424 -1.3129 1.6348 31 1 -0.3615 -3.0227 1.3488 32 1 0.4672 -2.7682 3.6383 33 1 1.6649 -3.6745 2.6831 34 1 2.6747 -1.9014 3.9246 35 1 1.8699 -2.7053 -2.2238 36 1 0.2150 -3.2309 -1.8328 37 1 0.9464 -5.6054 -1.9884 38 1 1.2259 -4.7332 -3.5150 39 1 3.1879 -6.1500 -2.8103 40 1 3.5905 -4.4207 -2.9528 41 1 6.5027 -5.4347 0.3333 42 1 5.3802 -4.1412 0.8225 43 1 7.5385 -6.7945 2.1230 44 1 7.1091 -6.4093 3.8075 45 1 5.9255 -8.4519 2.9404 46 1 4.8035 -7.1592 3.4304 47 1 3.4145 -4.1321 0.8626 48 1 3.7402 -3.1050 -0.5558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692034929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:30 Heat of formation + Delta-G solvation = -160.726094 kcal Electronic energy + Delta-G solvation = -30989.855449 eV Core-core repulsion = 26852.316629 eV Total energy + Delta-G solvation = -4137.538819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.188 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.85802 -40.37906 -39.00612 -37.67066 -37.05846 -36.12890 -34.22207 -33.36488 -32.30942 -31.13386 -29.31270 -28.92085 -26.83662 -25.93695 -25.51964 -23.69285 -22.98232 -22.14702 -21.43529 -20.26845 -18.67103 -18.39970 -18.10621 -17.80502 -17.74120 -17.09107 -16.79991 -16.59529 -16.42368 -16.04451 -15.77845 -15.46752 -15.38393 -15.23190 -14.64203 -14.55329 -14.41446 -14.11279 -13.99247 -13.84341 -13.61925 -13.20789 -13.05822 -12.78960 -12.74466 -12.62398 -12.50238 -12.32700 -11.97133 -11.92497 -11.79787 -11.62775 -11.53936 -11.51776 -11.30612 -10.80144 -10.62141 -10.38173 -10.31171 -9.74475 -8.41961 -7.72065 -5.29467 1.34085 1.48873 1.54000 1.60333 1.62580 2.57585 2.61331 2.72631 3.29660 3.40181 3.42359 3.65160 3.71572 3.84864 3.93972 3.94531 4.08704 4.09787 4.17046 4.20743 4.29242 4.41909 4.44471 4.45425 4.58032 4.61678 4.69080 4.75642 4.77153 4.79306 4.86036 4.93995 5.00012 5.03396 5.11689 5.16982 5.44800 5.45997 5.63879 5.78898 5.83188 5.85128 5.86132 6.27366 6.58071 6.97904 7.23260 7.30899 7.96258 8.47694 9.26858 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004652 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.015366 B = 6017.881468 C = 7052.762470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.029 4.029 3 Si 0.942 3.058 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.226 4.226 8 H 0.055 0.945 9 N -0.578 5.578 10 C 0.141 3.859 11 C 0.069 3.931 12 O -0.572 6.572 13 C 0.163 3.837 14 H 0.055 0.945 15 C -0.112 4.112 16 C -0.120 4.120 17 C 0.113 3.887 18 N -0.596 5.596 19 C 0.524 3.476 20 O -0.564 6.564 21 C 0.044 3.956 22 H 0.099 0.901 23 C 0.043 3.957 24 O -0.383 6.383 25 C 0.016 3.984 26 C 0.017 3.983 27 O -0.379 6.379 28 C 0.106 3.894 29 H 0.245 0.755 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.375 0.625 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -12.571 5.327 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.225 4.225 3 Si 0.773 3.227 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.356 4.356 8 H 0.072 0.928 9 N -0.298 5.298 10 C 0.015 3.985 11 C -0.011 4.011 12 O -0.377 6.377 13 C 0.055 3.945 14 H 0.074 0.926 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.009 4.009 18 N -0.330 5.330 19 C 0.311 3.689 20 O -0.443 6.443 21 C -0.017 4.017 22 H 0.117 0.883 23 C -0.034 4.034 24 O -0.302 6.302 25 C -0.061 4.061 26 C -0.059 4.059 27 O -0.297 6.297 28 C -0.017 4.017 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.221 0.779 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.751 -12.699 4.439 16.048 hybrid contribution 0.136 0.976 0.507 1.108 sum 8.887 -11.723 4.946 15.520 Atomic orbital electron populations 1.70094 1.06539 1.25301 1.54676 1.25570 0.95367 1.00695 1.00874 0.85683 0.78619 0.81434 0.77001 1.21594 1.22806 1.20115 1.18848 0.92826 0.85818 1.38128 0.92757 1.43769 1.50533 1.03275 1.32228 1.20941 0.90680 1.01568 0.85300 1.22842 0.90384 0.90210 0.97623 1.86761 1.53064 1.49816 1.48055 1.20729 0.92973 0.88397 0.92394 0.92636 1.21773 1.00364 0.96378 0.96668 1.21855 0.95147 0.97016 1.01808 1.21707 0.95580 1.03063 0.80510 1.48165 1.56760 1.15547 1.12487 1.20184 0.77920 0.82670 0.88105 1.90660 1.58637 1.31194 1.63775 1.22490 0.98424 0.86630 0.94149 0.88318 1.23118 0.94209 1.00340 0.85742 1.88144 1.80234 1.30804 1.31019 1.23553 0.96132 0.82833 1.03546 1.23624 0.96179 1.02948 0.83117 1.88172 1.80862 1.26919 1.33792 1.22353 0.98741 0.85644 0.95002 0.94596 0.91751 0.94061 0.93850 0.94426 0.77866 0.92996 0.94160 0.92121 0.89184 0.89405 0.90246 0.91736 0.86631 0.91673 0.84592 0.84867 0.91085 0.89661 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 11.51 21.65 0.25 -51.55 16 2 C -0.03 -1.52 4.93 84.86 0.42 -1.10 16 3 Si 0.94 44.21 29.60 68.60 2.03 46.24 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.23 -11.19 8.01 84.03 0.67 -10.52 16 8 H 0.05 2.69 6.75 -2.91 -0.02 2.68 16 9 N -0.58 -25.31 2.32 -677.63 -1.57 -26.89 16 10 C 0.14 6.10 5.56 86.38 0.48 6.58 16 11 C 0.07 2.39 7.39 71.98 0.53 2.92 16 12 O -0.57 -21.25 13.40 -148.98 -2.00 -23.24 16 13 C 0.16 5.90 2.78 45.06 0.13 6.02 16 14 H 0.06 1.96 7.87 -2.39 -0.02 1.94 16 15 C -0.11 -4.00 5.11 30.62 0.16 -3.84 16 16 C -0.12 -3.31 6.08 30.67 0.19 -3.12 16 17 C 0.11 3.10 6.44 86.36 0.56 3.66 16 18 N -0.60 -17.62 2.97 -818.96 -2.43 -20.05 16 19 C 0.52 16.51 7.06 87.66 0.62 17.13 16 20 O -0.56 -21.39 15.94 15.82 0.25 -21.14 16 21 C 0.04 1.20 2.40 29.90 0.07 1.27 16 22 H 0.10 2.53 7.05 -2.39 -0.02 2.51 16 23 C 0.04 1.07 6.01 72.03 0.43 1.50 16 24 O -0.38 -9.00 10.85 -136.05 -1.48 -10.48 16 25 C 0.02 0.26 7.05 72.03 0.51 0.77 16 26 C 0.02 0.31 7.05 72.03 0.51 0.81 16 27 O -0.38 -10.35 10.04 -122.96 -1.23 -11.58 16 28 C 0.11 3.34 4.44 86.35 0.38 3.73 16 29 H 0.24 13.64 8.31 -92.70 -0.77 12.87 16 30 H 0.06 3.34 5.59 -2.38 -0.01 3.33 16 31 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.37 9.67 9.12 -74.06 -0.68 9.00 16 35 H 0.05 2.03 7.70 -2.39 -0.02 2.01 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.09 2.45 7.00 -2.39 -0.02 2.43 16 40 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.12 2.87 6.16 -2.38 -0.01 2.86 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 2.53 4.98 -2.38 -0.01 2.52 16 48 H 0.07 2.39 6.80 -2.38 -0.02 2.37 16 Total: -1.00 -68.33 373.18 -0.24 -68.56 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.30 Total: 24.32 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 5.65 Total: 25.81 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.76 Total: -98.49 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -4.45 Total: -66.44 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.33 -0.24 -68.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692034929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.162 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds