Wall clock time and date at job start Tue Mar 31 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31716 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47366 * 300.00255 * 3 2 1 6 6 H 1.48510 * 109.46852 * 59.99931 * 3 2 1 7 7 C 1.38536 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.76200 * 99.99692 * 180.02562 * 9 7 2 11 11 N 1.31570 * 126.38973 * 359.94809 * 10 9 7 12 12 N 1.28492 * 110.16105 * 180.02562 * 11 10 9 13 13 C 1.31807 * 110.01024 * 0.02562 * 12 11 10 14 14 C 1.46967 * 126.49428 * 180.02562 * 13 12 11 15 15 C 1.36274 * 125.33324 * 344.69399 * 14 13 12 16 16 C 1.37750 * 114.41732 * 179.78985 * 15 14 13 17 17 C 1.33709 * 115.19889 * 0.50097 * 16 15 14 18 18 S 1.75835 * 109.97573 * 359.72787 * 17 16 15 19 19 N 1.37172 * 126.38692 * 179.97438 * 10 9 7 20 20 C 1.40126 * 127.20568 * 0.21845 * 19 10 9 21 21 C 1.38845 * 120.06805 * 114.40929 * 20 19 10 22 22 C 1.38118 * 119.92742 * 179.73953 * 21 20 19 23 23 C 1.38276 * 120.07187 * 0.53362 * 22 21 20 24 24 C 1.38286 * 120.13270 * 359.71701 * 23 22 21 25 25 C 1.38115 * 120.06731 * 0.02698 * 24 23 22 26 26 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.08001 * 122.78923 * 359.97438 * 15 14 13 28 28 H 1.07994 * 122.39996 * 180.23295 * 16 15 14 29 29 H 1.07997 * 125.01191 * 179.72986 * 17 16 15 30 30 H 1.08001 * 120.03564 * 359.97438 * 21 20 19 31 31 H 1.08007 * 119.96137 * 180.25730 * 22 21 20 32 32 H 1.08001 * 119.93675 * 179.70179 * 23 22 21 33 33 H 1.07998 * 119.96237 * 179.97438 * 24 23 22 34 34 H 1.08001 * 120.03191 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2511 1.6178 0.0000 4 1 3.7111 1.3465 0.0006 5 1 1.8923 2.3965 -1.2124 6 1 1.8923 2.3965 1.2126 7 6 2.0099 -1.1997 -0.0005 8 1 3.0899 -1.1996 -0.0001 9 16 1.1289 -2.7256 -0.0005 10 6 2.4787 -3.8582 -0.0005 11 7 3.7575 -3.5485 -0.0015 12 7 4.4718 -4.6166 -0.0017 13 6 3.6930 -5.6800 -0.0015 14 6 4.1298 -7.0832 -0.0010 15 6 5.3879 -7.5171 -0.2943 16 6 5.5508 -8.8830 -0.2207 17 6 4.4539 -9.5699 0.1149 18 16 3.1090 -8.4664 0.3707 19 7 2.3923 -5.2272 0.0000 20 6 1.2252 -6.0025 -0.0037 21 6 0.9243 -6.8017 -1.0985 22 6 -0.2242 -7.5689 -1.0968 23 6 -1.0796 -7.5332 -0.0110 24 6 -0.7853 -6.7343 1.0787 25 6 0.3643 -5.9689 1.0852 26 1 -0.4850 0.8400 0.0004 27 1 6.1912 -6.8457 -0.5594 28 1 6.4957 -9.3648 -0.4238 29 1 4.4016 -10.6440 0.2142 30 1 1.5896 -6.8263 -1.9489 31 1 -0.4566 -8.1940 -1.9464 32 1 -1.9795 -8.1304 -0.0140 33 1 -1.4556 -6.7082 1.9251 34 1 0.5934 -5.3448 1.9363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002671168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:45 Heat of formation + Delta-G solvation = 139.148823 kcal Electronic energy + Delta-G solvation = -22064.996393 eV Core-core repulsion = 18796.183687 eV Total energy + Delta-G solvation = -3268.812705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.035 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18748 -39.13291 -37.57026 -34.46856 -32.71784 -31.53694 -31.00011 -29.54050 -28.14038 -25.77073 -24.54702 -23.50458 -22.85087 -21.67661 -21.17211 -19.01820 -18.56692 -17.85987 -16.85305 -16.13451 -15.92410 -15.71895 -15.18112 -14.98641 -14.48941 -14.29943 -13.78567 -13.52638 -13.17482 -13.01733 -12.80818 -12.60256 -12.25317 -11.94951 -11.43352 -11.39718 -11.19773 -11.11332 -10.88534 -10.76782 -10.33223 -10.17548 -10.06958 -9.96548 -9.27788 -9.11023 -8.91058 -8.77965 -8.45007 -8.28211 -6.80292 -6.52908 -4.27616 0.58801 1.06273 1.27986 1.48457 1.95303 2.22676 2.30582 2.84163 3.12885 3.15926 3.21542 3.32587 3.55482 3.62007 3.96868 4.51428 4.81961 4.84370 4.91446 4.97575 5.00041 5.02246 5.26763 5.29422 5.41517 5.53310 5.59120 5.81350 5.88419 6.00444 6.14645 6.24739 6.25436 6.37530 6.39028 6.46166 6.55126 6.72107 7.39772 7.51806 8.31658 8.99186 9.26454 10.54981 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.015347 B = 0.004322 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.007550 B = 6477.071340 C = 8032.077318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.077 3.923 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.107 0.893 9 S 0.160 5.840 10 C 0.183 3.817 11 N -0.301 5.301 12 N -0.254 5.254 13 C 0.202 3.798 14 C -0.098 4.098 15 C -0.108 4.108 16 C -0.128 4.128 17 C -0.229 4.229 18 S 0.139 5.861 19 N -0.439 5.439 20 C 0.121 3.879 21 C -0.098 4.098 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.106 4.106 25 C -0.094 4.094 26 H 0.275 0.725 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.164 0.836 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -19.800 0.066 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.133 4.133 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.686 4.686 8 H 0.125 0.875 9 S 0.395 5.605 10 C -0.185 4.185 11 N -0.147 5.147 12 N -0.096 5.096 13 C -0.064 4.064 14 C -0.218 4.218 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.366 4.366 18 S 0.403 5.597 19 N -0.134 5.134 20 C 0.029 3.971 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.084 0.916 27 H 0.167 0.833 28 H 0.160 0.840 29 H 0.182 0.818 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.222 -19.076 0.481 19.211 hybrid contribution 2.150 0.652 -0.409 2.284 sum -0.072 -18.424 0.072 18.425 Atomic orbital electron populations 1.69986 1.06054 1.28494 1.46581 1.25069 0.95210 0.99697 0.93281 0.85866 0.80207 0.80186 0.77991 1.18747 1.20272 1.20275 1.23310 0.97440 0.89224 1.58626 0.87501 1.83642 0.97082 0.95059 1.84758 1.28715 1.02350 0.84712 1.02692 1.74794 0.98706 1.18126 1.23026 1.74385 1.26038 0.93903 1.15260 1.21491 0.80351 0.93253 1.11285 1.21640 0.97827 0.91498 1.10848 1.20591 0.96045 0.95436 1.02113 1.19990 0.99517 0.93192 1.03176 1.25849 0.96871 1.03435 1.10417 1.84438 1.12155 0.95424 1.67635 1.43770 1.04709 1.05416 1.59500 1.17568 0.87468 0.96187 0.95905 1.21156 0.97727 0.96434 0.96523 1.20977 0.93719 0.99087 0.98879 1.21260 0.99289 0.98598 0.93530 1.21044 0.96248 0.96179 0.99022 1.21261 0.94250 0.98613 0.97241 0.91568 0.83272 0.83994 0.81840 0.85585 0.85134 0.85389 0.84952 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.26 13.22 55.48 0.73 -23.52 16 2 C 0.08 2.08 5.49 -17.49 -0.10 1.98 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.03 9.36 30.84 0.29 -14.74 16 8 H 0.11 3.09 6.92 -52.49 -0.36 2.73 16 9 S 0.16 4.03 21.58 -107.50 -2.32 1.71 16 10 C 0.18 4.38 8.01 -87.50 -0.70 3.68 16 11 N -0.30 -7.69 11.02 30.85 0.34 -7.35 16 12 N -0.25 -5.89 12.22 32.50 0.40 -5.49 16 13 C 0.20 4.07 7.82 -153.56 -1.20 2.87 16 14 C -0.10 -1.58 6.40 -36.75 -0.24 -1.82 16 15 C -0.11 -1.51 10.15 -40.47 -0.41 -1.92 16 16 C -0.13 -1.40 10.15 -41.35 -0.42 -1.82 16 17 C -0.23 -2.36 11.21 29.14 0.33 -2.03 16 18 S 0.14 1.76 20.28 -107.50 -2.18 -0.42 16 19 N -0.44 -8.89 2.87 -58.20 -0.17 -9.06 16 20 C 0.12 2.01 4.24 -83.62 -0.35 1.65 16 21 C -0.10 -1.38 8.30 -39.40 -0.33 -1.70 16 22 C -0.11 -1.17 10.04 -39.61 -0.40 -1.57 16 23 C -0.11 -1.09 10.04 -39.55 -0.40 -1.49 16 24 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 25 C -0.09 -1.41 9.93 -39.40 -0.39 -1.80 16 26 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 27 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -32.11 332.93 -10.80 -42.90 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -2.88 Total: 0.38 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.71 Total: -20.32 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 1.30 Total: -45.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -4.50 Total: 1.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.11 -10.80 -42.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002671168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.052 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds