Wall clock time and date at job start Tue Mar 31 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48506 * 109.47205 * 269.99764 * 3 2 1 5 5 H 1.48500 * 109.47455 * 29.99410 * 3 2 1 6 6 H 1.48500 * 109.47362 * 150.00024 * 3 2 1 7 7 C 1.38840 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99998 * 359.97438 * 7 2 1 9 9 O 1.34834 * 119.99980 * 180.02562 * 7 2 1 10 10 C 1.34706 * 116.99803 * 179.97438 * 9 7 2 11 11 O 1.21493 * 120.00464 * 0.02562 * 10 9 7 12 12 C 1.47823 * 120.00117 * 180.02562 * 10 9 7 13 13 N 1.32927 * 119.71528 * 359.72443 * 12 10 9 14 14 C 1.31537 * 121.66700 * 179.74932 * 13 12 10 15 15 Cl 1.73598 * 119.54438 * 180.26777 * 14 13 12 16 16 C 1.38918 * 120.91046 * 0.53389 * 14 13 12 17 17 Cl 1.73595 * 120.33159 * 179.71903 * 16 14 13 18 18 C 1.38745 * 119.33579 * 359.73369 * 16 14 13 19 19 Cl 1.73604 * 120.76292 * 180.02562 * 18 16 14 20 20 C 1.38893 * 118.47035 * 0.02562 * 18 16 14 21 21 Cl 1.73601 * 120.47311 * 180.02562 * 20 18 16 22 22 H 0.97005 * 120.00020 * 0.02562 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5455 1.4403 0.7000 7 6 2.0082 -1.2024 0.0005 8 1 1.4682 -2.1377 0.0014 9 8 3.3565 -1.2023 0.0011 10 6 3.9681 -2.4026 0.0021 11 8 3.3064 -3.4216 0.0021 12 6 5.4443 -2.4800 0.0033 13 7 6.1627 -1.3616 -0.0022 14 6 7.4778 -1.3857 0.0035 15 17 8.3614 0.1086 0.0029 16 6 8.1695 -2.5904 0.0045 17 17 9.9054 -2.6047 0.0048 18 6 7.4591 -3.7822 0.0050 19 17 8.2857 -5.3088 0.0070 20 6 6.0713 -3.7257 0.0040 21 17 5.1307 -5.1848 0.0052 22 1 -0.4850 0.8401 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003364961.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:00 Heat of formation + Delta-G solvation = -47.395713 kcal Electronic energy + Delta-G solvation = -18359.487642 eV Core-core repulsion = 14633.840612 eV Total energy + Delta-G solvation = -3725.647030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 328.897 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83091 -39.10460 -37.37554 -37.21328 -36.86090 -36.57790 -35.54012 -32.77173 -32.48434 -31.22897 -26.49828 -24.69343 -24.03793 -21.05876 -18.43725 -18.31105 -17.89916 -17.00209 -16.05414 -15.82966 -15.29262 -14.81260 -14.66320 -14.27368 -13.77316 -13.17191 -12.72204 -12.65515 -12.33259 -12.04822 -11.96794 -11.67349 -11.51463 -11.33709 -11.27283 -11.11065 -10.65334 -10.53177 -10.33166 -9.96677 -9.70593 -9.14963 -9.07558 -8.92608 -6.71413 -4.32036 -0.10735 0.30336 1.02838 1.31336 1.58032 2.02108 2.44541 3.09716 3.14905 3.31365 3.41775 3.64889 4.05548 4.07914 4.15868 4.49216 4.62372 4.86872 5.12549 6.05697 7.07771 7.39587 7.69967 8.32873 8.64485 9.37139 10.32940 Molecular weight = 328.90amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.005272 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.752550 B = 5309.455752 C = 7178.365831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.352 4.352 8 H 0.119 0.881 9 O -0.206 6.206 10 C 0.429 3.571 11 O -0.509 6.509 12 C 0.176 3.824 13 N -0.409 5.409 14 C 0.197 3.803 15 Cl 0.008 6.992 16 C -0.071 4.071 17 Cl -0.009 7.009 18 C 0.018 3.982 19 Cl 0.000 7.000 20 C -0.042 4.042 21 Cl 0.025 6.975 22 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 -4.575 0.052 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.427 4.427 8 H 0.137 0.863 9 O -0.112 6.112 10 C 0.276 3.724 11 O -0.404 6.404 12 C 0.039 3.961 13 N -0.123 5.123 14 C 0.028 3.972 15 Cl 0.037 6.963 16 C -0.104 4.104 17 Cl 0.020 6.980 18 C -0.018 4.018 19 Cl 0.030 6.970 20 C -0.073 4.073 21 Cl 0.055 6.945 22 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.826 -4.049 0.050 18.280 hybrid contribution 0.892 -0.078 -0.019 0.896 sum 18.718 -4.127 0.030 19.168 Atomic orbital electron populations 1.69576 1.06021 1.29578 1.42476 1.24698 0.95110 0.99438 0.94876 0.86190 0.80914 0.80423 0.79750 1.19263 1.20315 1.17152 1.21010 0.76054 0.97491 1.48105 0.86306 1.83598 1.23769 1.30649 1.73166 1.19258 0.85009 0.83519 0.84643 1.90822 1.63975 1.34937 1.50686 1.20322 0.93777 0.85464 0.96579 1.67535 1.04578 1.29738 1.10473 1.21491 0.89316 0.87441 0.98961 1.98442 1.71571 1.30254 1.96019 1.21454 0.88179 0.91770 1.08964 1.98409 1.04568 1.98662 1.96385 1.20686 0.90453 0.88589 1.02097 1.98430 1.77104 1.25419 1.96075 1.21645 0.89985 0.91769 1.03941 1.98459 1.70572 1.29974 1.95519 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.02 13.95 55.49 0.77 -22.25 14 2 C 0.07 1.80 5.50 -17.52 -0.10 1.71 14 3 Si 0.90 20.48 28.62 -169.99 -4.86 15.62 14 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 14 6 H -0.25 -5.68 7.11 56.52 0.40 -5.28 14 7 C -0.35 -9.80 10.11 30.95 0.31 -9.49 14 8 H 0.12 3.58 7.09 -52.49 -0.37 3.21 14 9 O -0.21 -5.33 8.38 -21.51 -0.18 -5.51 14 10 C 0.43 10.05 7.87 34.65 0.27 10.32 14 11 O -0.51 -12.54 13.18 -19.26 -0.25 -12.79 14 12 C 0.18 3.41 6.75 -83.02 -0.56 2.85 14 13 N -0.41 -7.59 10.09 -6.93 -0.07 -7.66 14 14 C 0.20 3.01 7.28 -17.43 -0.13 2.88 14 15 Cl 0.01 0.11 28.12 -51.86 -1.46 -1.35 14 16 C -0.07 -0.96 6.36 -39.14 -0.25 -1.21 14 17 Cl -0.01 -0.10 27.09 -51.86 -1.40 -1.51 14 18 C 0.02 0.25 6.37 -39.15 -0.25 0.00 14 19 Cl 0.00 0.00 27.23 -51.86 -1.41 -1.41 14 20 C -0.04 -0.69 6.38 -38.88 -0.25 -0.94 14 21 Cl 0.03 0.41 25.15 -51.86 -1.30 -0.89 14 22 H 0.29 7.15 8.31 -40.82 -0.34 6.81 14 LS Contribution 275.15 15.07 4.15 4.15 Total: -1.00 -27.41 275.15 -6.48 -33.88 By element: Atomic # 1 Polarization: -6.89 SS G_CDS: 0.49 Total: -6.40 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.94 Total: 6.12 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.70 Total: -29.91 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.43 Total: -18.30 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.86 Total: 15.62 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -5.58 Total: -5.15 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.41 -6.48 -33.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003364961.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.513 kcal (2) G-P(sol) polarization free energy of solvation -27.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds