Wall clock time and date at job start Tue Mar 31 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.50695 * 109.47390 * 89.99689 * 11 10 9 13 13 C 1.33394 * 125.20470 * 89.99761 * 12 11 10 14 14 C 1.38419 * 114.92228 * 179.97438 * 13 12 11 15 15 C 1.33390 * 114.92343 * 0.02562 * 14 13 12 16 16 S 1.75882 * 125.20550 * 269.69377 * 12 11 10 17 17 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 18 18 O 1.21283 * 120.00062 * 180.02562 * 17 10 9 19 19 C 1.50700 * 120.00216 * 0.02562 * 17 10 9 20 20 S 1.81397 * 109.47435 * 180.02562 * 19 17 10 21 21 C 1.81399 * 103.00127 * 180.02562 * 20 19 17 22 22 C 1.50704 * 109.46999 * 180.02562 * 21 20 19 23 23 O 1.20830 * 119.99902 * 0.02562 * 22 21 20 24 24 O 1.34225 * 119.99978 * 179.97438 * 22 21 20 25 25 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 28 28 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 29 29 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 30 30 H 1.08002 * 122.53800 * 359.96101 * 13 12 11 31 31 H 1.08001 * 122.53995 * 180.02562 * 14 13 12 32 32 H 1.07997 * 125.20331 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47357 * 300.00116 * 19 17 10 34 34 H 1.08998 * 109.46869 * 60.00030 * 19 17 10 35 35 H 1.09002 * 109.47122 * 299.99553 * 21 20 19 36 36 H 1.08993 * 109.47180 * 59.99870 * 21 20 19 37 37 H 0.96702 * 117.00329 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2435 -3.2662 -1.2697 12 6 5.6665 -3.0295 -1.7053 13 6 6.7076 -3.7986 -1.3826 14 6 7.9223 -3.3833 -1.9003 15 6 7.8679 -2.2766 -2.6431 16 16 6.2078 -1.7013 -2.7233 17 6 4.2248 -3.2105 1.1662 18 8 4.6295 -4.3538 1.1663 19 6 3.9737 -2.5000 2.4713 20 16 4.3679 -3.6108 3.8501 21 6 4.0076 -2.5944 5.3088 22 6 4.2905 -3.3895 6.5574 23 8 4.6943 -4.5251 6.4719 24 8 4.0949 -2.8358 7.7644 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 4.0765 -4.3354 -1.1391 29 1 3.5624 -2.8822 -2.0291 30 1 6.6101 -4.6785 -0.7640 31 1 8.8443 -3.9149 -1.7168 32 1 8.7131 -1.8086 -3.1257 33 1 4.6036 -1.6123 2.5288 34 1 2.9256 -2.2062 2.5292 35 1 4.6361 -1.7039 5.2954 36 1 2.9586 -2.2990 5.2956 37 1 4.2906 -3.3846 8.5361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004332784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:02 Heat of formation + Delta-G solvation = -80.474236 kcal Electronic energy + Delta-G solvation = -22893.166270 eV Core-core repulsion = 19275.228323 eV Total energy + Delta-G solvation = -3617.937947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.059 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28435 -39.40337 -37.50045 -36.30526 -35.30618 -32.77137 -31.28366 -30.53764 -29.07768 -27.96233 -25.59148 -22.88181 -22.69435 -22.19789 -19.20350 -18.78589 -18.29147 -17.38339 -16.94465 -16.82751 -16.36854 -16.27540 -15.97255 -15.36005 -15.25553 -14.83324 -14.24701 -13.57213 -13.37276 -13.26356 -13.00941 -12.94212 -12.69801 -12.53643 -12.36792 -12.28377 -12.04123 -11.87591 -11.69970 -11.32589 -11.04542 -10.83654 -10.80333 -10.49720 -10.39997 -9.85033 -9.73435 -9.47234 -8.84982 -8.52823 -8.28364 -8.02274 -7.49390 -6.33425 -4.36921 1.11846 1.31771 1.82689 2.01445 2.20422 2.53618 2.89267 2.94270 3.08534 3.10507 3.15564 3.18875 3.77926 4.15323 4.81783 4.93404 4.97827 5.03795 5.05988 5.14624 5.19584 5.35162 5.55176 5.72168 5.77963 5.80687 6.05059 6.24730 6.26433 6.33824 6.48235 6.52113 6.68371 7.07512 7.29292 7.67379 7.88466 8.24094 8.62899 8.73978 9.24815 10.78669 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.004555 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.865722 B = 6145.491640 C = 8562.318236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.080 3.920 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.207 3.793 10 N -0.581 5.581 11 C 0.189 3.811 12 C -0.180 4.180 13 C -0.126 4.126 14 C -0.134 4.134 15 C -0.224 4.224 16 S 0.098 5.902 17 C 0.543 3.457 18 O -0.544 6.544 19 C -0.134 4.134 20 S -0.116 6.116 21 C -0.128 4.128 22 C 0.500 3.500 23 O -0.493 6.493 24 O -0.514 6.514 25 H 0.268 0.732 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.401 -1.048 4.309 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.693 3.307 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.086 3.914 10 N -0.311 5.311 11 C 0.064 3.936 12 C -0.299 4.299 13 C -0.157 4.157 14 C -0.165 4.165 15 C -0.360 4.360 16 S 0.361 5.639 17 C 0.329 3.671 18 O -0.423 6.423 19 C -0.285 4.285 20 S 0.108 5.892 21 C -0.276 4.276 22 C 0.340 3.660 23 O -0.379 6.379 24 O -0.326 6.326 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 11.104 -1.383 3.194 11.637 hybrid contribution 0.664 1.095 1.147 1.719 sum 11.768 -0.288 4.341 12.546 Atomic orbital electron populations 1.69889 1.06198 1.27352 1.48838 1.24859 0.94705 0.98824 0.94085 0.86992 0.80389 0.84058 0.79259 1.19619 1.20737 1.18856 1.21356 0.88774 0.95203 1.53188 0.90069 1.19894 0.96020 0.77678 0.97827 1.47819 1.63558 1.15994 1.03745 1.19758 0.88606 0.99131 0.86111 1.25097 1.00956 0.99330 1.04507 1.20263 0.91274 1.02104 1.02086 1.20174 0.99003 0.97381 0.99951 1.25599 1.00204 1.02178 1.07972 1.84399 1.00765 1.29196 1.49544 1.19347 0.77252 0.86026 0.84445 1.90659 1.46958 1.17567 1.87084 1.23688 1.08348 1.01687 0.94756 1.87907 1.87797 1.19111 0.94358 1.23146 1.08304 1.02874 0.93300 1.22296 0.73950 0.85399 0.84376 1.90785 1.41156 1.18905 1.87077 1.84496 1.81385 1.50167 1.16602 0.92199 0.94812 0.95012 0.88411 0.88785 0.83881 0.84705 0.82358 0.87500 0.85331 0.86028 0.85637 0.72763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 13.96 55.43 0.77 -23.79 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 18.78 27.47 -169.99 -4.67 14.11 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 7 C -0.55 -13.47 9.83 -34.44 -0.34 -13.81 16 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 9 C 0.21 4.27 4.03 -5.19 -0.02 4.25 16 10 N -0.58 -11.16 2.44 -176.43 -0.43 -11.59 16 11 C 0.19 3.28 5.90 -5.20 -0.03 3.25 16 12 C -0.18 -2.87 6.09 -36.00 -0.22 -3.09 16 13 C -0.13 -1.91 10.05 -41.21 -0.41 -2.33 16 14 C -0.13 -1.75 10.18 -41.21 -0.42 -2.17 16 15 C -0.22 -2.79 11.23 29.04 0.33 -2.47 16 16 S 0.10 1.40 23.33 -107.50 -2.51 -1.10 16 17 C 0.54 10.52 7.69 -10.99 -0.08 10.43 16 18 O -0.54 -11.49 15.44 5.55 0.09 -11.40 16 19 C -0.13 -2.24 4.98 36.01 0.18 -2.06 16 20 S -0.12 -1.88 20.01 -107.50 -2.15 -4.04 16 21 C -0.13 -1.49 6.54 36.01 0.24 -1.26 16 22 C 0.50 6.03 8.35 36.01 0.30 6.33 16 23 O -0.49 -7.70 16.62 -18.75 -0.31 -8.01 16 24 O -0.51 -4.49 13.42 -39.24 -0.53 -5.01 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.03 0.67 5.50 -51.93 -0.29 0.39 16 27 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 28 H 0.10 1.69 7.42 -51.93 -0.39 1.31 16 29 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 30 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.11 1.58 7.40 -51.92 -0.38 1.19 16 34 H 0.13 2.21 8.00 -51.93 -0.42 1.80 16 35 H 0.12 1.14 8.14 -51.92 -0.42 0.72 16 36 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.41 1.78 9.10 45.56 0.41 2.20 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -31.75 353.61 -8.56 -40.31 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.57 Total: 6.17 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -0.58 Total: -0.97 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.34 Total: -35.38 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.75 Total: -24.43 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.67 Total: 14.11 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -4.66 Total: -5.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.75 -8.56 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004332784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.162 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds