Wall clock time and date at job start Tue Mar 31 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.50695 * 109.47390 * 89.99689 * 11 10 9 13 13 C 1.33394 * 125.20470 * 89.99761 * 12 11 10 14 14 C 1.38419 * 114.92228 * 179.97438 * 13 12 11 15 15 C 1.33390 * 114.92343 * 0.02562 * 14 13 12 16 16 S 1.75882 * 125.20550 * 269.69377 * 12 11 10 17 17 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 18 18 O 1.21283 * 120.00062 * 180.02562 * 17 10 9 19 19 C 1.50700 * 120.00216 * 0.02562 * 17 10 9 20 20 S 1.81397 * 109.47435 * 180.02562 * 19 17 10 21 21 C 1.81399 * 103.00127 * 180.02562 * 20 19 17 22 22 C 1.50704 * 109.46999 * 180.02562 * 21 20 19 23 23 O 1.20830 * 119.99902 * 0.02562 * 22 21 20 24 24 O 1.34225 * 119.99978 * 179.97438 * 22 21 20 25 25 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 27 27 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 28 28 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 29 29 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 30 30 H 1.08002 * 122.53800 * 359.96101 * 13 12 11 31 31 H 1.08001 * 122.53995 * 180.02562 * 14 13 12 32 32 H 1.07997 * 125.20331 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47357 * 300.00116 * 19 17 10 34 34 H 1.08998 * 109.46869 * 60.00030 * 19 17 10 35 35 H 1.09002 * 109.47122 * 299.99553 * 21 20 19 36 36 H 1.08993 * 109.47180 * 59.99870 * 21 20 19 37 37 H 0.96702 * 117.00329 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2435 -3.2662 -1.2697 12 6 5.6665 -3.0295 -1.7053 13 6 6.7076 -3.7986 -1.3826 14 6 7.9223 -3.3833 -1.9003 15 6 7.8679 -2.2766 -2.6431 16 16 6.2078 -1.7013 -2.7233 17 6 4.2248 -3.2105 1.1662 18 8 4.6295 -4.3538 1.1663 19 6 3.9737 -2.5000 2.4713 20 16 4.3679 -3.6108 3.8501 21 6 4.0076 -2.5944 5.3088 22 6 4.2905 -3.3895 6.5574 23 8 4.6943 -4.5251 6.4719 24 8 4.0949 -2.8358 7.7644 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 4.0765 -4.3354 -1.1391 29 1 3.5624 -2.8822 -2.0291 30 1 6.6101 -4.6785 -0.7640 31 1 8.8443 -3.9149 -1.7168 32 1 8.7131 -1.8086 -3.1257 33 1 4.6036 -1.6123 2.5288 34 1 2.9256 -2.2062 2.5292 35 1 4.6361 -1.7039 5.2954 36 1 2.9586 -2.2990 5.2956 37 1 4.2906 -3.3846 8.5361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004332784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:02 Heat of formation + Delta-G solvation = -100.487189 kcal Electronic energy + Delta-G solvation = -22894.034096 eV Core-core repulsion = 19275.228323 eV Total energy + Delta-G solvation = -3618.805773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.059 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22097 -40.89359 -38.64907 -37.17944 -36.88046 -34.63115 -32.64681 -31.52072 -30.45279 -29.59484 -26.87329 -24.53314 -23.97566 -23.11764 -20.52396 -20.03085 -19.19753 -19.16225 -18.34136 -18.04233 -17.73969 -17.22355 -17.14806 -16.64416 -16.58426 -16.19643 -15.90636 -14.92733 -14.59314 -14.39880 -14.21927 -14.12616 -14.01211 -13.85389 -13.71040 -13.58192 -13.38813 -13.23919 -12.96853 -12.60937 -12.52557 -12.35620 -12.01057 -11.80840 -11.72287 -11.62709 -11.03421 -10.97853 -10.77928 -9.72179 -9.54797 -9.38434 -8.75433 -8.29836 -6.38480 0.00126 0.19004 0.71678 1.09058 1.11950 1.36751 1.40836 1.42965 1.51056 1.59270 1.78861 2.08690 2.33859 2.35024 3.03823 3.52901 3.84920 3.99027 4.06072 4.17551 4.19807 4.27234 4.32684 4.39747 4.57546 4.64353 4.71205 4.74493 4.82112 5.22741 5.39052 5.42868 5.51788 5.52157 5.58907 6.14024 6.47707 6.68430 6.90352 7.11797 7.28889 8.85904 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.004555 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.865722 B = 6145.491640 C = 8562.318236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.232 1.232 7 C -0.542 4.542 8 H 0.034 0.966 9 C 0.217 3.783 10 N -0.584 5.584 11 C 0.189 3.811 12 C -0.205 4.205 13 C -0.125 4.125 14 C -0.144 4.144 15 C -0.202 4.202 16 S 0.091 5.909 17 C 0.534 3.466 18 O -0.566 6.566 19 C -0.121 4.121 20 S -0.173 6.173 21 C -0.115 4.115 22 C 0.508 3.492 23 O -0.536 6.536 24 O -0.500 6.500 25 H 0.269 0.731 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.162 0.838 32 H 0.193 0.807 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.019 1.149 4.901 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.155 1.155 7 C -0.581 4.581 8 H 0.052 0.948 9 C 0.095 3.905 10 N -0.314 5.314 11 C 0.065 3.935 12 C -0.323 4.323 13 C -0.157 4.157 14 C -0.174 4.174 15 C -0.338 4.338 16 S 0.354 5.646 17 C 0.321 3.679 18 O -0.447 6.447 19 C -0.272 4.272 20 S 0.052 5.948 21 C -0.263 4.263 22 C 0.350 3.650 23 O -0.426 6.426 24 O -0.315 6.315 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.179 0.821 32 H 0.210 0.790 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 13.740 0.806 3.806 14.280 hybrid contribution -0.179 0.318 1.013 1.077 sum 13.560 1.124 4.819 14.435 Atomic orbital electron populations 1.70048 1.08358 1.28408 1.50941 1.25707 0.95327 1.02779 0.93575 0.85956 0.80187 0.78811 0.79676 1.19225 1.20954 1.15515 1.21458 0.90908 0.93386 1.52312 0.94757 1.19712 0.93136 0.78730 0.98887 1.47867 1.63380 1.15653 1.04498 1.19696 0.90072 0.98363 0.85406 1.24853 1.00036 1.01055 1.06374 1.20365 0.92236 1.01465 1.01611 1.20374 0.99025 0.97951 1.00027 1.25990 0.99802 1.01332 1.06663 1.84374 1.02488 1.28553 1.49150 1.19840 0.76738 0.85954 0.85323 1.90641 1.47959 1.18568 1.87515 1.23544 1.08139 1.02049 0.93460 1.88100 1.88050 1.21656 0.97015 1.23163 1.10043 1.02493 0.90609 1.22291 0.72860 0.84610 0.85272 1.90784 1.43365 1.20729 1.87731 1.84446 1.80557 1.50119 1.16371 0.92209 0.92866 0.94107 0.89455 0.89378 0.85156 0.82083 0.78953 0.85060 0.86174 0.82952 0.83860 0.70339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.31 13.96 21.45 0.30 -53.01 16 2 C 0.03 1.32 5.47 84.65 0.46 1.78 16 3 Si 0.93 37.40 27.47 68.60 1.88 39.29 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.23 -8.10 6.54 99.48 0.65 -7.45 16 7 C -0.54 -27.15 9.83 25.60 0.25 -26.89 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 9 C 0.22 8.74 4.03 85.63 0.35 9.09 16 10 N -0.58 -22.60 2.44 -830.51 -2.03 -24.62 16 11 C 0.19 6.77 5.90 85.63 0.50 7.27 16 12 C -0.20 -6.44 6.09 24.59 0.15 -6.29 16 13 C -0.12 -3.69 10.05 21.22 0.21 -3.48 16 14 C -0.14 -3.37 10.18 21.22 0.22 -3.15 16 15 C -0.20 -4.36 11.23 66.72 0.75 -3.61 16 16 S 0.09 2.45 23.33 -56.49 -1.32 1.13 16 17 C 0.53 20.89 7.69 87.66 0.67 21.56 16 18 O -0.57 -24.61 15.44 -3.04 -0.05 -24.66 16 19 C -0.12 -3.97 4.98 71.24 0.35 -3.62 16 20 S -0.17 -5.54 20.01 -56.49 -1.13 -6.67 16 21 C -0.11 -2.42 6.54 71.24 0.47 -1.96 16 22 C 0.51 11.34 8.35 71.24 0.59 11.93 16 23 O -0.54 -16.48 16.62 21.95 0.36 -16.11 16 24 O -0.50 -7.35 13.42 -51.37 -0.69 -8.04 16 25 H 0.27 14.31 8.31 -92.71 -0.77 13.53 16 26 H 0.05 1.96 5.50 -2.38 -0.01 1.95 16 27 H 0.04 1.60 7.50 -2.39 -0.02 1.58 16 28 H 0.09 3.22 7.42 -2.39 -0.02 3.20 16 29 H 0.09 3.16 8.07 -2.39 -0.02 3.14 16 30 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.13 3.56 7.40 -2.39 -0.02 3.55 16 34 H 0.12 4.12 8.00 -2.39 -0.02 4.10 16 35 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.43 2.60 9.10 -74.06 -0.67 1.93 16 Total: -1.00 -71.27 353.61 2.70 -68.57 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.38 Total: 21.49 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 4.98 Total: 2.64 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.73 Total: -77.63 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.37 Total: -48.81 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.88 Total: 39.29 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.45 Total: -5.54 kcal Total: -71.27 2.70 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004332784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.922 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds