Wall clock time and date at job start Tue Mar 31 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47039 * 285.99955 * 3 2 1 5 5 N 1.46507 * 109.47067 * 180.02562 * 4 3 2 6 6 C 1.36691 * 127.27795 * 269.95914 * 5 4 3 7 7 S 1.71192 * 123.69395 * 345.59946 * 6 5 4 8 8 N 1.35301 * 112.39894 * 165.70435 * 6 5 4 9 9 C 1.46500 * 126.67809 * 166.57679 * 8 6 5 10 10 C 1.50703 * 109.46905 * 269.51018 * 9 8 6 11 11 H 1.08005 * 119.99762 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00235 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99963 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00392 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46740 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47043 * 119.99465 * 14 12 10 17 17 H 1.48494 * 109.46970 * 240.00093 * 14 12 10 18 18 C 1.43257 * 105.81491 * 346.16575 * 8 6 5 19 19 H 1.09002 * 107.18738 * 283.06244 * 18 8 6 20 20 C 1.50094 * 127.34296 * 154.13768 * 18 8 6 21 21 S 1.84385 * 102.98915 * 206.30940 * 20 18 8 22 22 O 1.42097 * 109.43526 * 119.80922 * 21 20 18 23 23 O 1.42103 * 109.42852 * 253.23788 * 21 20 18 24 24 C 1.84702 * 96.51345 * 6.52228 * 21 20 18 25 25 C 1.44503 * 127.28490 * 90.00204 * 5 4 3 26 26 H 1.08998 * 109.81270 * 97.89529 * 25 5 4 27 27 H 1.09006 * 109.46895 * 166.00476 * 3 2 1 28 28 H 1.08996 * 109.47731 * 46.00409 * 3 2 1 29 29 H 1.08999 * 109.47492 * 60.00639 * 4 3 2 30 30 H 1.09002 * 109.47636 * 300.00187 * 4 3 2 31 31 H 1.09000 * 109.47052 * 29.50075 * 9 8 6 32 32 H 1.08991 * 109.47558 * 149.50881 * 9 8 6 33 33 H 0.97004 * 120.00515 * 179.97438 * 13 12 10 34 34 H 1.09000 * 110.71355 * 324.68213 * 20 18 8 35 35 H 1.09001 * 110.71294 * 87.75575 * 20 18 8 36 36 H 1.09000 * 111.17143 * 142.48945 * 24 21 20 37 37 H 1.09002 * 111.17158 * 266.77271 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1182 -0.3967 1.3866 5 7 4.5833 -0.3955 1.3868 6 6 5.4121 -1.4404 1.0877 7 16 4.8910 -3.0682 0.9904 8 7 6.6886 -1.0429 0.8800 9 6 7.8729 -1.9026 0.8128 10 6 8.4694 -2.0444 2.1895 11 1 8.0122 -1.5438 3.0302 12 6 9.5993 -2.8123 2.3755 13 7 10.1562 -3.4215 1.3517 14 14 10.3391 -2.9875 4.0818 15 1 9.5307 -2.2088 5.0541 16 1 10.3428 -4.4195 4.4751 17 1 11.7320 -2.4730 4.0726 18 6 6.6349 0.3809 0.7315 19 1 6.2607 0.5863 -0.2715 20 6 7.7311 1.3674 1.0106 21 16 6.8069 2.9145 1.4010 22 8 7.1262 3.3358 2.7200 23 8 6.9266 3.8233 0.3152 24 6 5.1210 2.1603 1.3880 25 6 5.4577 0.7104 1.7040 26 1 5.7935 0.6311 2.7379 27 1 2.9709 0.9980 -0.2485 28 1 2.9718 -0.7129 -0.7392 29 1 2.7554 -1.3940 1.6352 30 1 2.7546 0.3170 2.1259 31 1 7.5876 -2.8854 0.4376 32 1 8.6079 -1.4571 0.1426 33 1 10.9514 -3.9615 1.4824 34 1 8.3280 1.0489 1.8652 35 1 8.3609 1.5029 0.1313 36 1 4.4891 2.5954 2.1623 37 1 4.6564 2.2515 0.4062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005010641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:30 Heat of formation + Delta-G solvation = 26.674700 kcal Electronic energy + Delta-G solvation = -24171.969028 eV Core-core repulsion = 20590.970159 eV Total energy + Delta-G solvation = -3580.998869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80422 -37.45796 -37.28984 -36.42734 -35.59607 -34.63372 -33.02136 -31.76218 -29.83283 -27.98166 -25.48620 -25.03313 -23.19555 -21.60744 -20.56223 -19.27179 -18.47072 -17.78132 -17.27273 -16.85934 -16.63734 -16.44072 -16.01371 -15.50422 -15.05023 -14.89399 -14.75447 -14.63069 -14.17532 -13.94133 -13.12529 -12.96860 -12.93824 -12.82370 -12.53038 -12.43530 -12.26994 -12.09355 -12.06255 -11.65780 -11.56842 -11.44816 -11.30851 -11.00130 -10.97995 -10.88535 -10.62549 -10.34742 -9.82245 -8.69846 -8.44735 -7.33777 -7.03212 -6.30956 -4.39531 -0.50337 1.51233 1.84837 2.05539 2.49174 2.51757 2.87518 3.10343 3.16602 3.18852 3.26389 3.29166 3.53389 3.67205 3.80167 3.95848 4.18807 4.31081 4.32354 4.45136 4.49012 4.59760 4.86073 4.94909 5.03862 5.10030 5.16933 5.26855 5.51802 5.57759 5.76206 6.47475 6.54193 6.98899 7.26882 7.34769 7.43478 7.63944 7.81414 8.61687 9.27337 10.76395 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.005487 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.301289 B = 5101.386732 C = 7251.628758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.214 3.786 3 C -0.049 4.049 4 C 0.150 3.850 5 N -0.587 5.587 6 C 0.558 3.442 7 S -0.606 6.606 8 N -0.520 5.520 9 C 0.256 3.744 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.071 3.929 13 N -0.884 5.884 14 Si 0.901 3.099 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.282 1.282 18 C 0.109 3.891 19 H 0.085 0.915 20 C -0.567 4.567 21 S 2.390 3.610 22 O -0.917 6.917 23 O -0.922 6.922 24 C -0.582 4.582 25 C 0.094 3.906 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.268 0.732 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 13.957 -2.028 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.105 4.105 3 C -0.091 4.091 4 C 0.026 3.974 5 N -0.305 5.305 6 C 0.205 3.795 7 S -0.473 6.473 8 N -0.227 5.227 9 C 0.140 3.860 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.133 4.133 13 N -0.522 5.522 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.208 1.208 18 C -0.002 4.002 19 H 0.103 0.897 20 C -0.697 4.697 21 S 2.569 3.431 22 O -0.913 6.913 23 O -0.919 6.919 24 C -0.710 4.710 25 C -0.016 4.016 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.972 13.791 -2.005 16.575 hybrid contribution 1.049 -0.108 0.802 1.325 sum -7.923 13.684 -1.203 15.858 Atomic orbital electron populations 1.81260 1.12816 1.08771 1.07887 1.28754 0.94750 0.93252 0.93726 1.19787 0.82216 1.05685 1.01404 1.21247 0.75309 1.05966 0.94899 1.46927 1.04879 1.08670 1.70017 1.23385 0.82768 0.92911 0.80417 1.93211 1.82297 0.99140 1.72640 1.47639 1.06914 1.04758 1.63344 1.19844 0.77224 0.90216 0.98759 1.21256 1.11424 1.32281 0.93088 0.92080 1.24864 0.96401 0.94593 0.97479 1.69913 1.21149 1.30897 1.30197 0.86391 0.78806 0.78440 0.83574 1.19614 1.20504 1.20769 1.21187 0.93319 0.85814 0.99881 0.89723 1.30014 1.09768 1.15066 1.14828 1.09592 0.79320 0.78282 0.75891 1.93674 1.81337 1.79645 1.36683 1.93650 1.84359 1.59116 1.54755 1.30554 1.23792 1.04326 1.12361 1.22309 0.90520 0.87222 1.01552 0.87327 0.87335 0.86246 0.86695 0.88689 0.90806 0.93447 0.92243 0.81970 0.82765 0.83121 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.26 18.54 42.16 0.78 -4.48 16 2 C 0.21 1.94 15.43 -20.76 -0.32 1.62 16 3 C -0.05 -0.32 6.03 -29.52 -0.18 -0.49 16 4 C 0.15 1.23 6.02 -4.04 -0.02 1.21 16 5 N -0.59 -6.50 2.93 -167.33 -0.49 -6.99 16 6 C 0.56 9.16 7.40 -84.70 -0.63 8.54 16 7 S -0.61 -12.65 29.19 -107.50 -3.14 -15.79 16 8 N -0.52 -8.72 2.85 -170.75 -0.49 -9.21 16 9 C 0.26 5.57 5.84 -5.19 -0.03 5.54 16 10 C -0.54 -13.15 9.39 -34.44 -0.32 -13.47 16 11 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 12 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 13 N -0.88 -23.62 13.29 55.43 0.74 -22.88 16 14 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.11 1.22 3.04 -69.37 -0.21 1.01 16 19 H 0.09 0.73 7.99 -51.93 -0.42 0.32 16 20 C -0.57 -5.29 7.19 35.71 0.26 -5.03 16 21 S 2.39 18.93 6.14 -107.50 -0.66 18.27 16 22 O -0.92 -10.58 18.16 -57.70 -1.05 -11.62 16 23 O -0.92 -9.70 18.16 -57.70 -1.05 -10.75 16 24 C -0.58 -2.96 7.07 36.73 0.26 -2.70 16 25 C 0.09 0.86 3.33 -67.70 -0.23 0.63 16 26 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.11 0.39 7.39 -51.93 -0.38 0.00 16 28 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 1.18 7.48 -51.93 -0.39 0.79 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.86 7.39 -51.93 -0.38 1.47 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.16 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.15 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.15 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.15 0.39 7.39 -51.93 -0.38 0.00 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -36.79 347.05 -11.12 -47.91 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.46 Total: -3.19 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -1.52 Total: -1.44 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.54 Total: -43.56 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -2.10 Total: -22.37 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -3.80 Total: 2.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.79 -11.12 -47.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005010641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.587 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds