Wall clock time and date at job start Tue Mar 31 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46973 * 300.86281 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.36860 * 127.50917 * 90.02355 * 5 4 3 7 7 S 1.71194 * 123.69172 * 13.60133 * 6 5 4 8 8 N 1.36698 * 112.61686 * 193.56678 * 6 5 4 9 9 C 1.46494 * 127.28226 * 194.47445 * 8 6 5 10 10 C 1.50704 * 109.46984 * 89.97657 * 9 8 6 11 11 H 1.07998 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99803 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00171 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99812 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47354 * 90.00459 * 14 12 10 16 16 H 1.48501 * 109.47097 * 210.00669 * 14 12 10 17 17 H 1.48506 * 109.47062 * 330.00199 * 14 12 10 18 18 C 1.44509 * 105.42948 * 14.45458 * 8 6 5 19 19 H 1.08995 * 110.07141 * 81.73153 * 18 8 6 20 20 C 1.52154 * 122.79391 * 213.81542 * 18 8 6 21 21 S 1.84701 * 100.70216 * 158.33041 * 20 18 8 22 22 O 1.42099 * 109.43113 * 88.66146 * 21 20 18 23 23 O 1.42108 * 109.43105 * 222.08481 * 21 20 18 24 24 C 1.84385 * 96.51300 * 335.37038 * 21 20 18 25 25 C 1.43262 * 127.50750 * 269.70422 * 5 4 3 26 26 H 1.09000 * 107.18344 * 257.36577 * 25 5 4 27 27 H 1.09002 * 109.47120 * 180.86036 * 3 2 1 28 28 H 1.09001 * 109.46952 * 60.86174 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99745 * 4 3 2 30 30 H 1.08992 * 109.47399 * 59.99917 * 4 3 2 31 31 H 1.08997 * 109.47032 * 209.97588 * 9 8 6 32 32 H 1.08997 * 109.47615 * 329.97626 * 9 8 6 33 33 H 0.97003 * 120.00358 * 179.97438 * 13 12 10 34 34 H 1.09001 * 111.16908 * 276.18869 * 20 18 8 35 35 H 1.08994 * 111.17493 * 40.42569 * 20 18 8 36 36 H 1.09004 * 110.70515 * 111.85505 * 24 21 20 37 37 H 1.08998 * 110.71240 * 234.92555 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7391 1.2383 5 7 4.5833 -0.7379 1.2385 6 6 5.4157 0.1944 1.7961 7 16 4.8945 1.3918 2.9031 8 7 6.7090 0.0644 1.3730 9 6 7.9017 0.6765 1.9637 10 6 8.4728 -0.2447 3.0108 11 1 7.9949 -1.1911 3.2161 12 6 9.6056 0.1210 3.7068 13 7 10.1873 1.2737 3.4572 14 14 10.3130 -1.0205 5.0053 15 1 11.2972 -1.9370 4.3755 16 1 10.9871 -0.2169 6.0565 17 1 9.2171 -1.8149 5.6161 18 6 6.6508 -0.8050 0.2201 19 1 6.3737 -0.2335 -0.6657 20 6 7.7539 -1.7957 -0.1215 21 16 6.8274 -2.9868 -1.1866 22 8 6.8788 -2.5511 -2.5382 23 8 7.2075 -4.3146 -0.8522 24 6 5.1567 -2.6334 -0.4912 25 6 5.4565 -1.7156 0.6606 26 1 5.8336 -2.3327 1.4761 27 1 2.9709 1.0284 0.0154 28 1 2.9715 -0.4996 -0.8976 29 1 2.7547 -0.2389 2.1359 30 1 2.7554 -1.7667 1.2228 31 1 8.6456 0.8475 1.1855 32 1 7.6323 1.6270 2.4239 33 1 10.9840 1.5311 3.9471 34 1 8.5579 -1.3134 -0.6775 35 1 8.1364 -2.2836 0.7750 36 1 4.5288 -2.1363 -1.2306 37 1 4.6836 -3.5502 -0.1396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005010649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:32 Heat of formation + Delta-G solvation = 26.021277 kcal Electronic energy + Delta-G solvation = -24163.142014 eV Core-core repulsion = 20582.114811 eV Total energy + Delta-G solvation = -3581.027203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -41.68013 -37.44569 -37.28229 -36.41303 -35.57152 -34.54842 -33.00301 -31.76145 -29.81140 -27.94264 -25.44731 -25.03835 -23.19605 -21.55742 -20.55116 -19.24254 -18.49494 -17.76275 -17.21982 -16.84828 -16.64148 -16.42741 -16.01714 -15.43830 -15.05493 -14.95327 -14.76027 -14.54381 -14.18192 -13.94980 -13.07625 -12.98717 -12.90630 -12.80470 -12.51878 -12.42566 -12.33098 -12.06645 -11.99731 -11.61995 -11.59119 -11.43941 -11.32914 -11.01117 -10.94200 -10.88709 -10.62387 -10.34368 -9.83400 -8.69584 -8.42292 -7.35568 -7.05551 -6.30828 -4.39428 -0.48575 1.48313 1.85289 2.04924 2.48314 2.51659 2.88355 3.11160 3.15773 3.19714 3.25157 3.28585 3.52401 3.69171 3.76692 4.02482 4.17068 4.27593 4.34339 4.45052 4.50591 4.59269 4.86725 5.00114 5.03816 5.09778 5.17864 5.27594 5.51066 5.60810 5.76640 6.50680 6.53122 6.99524 7.26702 7.34860 7.43494 7.64121 7.81945 8.61237 9.27140 10.76423 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.005480 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.777428 B = 5108.615469 C = 7249.938728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.214 3.786 3 C -0.049 4.049 4 C 0.149 3.851 5 N -0.582 5.582 6 C 0.557 3.443 7 S -0.601 6.601 8 N -0.527 5.527 9 C 0.261 3.739 10 C -0.541 4.541 11 H 0.060 0.940 12 C 0.071 3.929 13 N -0.884 5.884 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.098 3.902 19 H 0.102 0.898 20 C -0.562 4.562 21 S 2.386 3.614 22 O -0.921 6.921 23 O -0.920 6.920 24 C -0.580 4.580 25 C 0.098 3.902 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -8.350 -10.983 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.105 4.105 3 C -0.091 4.091 4 C 0.025 3.975 5 N -0.300 5.300 6 C 0.206 3.794 7 S -0.468 6.468 8 N -0.235 5.235 9 C 0.145 3.855 10 C -0.580 4.580 11 H 0.078 0.922 12 C -0.133 4.133 13 N -0.522 5.522 14 Si 0.727 3.273 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.012 4.012 19 H 0.119 0.881 20 C -0.692 4.692 21 S 2.566 3.434 22 O -0.918 6.918 23 O -0.917 6.917 24 C -0.708 4.708 25 C -0.012 4.012 26 H 0.113 0.887 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.032 -8.127 -10.977 16.374 hybrid contribution 1.002 -0.675 0.748 1.421 sum -8.030 -8.802 -10.229 15.703 Atomic orbital electron populations 1.81257 1.12816 1.08591 1.08058 1.28749 0.94747 0.93387 0.93601 1.19786 0.82226 1.05789 1.01328 1.21265 0.75272 1.02096 0.98853 1.46662 1.04833 1.21482 1.57000 1.23755 0.82803 0.87091 0.85800 1.93200 1.82371 1.33905 1.37360 1.48265 1.06192 1.44136 1.24929 1.19788 0.76756 0.95315 0.93681 1.21223 1.11198 1.04486 1.21110 0.92184 1.24863 0.96351 0.95328 0.96796 1.69900 1.20405 1.20480 1.41369 0.86454 0.79176 0.80424 0.81221 1.20446 1.20783 1.19679 1.22261 0.93223 0.92375 0.93373 0.88075 1.30411 1.09168 1.12453 1.17144 1.09677 0.79245 0.77265 0.77190 1.93658 1.84825 1.83075 1.30230 1.93660 1.79969 1.32899 1.85129 1.30142 1.24203 1.08578 1.07865 1.21443 0.90211 0.92397 0.97129 0.88744 0.86183 0.87313 0.86685 0.88643 0.93430 0.91015 0.92185 0.82802 0.82163 0.83520 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 218. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.26 18.54 42.15 0.78 -4.48 16 2 C 0.21 1.94 15.43 -20.76 -0.32 1.62 16 3 C -0.05 -0.32 6.03 -29.52 -0.18 -0.50 16 4 C 0.15 1.22 6.08 -4.04 -0.02 1.19 16 5 N -0.58 -6.43 2.93 -168.59 -0.49 -6.92 16 6 C 0.56 9.11 7.44 -83.26 -0.62 8.49 16 7 S -0.60 -12.49 29.32 -107.50 -3.15 -15.64 16 8 N -0.53 -8.81 2.92 -168.03 -0.49 -9.30 16 9 C 0.26 5.65 5.79 -5.19 -0.03 5.62 16 10 C -0.54 -13.00 9.39 -34.44 -0.32 -13.33 16 11 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 13 N -0.88 -23.55 13.29 55.43 0.74 -22.81 16 14 Si 0.90 19.81 29.54 -169.99 -5.02 14.78 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.10 1.11 3.35 -67.53 -0.23 0.88 16 19 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 20 C -0.56 -5.42 7.04 36.73 0.26 -5.16 16 21 S 2.39 19.11 6.14 -107.50 -0.66 18.45 16 22 O -0.92 -9.83 18.16 -57.70 -1.05 -10.88 16 23 O -0.92 -10.52 18.16 -57.70 -1.05 -11.57 16 24 C -0.58 -3.02 7.18 35.81 0.26 -2.76 16 25 C 0.10 0.90 3.02 -69.10 -0.21 0.69 16 26 H 0.09 0.93 7.99 -51.93 -0.42 0.52 16 27 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.11 0.40 7.70 -51.93 -0.40 0.00 16 29 H 0.12 1.17 7.51 -51.93 -0.39 0.78 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.80 7.48 -51.93 -0.39 1.41 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.15 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.16 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.15 0.41 7.70 -51.93 -0.40 0.01 16 37 H 0.15 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -36.48 348.02 -11.16 -47.64 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.50 Total: -2.97 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.55 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.53 Total: -43.51 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -2.10 Total: -22.45 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -3.81 Total: 2.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.48 -11.16 -47.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005010649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.659 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds