Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35695 * 117.00311 * 2 1 4 4 C 1.39047 * 119.90235 * 0.02892 * 3 2 1 5 5 C 1.37652 * 120.09493 * 179.97438 * 4 3 2 6 6 C 1.39838 * 119.90448 * 359.97438 * 5 4 3 7 7 C 1.47418 * 120.09901 * 179.97438 * 6 5 4 8 8 O 1.21532 * 120.00209 * 180.02562 * 7 6 5 9 9 O 1.34772 * 119.99607 * 0.02562 * 7 6 5 10 10 C 1.34864 * 117.00117 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99494 * 359.97438 * 10 9 7 12 12 C 1.38789 * 120.00257 * 180.02562 * 10 9 7 13 13 N 1.31422 * 120.00239 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99884 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47146 * 90.00438 * 14 12 10 16 16 H 1.48496 * 109.47204 * 209.99914 * 14 12 10 17 17 H 1.48501 * 109.47296 * 330.00398 * 14 12 10 18 18 C 1.39810 * 119.80904 * 359.73149 * 6 5 4 19 19 C 1.37686 * 119.90201 * 0.52041 * 18 6 5 20 20 S 1.76204 * 119.95551 * 179.77320 * 19 18 6 21 21 O 1.42105 * 106.39972 * 1.18504 * 20 19 18 22 22 O 1.42098 * 106.40426 * 228.26676 * 20 19 18 23 23 N 1.65595 * 107.21987 * 114.72388 * 20 19 18 24 24 C 1.46498 * 119.99850 * 89.99964 * 23 20 19 25 25 C 1.46498 * 120.00275 * 270.00253 * 23 20 19 26 26 H 1.09006 * 109.46905 * 299.99410 * 1 2 3 27 27 H 1.09004 * 109.47131 * 59.99687 * 1 2 3 28 28 H 1.08999 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.94989 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.04682 * 180.02562 * 5 4 3 31 31 H 0.97003 * 120.00047 * 179.97438 * 13 12 10 32 32 H 1.08007 * 120.05204 * 180.30038 * 18 6 5 33 33 H 1.09003 * 109.47325 * 90.00198 * 24 23 20 34 34 H 1.09004 * 109.47539 * 209.99910 * 24 23 20 35 35 H 1.08996 * 109.47424 * 330.00527 * 24 23 20 36 36 H 1.08997 * 109.46884 * 0.02562 * 25 23 20 37 37 H 1.09009 * 109.47099 * 119.99678 * 25 23 20 38 38 H 1.08999 * 109.47420 * 239.99911 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2859 2.3739 0.0006 5 6 1.9068 3.6025 0.0011 6 6 3.3031 3.6779 0.0016 7 6 3.9725 4.9914 0.0016 8 8 5.1861 5.0549 0.0016 9 8 3.2385 6.1217 0.0017 10 6 3.9128 7.2896 0.0022 11 1 4.9928 7.2895 0.0030 12 6 3.2189 8.4916 0.0029 13 7 3.8760 9.6298 0.0039 14 14 1.3509 8.4917 0.0023 15 1 0.8554 8.4908 1.4022 16 1 0.8561 9.7046 -0.6970 17 1 0.8560 7.2796 -0.6987 18 6 4.0626 2.5041 0.0072 19 6 3.4334 1.2794 0.0014 20 16 4.3892 -0.2008 0.0024 21 8 5.7517 0.2014 0.0380 22 8 3.8494 -1.0278 -1.0193 23 7 4.0926 -0.9749 1.4360 24 6 2.9958 -1.9411 1.5335 25 6 4.9270 -0.6934 2.6068 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2075 2.3147 0.0015 30 1 1.3163 4.5068 0.0020 31 1 3.3910 10.4698 0.0040 32 1 5.1413 2.5578 0.0125 33 1 3.3644 -2.9358 1.2826 34 1 2.6041 -1.9448 2.5507 35 1 2.2029 -1.6619 0.8397 36 1 5.6841 0.0455 2.3442 37 1 4.3038 -0.3040 3.4120 38 1 5.4136 -1.6117 2.9355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006433418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = -144.616327 kcal Electronic energy + Delta-G solvation = -26479.780387 eV Core-core repulsion = 22416.308159 eV Total energy + Delta-G solvation = -4063.472227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.57674 -39.29965 -37.58216 -37.09620 -36.27077 -35.82078 -35.36590 -32.46558 -31.69848 -30.55375 -28.28711 -27.91297 -25.75221 -24.81878 -23.61430 -22.96244 -20.60697 -19.11494 -18.69135 -18.09122 -17.69829 -17.54428 -16.76655 -16.18796 -16.14690 -15.82072 -15.25359 -14.83404 -14.70348 -14.53407 -14.47169 -14.25052 -13.95935 -13.22746 -13.04694 -12.90536 -12.69910 -12.53801 -12.50808 -12.45256 -12.15502 -12.02914 -11.76710 -11.72675 -11.63473 -11.56392 -11.20806 -10.77305 -10.61021 -10.50022 -9.81099 -9.60512 -9.36708 -9.26909 -8.79623 -8.54163 -6.48670 -4.20234 0.31008 0.70430 0.97923 2.70338 2.73799 2.98613 3.14011 3.15415 3.24577 3.64590 3.90172 3.96239 4.13119 4.30735 4.51641 4.60042 4.71378 4.80516 4.87253 5.03360 5.11229 5.13330 5.19910 5.23334 5.27472 5.40393 5.44574 5.58599 5.60912 5.66645 5.75775 5.95824 6.21896 6.29942 6.34905 6.50958 6.86567 7.61338 7.92956 8.51874 8.88284 9.55090 10.59218 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.003692 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.297437 B = 7581.349677 C = 8507.756339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.311 6.311 3 C 0.231 3.769 4 C -0.234 4.234 5 C 0.014 3.986 6 C -0.140 4.140 7 C 0.447 3.553 8 O -0.531 6.531 9 O -0.244 6.244 10 C -0.374 4.374 11 H 0.113 0.887 12 C 0.066 3.934 13 N -0.866 5.866 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.260 1.260 18 C 0.062 3.938 19 C -0.718 4.718 20 S 2.702 3.298 21 O -0.954 6.954 22 O -0.946 6.946 23 N -1.001 6.001 24 C 0.089 3.911 25 C 0.084 3.916 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.282 0.718 32 H 0.163 0.837 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 -22.687 4.693 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.183 3.817 4 C -0.253 4.253 5 C -0.005 4.005 6 C -0.142 4.142 7 C 0.294 3.706 8 O -0.427 6.427 9 O -0.152 6.152 10 C -0.450 4.450 11 H 0.130 0.870 12 C -0.139 4.139 13 N -0.504 5.504 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.184 1.184 18 C 0.043 3.957 19 C -0.804 4.804 20 S 2.791 3.209 21 O -0.944 6.944 22 O -0.936 6.936 23 N -0.841 5.841 24 C -0.056 4.056 25 C -0.061 4.061 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.092 0.908 32 H 0.180 0.820 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.975 -22.904 4.063 24.933 hybrid contribution -1.617 1.047 0.357 1.959 sum -10.591 -21.856 4.420 24.686 Atomic orbital electron populations 1.23226 0.76951 1.04725 1.02273 1.86004 1.22893 1.26363 1.87064 1.18459 0.90325 0.84787 0.88133 1.21247 1.00482 0.91768 1.11811 1.21652 0.93896 0.98042 0.86896 1.19385 0.93489 0.92019 1.09324 1.20203 0.85835 0.84380 0.80155 1.90708 1.14648 1.87413 1.49979 1.83509 1.40562 1.14474 1.76697 1.20735 0.94239 0.78916 1.51073 0.86952 1.24571 1.00299 0.93449 0.95567 1.69591 1.36958 0.97438 1.46441 0.86226 0.83427 0.78375 0.78960 1.19705 1.20529 1.18441 1.20903 1.01337 0.88414 0.85071 1.30095 1.03865 1.19643 1.26791 1.01817 0.73384 0.73054 0.72637 1.93589 1.31462 1.83351 1.85998 1.93578 1.80239 1.65812 1.53937 1.57279 1.43434 1.54807 1.28560 1.21645 0.88971 0.91681 1.03303 1.21612 0.94631 1.02275 0.87598 0.91862 0.91707 0.87467 0.84050 0.83414 0.90787 0.81957 0.92582 0.91326 0.89398 0.89339 0.92061 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.25 6.36 -28.79 -0.18 -3.43 16 3 C 0.23 3.01 6.65 -39.00 -0.26 2.75 16 4 C -0.23 -2.90 9.01 -39.50 -0.36 -3.26 16 5 C 0.01 0.21 9.61 -39.20 -0.38 -0.16 16 6 C -0.14 -2.65 5.87 -104.97 -0.62 -3.27 16 7 C 0.45 10.82 7.83 34.47 0.27 11.09 16 8 O -0.53 -14.43 15.59 -19.29 -0.30 -14.73 16 9 O -0.24 -6.33 7.81 -21.77 -0.17 -6.50 16 10 C -0.37 -10.95 10.11 30.94 0.31 -10.64 16 11 H 0.11 3.63 7.09 -52.49 -0.37 3.26 16 12 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 13 N -0.87 -25.07 13.96 55.49 0.77 -24.29 16 14 Si 0.90 20.50 28.62 -169.99 -4.86 15.64 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 18 C 0.06 1.08 9.09 -39.20 -0.36 0.72 16 19 C -0.72 -10.69 5.91 -39.50 -0.23 -10.92 16 20 S 2.70 38.25 5.24 -107.50 -0.56 37.69 16 21 O -0.95 -15.72 15.52 -57.17 -0.89 -16.61 16 22 O -0.95 -14.99 16.36 -62.57 -1.02 -16.02 16 23 N -1.00 -10.61 3.58 -129.20 -0.46 -11.07 16 24 C 0.09 0.73 10.21 59.85 0.61 1.34 16 25 C 0.08 0.73 10.67 59.85 0.64 1.37 16 26 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 27 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16 28 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.14 1.23 6.28 -52.49 -0.33 0.90 16 30 H 0.15 2.22 7.60 -52.49 -0.40 1.82 16 31 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.16 2.90 6.91 -52.48 -0.36 2.54 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.09 0.75 4.81 -51.93 -0.25 0.50 16 36 H 0.09 0.86 6.91 -51.93 -0.36 0.50 16 37 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -36.29 338.48 -6.16 -42.45 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.11 Total: -0.12 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 0.53 Total: -8.11 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.31 Total: -35.37 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -2.57 Total: -57.29 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.86 Total: 15.64 kcal Atomic # 16 Polarization: 38.25 SS G_CDS: -0.56 Total: 37.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.29 -6.16 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006433418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.164 kcal (2) G-P(sol) polarization free energy of solvation -36.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds