Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35695 * 117.00311 * 2 1 4 4 C 1.39047 * 119.90235 * 0.02892 * 3 2 1 5 5 C 1.37652 * 120.09493 * 179.97438 * 4 3 2 6 6 C 1.39838 * 119.90448 * 359.97438 * 5 4 3 7 7 C 1.47418 * 120.09901 * 179.97438 * 6 5 4 8 8 O 1.21532 * 120.00209 * 180.02562 * 7 6 5 9 9 O 1.34772 * 119.99607 * 0.02562 * 7 6 5 10 10 C 1.34864 * 117.00117 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99494 * 359.97438 * 10 9 7 12 12 C 1.38789 * 120.00257 * 180.02562 * 10 9 7 13 13 N 1.31422 * 120.00239 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99884 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47146 * 90.00438 * 14 12 10 16 16 H 1.48496 * 109.47204 * 209.99914 * 14 12 10 17 17 H 1.48501 * 109.47296 * 330.00398 * 14 12 10 18 18 C 1.39810 * 119.80904 * 359.73149 * 6 5 4 19 19 C 1.37686 * 119.90201 * 0.52041 * 18 6 5 20 20 S 1.76204 * 119.95551 * 179.77320 * 19 18 6 21 21 O 1.42105 * 106.39972 * 1.18504 * 20 19 18 22 22 O 1.42098 * 106.40426 * 228.26676 * 20 19 18 23 23 N 1.65595 * 107.21987 * 114.72388 * 20 19 18 24 24 C 1.46498 * 119.99850 * 89.99964 * 23 20 19 25 25 C 1.46498 * 120.00275 * 270.00253 * 23 20 19 26 26 H 1.09006 * 109.46905 * 299.99410 * 1 2 3 27 27 H 1.09004 * 109.47131 * 59.99687 * 1 2 3 28 28 H 1.08999 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.94989 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.04682 * 180.02562 * 5 4 3 31 31 H 0.97003 * 120.00047 * 179.97438 * 13 12 10 32 32 H 1.08007 * 120.05204 * 180.30038 * 18 6 5 33 33 H 1.09003 * 109.47325 * 90.00198 * 24 23 20 34 34 H 1.09004 * 109.47539 * 209.99910 * 24 23 20 35 35 H 1.08996 * 109.47424 * 330.00527 * 24 23 20 36 36 H 1.08997 * 109.46884 * 0.02562 * 25 23 20 37 37 H 1.09009 * 109.47099 * 119.99678 * 25 23 20 38 38 H 1.08999 * 109.47420 * 239.99911 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2859 2.3739 0.0006 5 6 1.9068 3.6025 0.0011 6 6 3.3031 3.6779 0.0016 7 6 3.9725 4.9914 0.0016 8 8 5.1861 5.0549 0.0016 9 8 3.2385 6.1217 0.0017 10 6 3.9128 7.2896 0.0022 11 1 4.9928 7.2895 0.0030 12 6 3.2189 8.4916 0.0029 13 7 3.8760 9.6298 0.0039 14 14 1.3509 8.4917 0.0023 15 1 0.8554 8.4908 1.4022 16 1 0.8561 9.7046 -0.6970 17 1 0.8560 7.2796 -0.6987 18 6 4.0626 2.5041 0.0072 19 6 3.4334 1.2794 0.0014 20 16 4.3892 -0.2008 0.0024 21 8 5.7517 0.2014 0.0380 22 8 3.8494 -1.0278 -1.0193 23 7 4.0926 -0.9749 1.4360 24 6 2.9958 -1.9411 1.5335 25 6 4.9270 -0.6934 2.6068 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2075 2.3147 0.0015 30 1 1.3163 4.5068 0.0020 31 1 3.3910 10.4698 0.0040 32 1 5.1413 2.5578 0.0125 33 1 3.3644 -2.9358 1.2826 34 1 2.6041 -1.9448 2.5507 35 1 2.2029 -1.6619 0.8397 36 1 5.6841 0.0455 2.3442 37 1 4.3038 -0.3040 3.4120 38 1 5.4136 -1.6117 2.9355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006433418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = -172.174465 kcal Electronic energy + Delta-G solvation = -26480.975397 eV Core-core repulsion = 22416.308159 eV Total energy + Delta-G solvation = -4064.667238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77427 -40.99593 -38.83088 -38.27411 -37.37467 -37.12118 -36.94521 -34.58073 -32.88743 -31.81210 -28.95328 -28.72394 -27.60998 -25.60394 -24.90667 -24.27628 -22.12349 -20.41381 -20.21483 -19.64893 -19.01465 -18.68432 -17.93085 -17.45575 -17.00218 -16.96171 -16.82226 -16.73659 -16.02345 -15.65507 -15.45901 -15.34374 -15.10447 -14.66573 -14.35454 -14.19993 -13.99886 -13.87557 -13.48780 -13.35380 -13.31431 -13.25624 -13.17148 -12.83998 -12.62917 -12.48533 -12.42848 -12.34512 -12.13888 -11.94447 -11.78153 -11.34502 -10.88177 -10.75233 -10.07796 -9.71799 -8.59490 -6.45962 -0.77308 -0.51372 -0.28571 1.28974 1.31725 1.48265 1.53770 1.85242 1.91056 2.16865 2.26724 2.36238 2.60080 2.90797 3.18710 3.51006 3.69107 3.85565 3.88208 3.97262 4.18261 4.37380 4.44874 4.45851 4.50879 4.61717 4.67723 4.77602 4.81022 4.88674 4.96624 5.04052 5.05025 5.10169 5.24889 5.41391 5.58491 5.82535 5.94924 6.41753 6.74018 7.45387 8.53262 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.003692 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.297437 B = 7581.349677 C = 8507.756339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.311 6.311 3 C 0.253 3.747 4 C -0.215 4.215 5 C 0.020 3.980 6 C -0.176 4.176 7 C 0.451 3.549 8 O -0.575 6.575 9 O -0.242 6.242 10 C -0.411 4.411 11 H 0.055 0.945 12 C 0.016 3.984 13 N -0.913 5.913 14 Si 0.985 3.015 15 H -0.255 1.255 16 H -0.265 1.265 17 H -0.242 1.242 18 C 0.057 3.943 19 C -0.727 4.727 20 S 2.711 3.289 21 O -0.988 6.988 22 O -0.964 6.964 23 N -0.995 5.995 24 C 0.079 3.921 25 C 0.075 3.925 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.193 0.807 30 H 0.158 0.842 31 H 0.292 0.708 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.881 -25.582 5.580 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.222 6.222 3 C 0.203 3.797 4 C -0.234 4.234 5 C 0.001 3.999 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.473 6.473 9 O -0.151 6.151 10 C -0.487 4.487 11 H 0.073 0.927 12 C -0.184 4.184 13 N -0.552 5.552 14 Si 0.803 3.197 15 H -0.179 1.179 16 H -0.190 1.190 17 H -0.165 1.165 18 C 0.037 3.963 19 C -0.813 4.813 20 S 2.800 3.200 21 O -0.978 6.978 22 O -0.954 6.954 23 N -0.837 5.837 24 C -0.065 4.065 25 C -0.069 4.069 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.210 0.790 30 H 0.175 0.825 31 H 0.102 0.898 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.981 -25.826 4.946 29.781 hybrid contribution -0.055 1.605 0.127 1.611 sum -14.036 -24.221 5.073 28.450 Atomic orbital electron populations 1.23780 0.73948 1.07365 1.03941 1.86063 1.25807 1.24640 1.85703 1.18582 0.89684 0.86280 0.85153 1.21663 1.02735 0.89729 1.09233 1.21772 0.91956 1.00030 0.86103 1.19099 0.95310 0.89007 1.14375 1.21364 0.85719 0.85713 0.77139 1.90673 1.16926 1.88210 1.51447 1.83500 1.39748 1.13862 1.77955 1.20371 0.92290 0.81197 1.54827 0.92664 1.25670 1.06910 0.92054 0.93773 1.69695 1.39860 0.98497 1.47111 0.85074 0.74873 0.79581 0.80167 1.17883 1.18973 1.16458 1.20705 1.00549 0.89223 0.85773 1.30126 1.05418 1.18547 1.27185 1.01362 0.72593 0.72720 0.73348 1.93546 1.33607 1.83848 1.86783 1.93543 1.80338 1.66003 1.55513 1.57075 1.44442 1.54417 1.27721 1.21935 0.88126 0.91235 1.05179 1.21837 0.94688 1.03156 0.87252 0.89535 0.90571 0.84655 0.79031 0.82456 0.89810 0.84099 0.91679 0.88341 0.89493 0.91128 0.89914 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.13 16 2 O -0.31 -5.04 6.36 -80.58 -0.51 -5.55 16 3 C 0.25 5.69 6.65 22.65 0.15 5.84 16 4 C -0.21 -4.35 9.01 22.33 0.20 -4.15 16 5 C 0.02 0.57 9.61 22.52 0.22 0.79 16 6 C -0.18 -6.79 5.87 -20.09 -0.12 -6.91 16 7 C 0.45 23.17 7.83 70.24 0.55 23.72 16 8 O -0.57 -34.05 15.59 19.73 0.31 -33.74 16 9 O -0.24 -13.05 7.81 10.84 0.08 -12.96 16 10 C -0.41 -25.64 10.11 67.95 0.69 -24.95 16 11 H 0.06 3.96 7.09 -2.91 -0.02 3.94 16 12 C 0.02 0.95 5.49 84.89 0.47 1.41 16 13 N -0.91 -54.98 13.96 21.63 0.30 -54.68 16 14 Si 0.98 41.67 28.62 68.60 1.96 43.63 16 15 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.24 -9.40 7.11 99.48 0.71 -8.69 16 18 C 0.06 2.06 9.09 22.52 0.20 2.26 16 19 C -0.73 -20.99 5.91 22.32 0.13 -20.85 16 20 S 2.71 75.37 5.24 -56.49 -0.30 75.07 16 21 O -0.99 -33.91 15.52 -128.00 -1.99 -35.89 16 22 O -0.96 -29.45 16.36 -122.84 -2.01 -31.46 16 23 N -0.99 -18.94 3.58 -562.69 -2.02 -20.96 16 24 C 0.08 1.00 10.21 127.77 1.30 2.30 16 25 C 0.08 1.18 10.67 127.77 1.36 2.54 16 26 H 0.09 0.20 7.65 -2.38 -0.02 0.18 16 27 H 0.08 0.36 7.65 -2.39 -0.02 0.35 16 28 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.19 1.96 6.28 -2.91 -0.02 1.94 16 30 H 0.16 4.24 7.60 -2.91 -0.02 4.22 16 31 H 0.29 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.14 5.55 6.91 -2.91 -0.02 5.53 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.68 8.07 -2.39 -0.02 0.66 16 35 H 0.09 1.12 4.81 -2.39 -0.01 1.11 16 36 H 0.07 1.38 6.91 -2.39 -0.02 1.36 16 37 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -87.50 338.48 3.21 -84.29 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.11 Total: 9.11 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 6.27 Total: -16.87 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.71 Total: -75.64 kcal Atomic # 8 Polarization: -115.48 SS G_CDS: -4.12 Total: -119.60 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.96 Total: 43.63 kcal Atomic # 16 Polarization: 75.37 SS G_CDS: -0.30 Total: 75.07 kcal Total: -87.50 3.21 -84.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006433418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.887 kcal (2) G-P(sol) polarization free energy of solvation -87.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds