Wall clock time and date at job start Tue Mar 31 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 S 1.76200 * 119.94412 * 179.70694 * 7 6 5 9 9 O 1.42092 * 106.40256 * 23.51551 * 8 7 6 10 10 O 1.42109 * 106.40314 * 156.43690 * 8 7 6 11 11 N 1.65603 * 107.21457 * 269.97372 * 8 7 6 12 12 C 1.46503 * 119.99830 * 65.00294 * 11 8 7 13 13 C 1.50700 * 109.46882 * 164.99604 * 12 11 8 14 14 O 1.21211 * 120.00444 * 0.02562 * 13 12 11 15 15 O 1.34308 * 119.99797 * 179.97438 * 13 12 11 16 16 C 1.34927 * 117.00071 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99651 * 359.97438 * 16 15 13 18 18 C 1.38757 * 119.99771 * 180.02562 * 16 15 13 19 19 N 1.31442 * 119.99510 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00399 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47371 * 90.00091 * 20 18 16 22 22 H 1.48498 * 109.47367 * 210.00459 * 20 18 16 23 23 H 1.48503 * 109.47045 * 330.00175 * 20 18 16 24 24 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 25 25 C 1.38145 * 120.05942 * 0.02720 * 24 7 6 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 28 28 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 32 32 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 33 33 H 0.96999 * 120.00241 * 244.99873 * 11 8 7 34 34 H 1.09001 * 109.46946 * 284.99773 * 12 11 8 35 35 H 1.08995 * 109.46999 * 45.00027 * 12 11 8 36 36 H 0.97003 * 119.99691 * 179.97438 * 19 18 16 37 37 H 1.08008 * 119.97547 * 180.02562 * 24 7 6 38 38 H 1.08000 * 120.03441 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 16 7.8429 2.1190 0.0022 9 8 8.4047 0.9326 -0.5417 10 8 8.0771 3.4105 -0.5423 11 7 8.3282 2.1836 1.5843 12 6 8.1858 1.0050 2.4428 13 6 9.0144 1.1878 3.6882 14 8 9.6596 2.2021 3.8435 15 8 9.0372 0.2271 4.6265 16 6 9.7988 0.4539 5.7170 17 1 10.3549 1.3754 5.8050 18 6 9.8680 -0.4973 6.7248 19 7 10.6103 -0.2765 7.7869 20 14 8.9066 -2.0915 6.5723 21 1 9.7444 -3.1119 5.8925 22 1 8.5356 -2.5773 7.9256 23 1 7.6751 -1.8528 5.7774 24 6 5.2549 2.9853 0.0010 25 6 3.8850 2.8070 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7884 -0.5724 0.0117 32 1 6.2281 -0.2456 0.0015 33 1 8.7068 3.0017 1.9425 34 1 7.1385 0.8806 2.7182 35 1 8.5278 0.1206 1.9054 36 1 10.6585 -0.9413 8.4916 37 1 5.6690 3.9828 0.0010 38 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007536518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:03 Heat of formation + Delta-G solvation = -160.549132 kcal Electronic energy + Delta-G solvation = -25284.606306 eV Core-core repulsion = 21220.443181 eV Total energy + Delta-G solvation = -4064.163126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61025 -39.37868 -37.98891 -37.28263 -36.01509 -35.88408 -34.27056 -32.56008 -32.39102 -31.40332 -30.14180 -27.77065 -24.96425 -24.65960 -23.31196 -22.22855 -20.32962 -19.65398 -18.88382 -18.13429 -18.11644 -17.50662 -16.64322 -16.58906 -16.25401 -16.04032 -15.41227 -15.13912 -14.88951 -14.47566 -14.25627 -13.94795 -13.92719 -13.56812 -13.48425 -13.20453 -12.95931 -12.63960 -12.57164 -12.28021 -12.22055 -12.12984 -12.03342 -11.87005 -11.35334 -11.30706 -11.30093 -11.06811 -10.58706 -10.47003 -9.79477 -9.66992 -9.47605 -9.33912 -8.96741 -8.76013 -6.44386 -4.21225 0.27604 0.62188 0.92485 2.61554 2.83580 3.02791 3.17780 3.22415 3.26724 3.32104 3.72351 3.95649 4.17407 4.18864 4.34169 4.40598 4.42977 4.58436 4.71882 4.86176 4.91839 5.01713 5.07558 5.19914 5.23242 5.27566 5.46650 5.49650 5.55663 5.56199 5.61120 5.77940 5.82925 6.25360 6.26298 6.86073 7.02364 7.62067 7.95533 8.48696 8.92290 9.54091 10.63644 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.003437 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.270352 B = 8144.775436 C =10007.647672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.311 6.311 4 C 0.184 3.816 5 C -0.230 4.230 6 C 0.021 3.979 7 C -0.716 4.716 8 S 2.706 3.294 9 O -0.957 6.957 10 O -0.957 6.957 11 N -1.104 6.104 12 C 0.133 3.867 13 C 0.406 3.594 14 O -0.532 6.532 15 O -0.246 6.246 16 C -0.384 4.384 17 H 0.111 0.889 18 C 0.067 3.933 19 N -0.871 5.871 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C 0.022 3.978 25 C -0.174 4.174 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.429 0.571 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.281 0.719 37 H 0.149 0.851 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 -0.482 -16.852 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.224 6.224 4 C 0.137 3.863 5 C -0.250 4.250 6 C 0.002 3.998 7 C -0.803 4.803 8 S 2.795 3.205 9 O -0.947 6.947 10 O -0.947 6.947 11 N -0.869 5.869 12 C 0.005 3.995 13 C 0.250 3.750 14 O -0.427 6.427 15 O -0.154 6.154 16 C -0.459 4.459 17 H 0.129 0.871 18 C -0.137 4.137 19 N -0.509 5.509 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.183 1.183 24 C 0.003 3.997 25 C -0.193 4.193 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.268 0.732 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.097 -0.285 -17.361 25.811 hybrid contribution -0.844 -0.713 0.681 1.298 sum -19.941 -0.998 -16.680 26.017 Atomic orbital electron populations 1.21789 0.92336 1.03162 1.03684 1.22933 0.96252 0.81366 1.02014 1.86112 1.18831 1.30186 1.87277 1.19304 0.82363 0.94412 0.90243 1.21372 0.94293 0.98540 1.10785 1.20790 0.95145 0.95596 0.88254 1.30874 1.26897 0.99878 1.22658 1.01495 0.73514 0.73598 0.71878 1.93585 1.75738 1.49116 1.76219 1.93593 1.84956 1.40281 1.75873 1.55289 1.78835 1.22139 1.30608 1.20428 1.00331 0.88648 0.90054 1.22554 0.83733 0.83303 0.85420 1.90598 1.43943 1.29765 1.78350 1.83480 1.60747 1.42970 1.28181 1.20661 1.24683 1.07385 0.93176 0.87100 1.24560 0.96401 0.98890 0.93884 1.69604 1.37453 1.36101 1.07787 0.86214 0.80945 0.81992 0.77770 1.19684 1.20706 1.18348 1.20761 0.92200 0.98165 0.88558 1.20557 0.95300 0.95132 1.08341 0.91323 0.91431 0.90073 0.91533 0.91362 0.84429 0.83588 0.73183 0.88621 0.87114 0.90889 0.83355 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.05 0.30 5.46 37.16 0.20 0.50 16 3 O -0.31 -2.83 10.14 -19.41 -0.20 -3.03 16 4 C 0.18 1.82 6.69 -39.21 -0.26 1.56 16 5 C -0.23 -2.14 9.04 -39.43 -0.36 -2.50 16 6 C 0.02 0.22 9.51 -39.61 -0.38 -0.16 16 7 C -0.72 -8.08 5.95 -39.56 -0.24 -8.32 16 8 S 2.71 35.59 5.74 -107.50 -0.62 34.97 16 9 O -0.96 -14.60 16.75 -57.17 -0.96 -15.55 16 10 O -0.96 -14.44 17.28 -57.17 -0.99 -15.43 16 11 N -1.10 -15.70 5.93 -11.66 -0.07 -15.77 16 12 C 0.13 2.04 6.81 -5.19 -0.04 2.01 16 13 C 0.41 8.92 7.97 36.01 0.29 9.21 16 14 O -0.53 -13.24 14.97 -19.05 -0.29 -13.52 16 15 O -0.25 -6.16 8.58 -20.71 -0.18 -6.34 16 16 C -0.38 -11.05 10.10 30.92 0.31 -10.73 16 17 H 0.11 3.53 7.09 -52.49 -0.37 3.16 16 18 C 0.07 1.87 5.49 -17.53 -0.10 1.77 16 19 N -0.87 -25.22 13.96 55.48 0.77 -24.45 16 20 Si 0.91 20.58 28.62 -169.99 -4.86 15.72 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 24 C 0.02 0.23 9.51 -39.61 -0.38 -0.14 16 25 C -0.17 -1.71 9.99 -39.43 -0.39 -2.10 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.33 7.68 -51.93 -0.40 -0.06 16 30 H 0.07 0.37 7.65 -51.93 -0.40 -0.03 16 31 H 0.14 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.15 1.29 7.61 -52.49 -0.40 0.89 16 33 H 0.43 6.32 7.70 -34.48 -0.27 6.05 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.11 1.49 7.75 -51.93 -0.40 1.09 16 36 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.15 1.32 7.61 -52.48 -0.40 0.92 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -36.02 348.41 -7.29 -43.31 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.21 Total: 4.05 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.95 Total: -9.21 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.71 Total: -40.22 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -2.60 Total: -53.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.86 Total: 15.72 kcal Atomic # 16 Polarization: 35.59 SS G_CDS: -0.62 Total: 34.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.02 -7.29 -43.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007536518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.236 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds