Wall clock time and date at job start Tue Mar 31 2020 04:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48496 * 109.46922 * 240.00056 * 3 2 1 5 5 H 1.48502 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46898 * 119.99718 * 3 2 1 7 7 C 1.38879 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00215 * 196.99250 * 7 2 1 9 9 N 1.37128 * 120.00246 * 16.99746 * 7 2 1 10 10 C 1.34624 * 123.89947 * 36.50997 * 9 7 2 11 11 O 1.21272 * 126.59976 * 0.02562 * 10 9 7 12 12 C 1.50667 * 106.80154 * 180.02562 * 10 9 7 13 13 O 1.42919 * 111.32001 * 239.33812 * 12 10 9 14 14 C 1.44082 * 106.86491 * 262.34321 * 13 12 10 15 15 C 1.54505 * 105.15806 * 359.05865 * 14 13 12 16 16 O 1.43540 * 110.93305 * 119.89152 * 12 10 9 17 17 C 1.50449 * 104.80181 * 359.94241 * 12 10 9 18 18 C 1.39195 * 105.97034 * 0.06164 * 17 12 10 19 19 C 1.39477 * 118.94761 * 179.97438 * 18 17 12 20 20 Cl 1.73599 * 119.90911 * 180.02562 * 19 18 17 21 21 C 1.38060 * 120.17683 * 359.97438 * 19 18 17 22 22 C 1.38255 * 120.34919 * 0.03031 * 21 19 18 23 23 C 1.37746 * 133.36093 * 180.02562 * 17 12 10 24 24 Cl 1.73599 * 120.00082 * 359.97438 * 23 17 12 25 25 H 0.96999 * 120.00066 * 0.02562 * 1 2 3 26 26 H 1.08998 * 110.32336 * 118.00783 * 14 13 12 27 27 H 1.08998 * 110.32517 * 240.11202 * 14 13 12 28 28 H 1.09004 * 110.70644 * 96.74326 * 15 14 13 29 29 H 1.09002 * 110.71026 * 219.97604 * 15 14 13 30 30 H 1.08005 * 119.82069 * 180.02562 * 21 19 18 31 31 H 1.08005 * 120.07037 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0087 -1.2027 0.0005 8 1 3.0534 -1.2230 0.2739 9 7 1.3681 -2.3645 -0.3461 10 6 0.4247 -2.4450 -1.3032 11 8 0.0080 -1.5337 -1.9861 12 6 -0.0136 -3.8853 -1.3626 13 8 0.2081 -4.4429 -2.6597 14 6 -1.0457 -4.3702 -3.3659 15 6 -2.0384 -3.7413 -2.3628 16 8 -1.4154 -4.0069 -1.0789 17 6 0.8125 -4.5820 -0.3158 18 6 1.6186 -3.5997 0.2522 19 6 2.5040 -3.9575 1.2688 20 17 3.5206 -2.7523 1.9953 21 6 2.5733 -5.2674 1.6995 22 6 1.7675 -6.2344 1.1276 23 6 0.8854 -5.8877 0.1169 24 17 -0.1293 -7.0986 -0.6026 25 1 -0.4850 0.8400 -0.0004 26 1 -0.9472 -3.7376 -4.2480 27 1 -1.3777 -5.3682 -3.6517 28 1 -2.1295 -2.6683 -2.5319 29 1 -3.0121 -4.2268 -2.4282 30 1 3.2606 -5.5380 2.4874 31 1 1.8257 -7.2578 1.4677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008047256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:22 Heat of formation + Delta-G solvation = -67.851278 kcal Electronic energy + Delta-G solvation = -24568.879235 eV Core-core repulsion = 20675.735059 eV Total energy + Delta-G solvation = -3893.144176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.005 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40537 -39.10752 -37.69367 -36.26419 -35.70719 -34.96024 -34.72950 -32.90715 -31.04136 -29.19744 -28.80567 -26.70525 -24.57415 -22.90468 -21.98431 -21.44698 -20.57130 -17.94527 -17.31444 -16.79501 -16.40997 -15.68567 -15.33939 -15.08010 -14.92835 -14.64417 -14.15482 -13.86363 -13.76963 -13.38892 -12.97891 -12.89188 -12.29788 -12.22454 -11.93290 -11.76165 -11.55684 -11.52099 -11.25964 -11.11900 -10.72185 -10.68130 -10.61289 -10.46088 -10.14770 -9.89690 -9.57252 -8.88507 -8.48675 -8.29263 -7.25981 -6.53290 -4.27917 1.27408 1.44542 2.37373 2.79512 3.06687 3.16431 3.18480 3.19764 3.72846 4.02608 4.14611 4.29527 4.37653 4.73114 4.81567 4.91103 5.08540 5.18809 5.24328 5.46591 5.55188 5.72347 5.77738 5.81486 5.97342 6.11226 6.23183 6.40760 6.49264 6.80904 7.22926 7.28990 7.61969 8.21912 8.51286 8.96389 9.45958 10.52405 Molecular weight = 329.01amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.007390 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.920562 B = 3788.219816 C = 5624.736316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.060 3.940 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.363 4.363 8 H 0.113 0.887 9 N -0.363 5.363 10 C 0.488 3.512 11 O -0.450 6.450 12 C 0.285 3.715 13 O -0.349 6.349 14 C 0.023 3.977 15 C 0.012 3.988 16 O -0.336 6.336 17 C -0.174 4.174 18 C 0.211 3.789 19 C -0.080 4.080 20 Cl -0.057 7.057 21 C -0.044 4.044 22 C -0.180 4.180 23 C 0.066 3.934 24 Cl -0.068 7.068 25 H 0.276 0.724 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -10.249 -0.201 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.153 4.153 3 Si 0.752 3.248 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.130 0.870 9 N -0.068 5.068 10 C 0.274 3.726 11 O -0.322 6.322 12 C 0.204 3.796 13 O -0.269 6.269 14 C -0.053 4.053 15 C -0.065 4.065 16 O -0.256 6.256 17 C -0.179 4.179 18 C 0.104 3.896 19 C -0.111 4.111 20 Cl -0.028 7.028 21 C -0.064 4.064 22 C -0.202 4.202 23 C 0.039 3.961 24 Cl -0.039 7.039 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.070 -9.491 -0.551 9.507 hybrid contribution 0.101 0.936 -0.018 0.941 sum 0.171 -8.555 -0.569 8.576 Atomic orbital electron populations 1.69913 1.06508 1.28890 1.39774 1.25424 0.95222 1.00229 0.94390 0.85998 0.79265 0.80194 0.79314 1.19309 1.20535 1.19383 1.19710 0.95660 0.82037 1.51438 0.87003 1.41605 1.33152 1.05125 1.26900 1.20299 0.82234 0.88735 0.81311 1.90569 1.55384 1.43419 1.42792 1.21971 0.82834 0.91867 0.82962 1.88877 1.31370 1.82126 1.24547 1.24000 0.83588 1.01553 0.96197 1.24423 0.97695 1.02462 0.81873 1.89470 1.15695 1.90831 1.29557 1.18841 1.03382 0.92478 1.03242 1.18335 0.92716 0.87729 0.90802 1.19976 1.00478 0.90760 0.99845 1.98332 1.66522 1.56051 1.81903 1.20638 0.97774 0.89592 0.98408 1.20524 0.99802 1.00198 0.99632 1.19910 0.93643 0.87519 0.95056 1.98336 1.67753 1.54899 1.82913 0.91394 0.89636 0.89960 0.89339 0.87627 0.84136 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.21 11.27 55.49 0.63 -22.59 16 2 C 0.06 1.61 4.84 -17.49 -0.08 1.53 16 3 Si 0.93 20.63 29.59 -169.99 -5.03 15.60 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.36 -9.62 8.53 -14.95 -0.13 -9.74 16 8 H 0.11 2.81 5.92 -52.49 -0.31 2.50 16 9 N -0.36 -9.47 2.79 -58.91 -0.16 -9.63 16 10 C 0.49 12.79 6.68 -11.07 -0.07 12.72 16 11 O -0.45 -12.65 14.45 5.56 0.08 -12.57 16 12 C 0.29 6.38 1.31 -29.17 -0.04 6.34 16 13 O -0.35 -7.13 11.00 -59.37 -0.65 -7.78 16 14 C 0.02 0.37 8.08 37.95 0.31 0.67 16 15 C 0.01 0.20 7.44 37.95 0.28 0.48 16 16 O -0.34 -7.17 11.26 -59.35 -0.67 -7.84 16 17 C -0.17 -3.71 5.62 -104.57 -0.59 -4.30 16 18 C 0.21 4.80 6.64 -83.55 -0.55 4.25 16 19 C -0.08 -1.54 6.34 -39.19 -0.25 -1.79 16 20 Cl -0.06 -1.07 25.79 -51.86 -1.34 -2.41 16 21 C -0.04 -0.68 9.79 -39.64 -0.39 -1.07 16 22 C -0.18 -2.72 9.85 -39.46 -0.39 -3.10 16 23 C 0.07 1.19 6.31 -39.64 -0.25 0.94 16 24 Cl -0.07 -1.07 28.85 -51.86 -1.50 -2.57 16 25 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 1.63 7.32 -51.93 -0.38 1.25 16 29 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -31.15 299.85 -8.22 -39.36 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -1.94 Total: -1.00 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -2.15 Total: 6.91 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.46 Total: -32.22 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.24 Total: -28.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -2.83 Total: -4.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.15 -8.22 -39.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008047256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.488 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds