Wall clock time and date at job start Tue Mar 31 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14901 * 300.31357 * 3 2 1 5 5 C 1.37948 * 119.84641 * 180.02562 * 4 3 2 6 6 C 1.38358 * 120.15218 * 0.02562 * 5 4 3 7 7 S 1.76207 * 119.85209 * 179.97438 * 6 5 4 8 8 O 1.42105 * 106.39836 * 336.46212 * 7 6 5 9 9 O 1.42094 * 106.40219 * 203.54227 * 7 6 5 10 10 O 1.52202 * 107.21963 * 89.99683 * 7 6 5 11 11 C 1.35681 * 113.99459 * 75.00228 * 10 7 6 12 12 C 1.39310 * 119.81715 * 269.72320 * 11 10 7 13 13 C 1.36435 * 120.18248 * 179.71645 * 12 11 10 14 14 C 1.40837 * 119.81135 * 0.56182 * 13 12 11 15 15 C 1.41217 * 120.17878 * 179.69378 * 14 13 12 16 16 H 1.07996 * 119.99831 * 204.56463 * 15 14 13 17 17 C 1.39886 * 119.99987 * 24.56851 * 15 14 13 18 18 N 1.30878 * 120.00347 * 17.91925 * 17 15 14 19 19 Si 1.86804 * 119.99872 * 197.92492 * 17 15 14 20 20 H 1.48498 * 109.47439 * 89.99791 * 19 17 15 21 21 H 1.48500 * 109.46947 * 210.00182 * 19 17 15 22 22 H 1.48504 * 109.46747 * 329.99626 * 19 17 15 23 23 C 1.40831 * 119.63794 * 359.71654 * 14 13 12 24 24 C 1.36435 * 119.81815 * 0.02562 * 23 14 13 25 25 C 1.38363 * 120.30600 * 0.23716 * 6 5 4 26 26 C 1.37947 * 120.14847 * 359.48763 * 25 6 5 27 27 H 1.08001 * 120.07861 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.92624 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.90863 * 359.97438 * 12 11 10 30 30 H 1.08003 * 120.09662 * 180.27778 * 13 12 11 31 31 H 0.96997 * 120.00116 * 179.97438 * 18 17 15 32 32 H 1.08009 * 120.08921 * 179.97438 * 23 14 13 33 33 H 1.07997 * 119.91356 * 179.97438 * 24 23 14 34 34 H 1.08003 * 119.92768 * 179.72152 * 25 6 5 35 35 H 1.08005 * 120.07806 * 180.25935 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.6085 1.0423 5 6 4.6490 -0.6037 1.0363 6 6 5.3374 0.0032 0.0009 7 16 7.0994 0.0052 0.0015 8 8 7.5003 -0.1558 1.3553 9 8 7.4997 1.1068 -0.8018 10 8 7.5517 -1.2490 -0.7326 11 6 7.4090 -1.1812 -2.0802 12 6 6.2237 -1.6096 -2.6737 13 6 6.0700 -1.5394 -4.0275 14 6 7.1184 -1.0432 -4.8264 15 6 6.9702 -0.9732 -6.2290 16 1 7.8426 -0.9836 -6.8654 17 6 5.6932 -0.8902 -6.7941 18 7 4.6738 -0.5283 -6.0574 19 14 5.4429 -1.2963 -8.6002 20 1 5.1420 -2.7432 -8.7452 21 1 4.3096 -0.4990 -9.1343 22 1 6.6782 -0.9693 -9.3568 23 6 8.3156 -0.6177 -4.2188 24 6 8.4512 -0.6896 -2.8631 25 6 4.6485 0.6134 -1.0324 26 6 3.2691 0.6111 -1.0419 27 1 2.7335 -1.0815 1.8518 28 1 5.1930 -1.0748 1.8417 29 1 5.4226 -1.9944 -2.0600 30 1 5.1488 -1.8677 -4.4858 31 1 3.7884 -0.4704 -6.4493 32 1 9.1244 -0.2364 -4.8245 33 1 9.3687 -0.3641 -2.3957 34 1 5.1921 1.0892 -1.8352 35 1 2.7326 1.0841 -1.8512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009256527.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:36 Heat of formation + Delta-G solvation = -32.190371 kcal Electronic energy + Delta-G solvation = -24912.631634 eV Core-core repulsion = 21161.343482 eV Total energy + Delta-G solvation = -3751.288152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90757 -39.47593 -37.09340 -36.74709 -36.61180 -35.44839 -33.87250 -31.76943 -31.26966 -30.03271 -29.59468 -25.59274 -24.57344 -22.97393 -22.04087 -21.51372 -19.74372 -19.12100 -18.37642 -17.73479 -17.20799 -16.83776 -15.77938 -15.61545 -14.90618 -14.77747 -14.49143 -14.22341 -14.14457 -13.95736 -13.67663 -13.12253 -12.99253 -12.72770 -12.62509 -12.57514 -12.38052 -12.17964 -12.07309 -11.66584 -11.61619 -11.47359 -11.36326 -11.29309 -11.11204 -10.81066 -10.58446 -10.23121 -9.73270 -9.49752 -9.43029 -9.17866 -8.00423 -7.73983 -7.23558 -4.78386 0.20608 0.82362 1.18615 2.30449 2.43280 2.57729 2.74096 2.85327 2.89156 2.89728 3.19025 3.58392 3.61316 3.64222 4.09356 4.17117 4.49616 4.69559 4.87397 5.18338 5.22459 5.35432 5.44507 5.78015 5.83516 5.84300 5.94763 5.97176 6.05267 6.15229 6.59054 6.60770 6.61920 6.76825 6.84134 7.15670 7.22366 7.46978 7.53748 7.61724 7.80164 8.15682 8.40158 8.48405 9.68305 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.004923 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.009263 B = 5686.246722 C = 7882.958520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.255 3.745 3 C 0.017 3.983 4 C -0.100 4.100 5 C -0.024 4.024 6 C -0.661 4.661 7 S 2.638 3.362 8 O -0.962 6.962 9 O -0.955 6.955 10 O -0.630 6.630 11 C -0.107 4.107 12 C -0.087 4.087 13 C -0.157 4.157 14 C 0.121 3.879 15 C -0.426 4.426 16 H 0.090 0.910 17 C 0.072 3.928 18 N -0.766 5.766 19 Si 0.917 3.083 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.215 4.215 24 C -0.043 4.043 25 C -0.002 4.002 26 C -0.089 4.089 27 H 0.139 0.861 28 H 0.149 0.851 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.290 0.710 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -0.357 5.293 5.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.061 4.061 3 C 0.013 3.987 4 C -0.121 4.121 5 C -0.042 4.042 6 C -0.744 4.744 7 S 2.734 3.266 8 O -0.960 6.960 9 O -0.954 6.954 10 O -0.590 6.590 11 C -0.153 4.153 12 C -0.108 4.108 13 C -0.177 4.177 14 C 0.117 3.883 15 C -0.454 4.454 16 H 0.108 0.892 17 C -0.150 4.150 18 N -0.388 5.388 19 Si 0.740 3.260 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.236 4.236 24 C -0.064 4.064 25 C -0.021 4.021 26 C -0.110 4.110 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.175 0.825 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.087 -0.215 5.670 6.459 hybrid contribution -0.694 -0.114 -0.597 0.922 sum -3.781 -0.328 5.073 6.335 Atomic orbital electron populations 1.81242 1.11962 1.07846 1.07536 1.25711 0.92650 0.93931 0.93776 1.16266 0.84244 1.00896 0.97247 1.21217 0.94286 0.99025 0.97571 1.20867 0.93872 0.93636 0.95872 1.31723 1.29742 1.10005 1.02896 1.04597 0.73352 0.74628 0.74048 1.93526 1.80747 1.85840 1.35899 1.93576 1.79448 1.54288 1.68075 1.85732 1.84224 1.60482 1.28536 1.17574 0.99626 1.24068 0.74059 1.20497 0.94516 0.99691 0.96061 1.20941 1.01153 1.04339 0.91274 1.17826 0.90718 0.86307 0.93481 1.19893 0.93401 1.39891 0.92189 0.89219 1.26105 0.95427 0.91905 1.01586 1.69800 1.01504 1.28786 1.38747 0.86140 0.79399 0.79742 0.80710 1.18826 1.19901 1.18130 1.20653 1.00242 1.09874 0.92820 1.20365 0.95990 0.95796 0.94232 1.21073 0.93912 0.91874 0.95251 1.21364 0.94466 0.98080 0.97074 0.84336 0.83378 0.87993 0.85317 0.89922 0.87382 0.87722 0.82529 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.92 18.54 41.84 0.78 -5.14 16 2 C 0.25 3.22 15.33 -22.47 -0.34 2.87 16 3 C 0.02 0.20 5.73 -106.93 -0.61 -0.41 16 4 C -0.10 -1.09 9.76 -39.17 -0.38 -1.47 16 5 C -0.02 -0.30 9.50 -39.64 -0.38 -0.67 16 6 C -0.66 -9.88 5.28 -39.49 -0.21 -10.09 16 7 S 2.64 46.61 5.42 -107.50 -0.58 46.03 16 8 O -0.96 -18.07 17.26 -66.81 -1.15 -19.23 16 9 O -0.96 -19.01 15.57 -66.81 -1.04 -20.06 16 10 O -0.63 -11.90 10.14 -50.88 -0.52 -12.42 16 11 C -0.11 -2.20 4.82 -38.78 -0.19 -2.38 16 12 C -0.09 -1.74 8.33 -39.83 -0.33 -2.07 16 13 C -0.16 -3.41 8.64 -39.25 -0.34 -3.75 16 14 C 0.12 2.73 5.57 -106.80 -0.60 2.14 16 15 C -0.43 -9.44 9.04 -37.83 -0.34 -9.78 16 16 H 0.09 1.89 7.91 -52.49 -0.41 1.47 16 17 C 0.07 1.51 5.13 -17.34 -0.09 1.42 16 18 N -0.77 -16.40 10.96 55.54 0.61 -15.79 16 19 Si 0.92 15.77 29.60 -169.99 -5.03 10.74 16 20 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 21 H -0.27 -4.68 7.11 56.52 0.40 -4.27 16 22 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 23 C -0.22 -4.60 9.74 -39.25 -0.38 -4.99 16 24 C -0.04 -0.89 9.12 -39.83 -0.36 -1.26 16 25 C 0.00 -0.03 8.44 -39.64 -0.33 -0.37 16 26 C -0.09 -1.12 9.76 -39.17 -0.38 -1.50 16 27 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.15 1.60 7.60 -52.48 -0.40 1.21 16 29 H 0.10 1.81 7.96 -52.49 -0.42 1.39 16 30 H 0.13 2.84 6.16 -52.48 -0.32 2.51 16 31 H 0.29 5.60 8.30 -40.82 -0.34 5.26 16 32 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.16 2.44 7.60 -52.48 -0.40 2.04 16 35 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -26.64 330.77 -10.01 -36.65 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.78 Total: 6.56 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -5.27 Total: -32.33 kcal Atomic # 7 Polarization: -22.32 SS G_CDS: 1.38 Total: -20.93 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -2.71 Total: -51.70 kcal Atomic # 14 Polarization: 15.77 SS G_CDS: -5.03 Total: 10.74 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.58 Total: 46.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.64 -10.01 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009256527.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.455 kcal (2) G-P(sol) polarization free energy of solvation -26.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds