Wall clock time and date at job start Tue Mar 31 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39648 * 120.15231 * 85.82302 * 3 2 1 5 5 C 1.37931 * 119.84763 * 179.76313 * 4 3 2 6 6 C 1.38382 * 120.14707 * 0.48776 * 5 4 3 7 7 C 1.38332 * 120.31079 * 359.76392 * 6 5 4 8 8 S 1.76200 * 119.92766 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.40143 * 23.56510 * 8 7 6 10 10 O 1.42102 * 106.40373 * 156.48287 * 8 7 6 11 11 O 1.52201 * 107.21889 * 270.02366 * 8 7 6 12 12 C 1.35676 * 113.99882 * 74.99929 * 11 8 7 13 13 C 1.39307 * 119.81772 * 269.72338 * 12 11 8 14 14 C 1.36436 * 120.18476 * 179.76105 * 13 12 11 15 15 C 1.40838 * 119.81241 * 0.51283 * 14 13 12 16 16 C 1.41207 * 120.18376 * 179.72060 * 15 14 13 17 17 H 1.07994 * 120.00107 * 204.56839 * 16 15 14 18 18 C 1.39900 * 119.99962 * 24.56295 * 16 15 14 19 19 N 1.30877 * 119.99676 * 17.92826 * 18 16 15 20 20 Si 1.86795 * 120.00050 * 197.92603 * 18 16 15 21 21 H 1.48501 * 109.47036 * 90.00583 * 20 18 16 22 22 H 1.48500 * 109.46987 * 210.00028 * 20 18 16 23 23 H 1.48499 * 109.47483 * 330.00028 * 20 18 16 24 24 C 1.40838 * 119.63789 * 359.74209 * 15 14 13 25 25 C 1.36435 * 119.81526 * 0.02562 * 24 15 14 26 26 C 1.37972 * 120.15111 * 0.02562 * 7 6 5 27 27 H 1.08000 * 120.07481 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.92364 * 180.23463 * 5 4 3 29 29 H 1.08005 * 119.84578 * 179.74422 * 6 5 4 30 30 H 1.07999 * 119.90526 * 0.02562 * 13 12 11 31 31 H 1.08002 * 120.09724 * 180.25293 * 14 13 12 32 32 H 0.97003 * 120.00479 * 179.97438 * 19 18 16 33 33 H 1.07999 * 120.09265 * 179.97438 * 24 15 14 34 34 H 1.08000 * 119.91441 * 179.97438 * 25 24 15 35 35 H 1.07996 * 120.07881 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.0870 -1.2043 5 6 4.6488 -0.0809 -1.1974 6 6 5.3374 0.0016 0.0001 7 6 4.6489 0.0834 1.1972 8 16 5.5359 0.1874 2.7161 9 8 6.8175 0.7120 2.3972 10 8 4.6578 0.7966 3.6527 11 8 5.7634 -1.2364 3.2034 12 6 6.7261 -1.9060 2.5210 13 6 6.3853 -2.6526 1.3954 14 6 7.3481 -3.3249 0.7007 15 6 8.6881 -3.2714 1.1310 16 6 9.6900 -3.9690 0.4214 17 1 10.5990 -4.2665 0.9228 18 6 9.5049 -4.2748 -0.9312 19 7 8.6007 -3.6355 -1.6288 20 14 10.5485 -5.5953 -1.7414 21 1 9.8732 -6.9111 -1.6077 22 1 10.7246 -5.2734 -3.1804 23 1 11.8771 -5.6512 -1.0805 24 6 9.0233 -2.5186 2.2731 25 6 8.0492 -1.8482 2.9537 26 6 3.2692 0.0827 1.2045 27 1 2.7333 -0.1559 -2.1392 28 1 5.1925 -0.1448 -2.1283 29 1 6.4174 0.0018 0.0002 30 1 5.3566 -2.6958 1.0692 31 1 7.0828 -3.8999 -0.1741 32 1 8.4726 -3.8472 -2.5667 33 1 10.0484 -2.4728 2.6098 34 1 8.3044 -1.2708 3.8300 35 1 2.7329 0.1462 2.1398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009365683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:04 Heat of formation + Delta-G solvation = -32.969074 kcal Electronic energy + Delta-G solvation = -24917.697478 eV Core-core repulsion = 21166.375558 eV Total energy + Delta-G solvation = -3751.321919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.055 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91095 -39.48692 -37.09983 -36.75620 -36.53294 -35.44934 -33.87985 -31.68181 -31.41446 -30.04021 -29.60123 -25.59961 -24.13874 -23.40346 -22.04966 -21.51360 -20.08030 -19.31815 -17.77627 -17.49085 -16.93696 -16.55650 -16.33689 -15.74810 -15.59750 -14.62581 -14.44699 -14.20700 -14.18030 -14.07177 -13.29114 -13.12877 -12.96084 -12.68735 -12.58307 -12.47076 -12.34365 -12.15672 -12.06653 -11.71540 -11.63714 -11.53479 -11.44973 -11.36106 -11.11944 -10.80540 -10.55319 -10.23936 -9.74584 -9.54208 -9.49952 -9.12266 -8.01204 -7.74672 -7.24593 -4.79146 0.48517 0.75047 0.92565 2.29753 2.49587 2.67303 2.73658 2.84515 2.88164 2.88982 3.18277 3.60205 3.60967 3.67555 4.08977 4.16249 4.58860 4.68691 4.81344 5.05986 5.20556 5.30390 5.42596 5.65952 5.83358 5.87272 5.94191 5.97141 6.11959 6.12579 6.57623 6.58355 6.61134 6.76167 6.83366 7.14992 7.30192 7.46490 7.52945 7.61010 7.79367 8.14912 8.39345 8.47694 9.67380 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.004308 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.272262 B = 6497.289857 C = 7973.894325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.261 3.739 3 C -0.061 4.061 4 C -0.022 4.022 5 C -0.137 4.137 6 C 0.028 3.972 7 C -0.688 4.688 8 S 2.640 3.360 9 O -0.955 6.955 10 O -0.962 6.962 11 O -0.631 6.631 12 C -0.107 4.107 13 C -0.088 4.088 14 C -0.157 4.157 15 C 0.121 3.879 16 C -0.426 4.426 17 H 0.090 0.910 18 C 0.072 3.928 19 N -0.766 5.766 20 Si 0.917 3.083 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.215 4.215 25 C -0.043 4.043 26 C 0.027 3.973 27 H 0.138 0.862 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.289 0.711 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 2.188 -2.720 4.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.055 4.055 3 C -0.065 4.065 4 C -0.043 4.043 5 C -0.155 4.155 6 C 0.009 3.991 7 C -0.770 4.770 8 S 2.736 3.264 9 O -0.954 6.954 10 O -0.960 6.960 11 O -0.590 6.590 12 C -0.153 4.153 13 C -0.108 4.108 14 C -0.177 4.177 15 C 0.117 3.883 16 C -0.454 4.454 17 H 0.108 0.892 18 C -0.150 4.150 19 N -0.389 5.389 20 Si 0.740 3.260 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.236 4.236 25 C -0.064 4.064 26 C 0.006 3.994 27 H 0.155 0.845 28 H 0.163 0.837 29 H 0.172 0.828 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.631 2.530 -2.272 5.745 hybrid contribution 0.263 -0.478 -1.141 1.265 sum -4.368 2.052 -3.413 5.911 Atomic orbital electron populations 1.81243 1.11903 1.09240 1.07180 1.25599 0.92486 0.93525 0.93862 1.15994 0.84437 1.10846 0.95202 1.21447 0.94636 0.91643 0.96553 1.21308 0.93490 1.01521 0.99219 1.21394 1.01625 0.85501 0.90581 1.31477 1.05745 1.17417 1.22351 1.04522 0.73685 0.75131 0.73055 1.93575 1.38702 1.78729 1.84361 1.93529 1.67682 1.75009 1.59829 1.85730 1.61455 1.46262 1.65580 1.17581 0.85215 1.11619 1.00876 1.20502 0.98787 0.97784 0.93758 1.20936 0.91795 1.03458 1.01494 1.17825 0.92626 0.87633 0.90244 1.19891 1.03253 1.28025 0.94238 0.89233 1.26103 0.95393 0.95726 0.97766 1.69802 1.27281 1.32252 1.09559 0.86137 0.80794 0.80618 0.78425 1.18833 1.19887 1.18154 1.20657 0.97482 1.04543 1.00900 1.20372 0.90909 0.97281 0.97834 1.20918 0.92250 0.88607 0.97663 0.84462 0.83710 0.82783 0.87999 0.85294 0.89940 0.87376 0.87721 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.18 18.54 41.84 0.78 -5.40 16 2 C 0.26 3.37 15.33 -22.47 -0.34 3.03 16 3 C -0.06 -0.74 5.73 -106.93 -0.61 -1.35 16 4 C -0.02 -0.23 9.76 -39.17 -0.38 -0.61 16 5 C -0.14 -1.56 10.03 -39.64 -0.40 -1.96 16 6 C 0.03 0.40 8.43 -39.49 -0.33 0.07 16 7 C -0.69 -10.42 5.27 -39.64 -0.21 -10.63 16 8 S 2.64 47.35 5.42 -107.50 -0.58 46.77 16 9 O -0.96 -19.05 15.58 -66.81 -1.04 -20.09 16 10 O -0.96 -18.55 17.27 -66.81 -1.15 -19.70 16 11 O -0.63 -12.06 10.14 -50.86 -0.52 -12.58 16 12 C -0.11 -2.20 4.82 -38.78 -0.19 -2.38 16 13 C -0.09 -1.75 8.31 -39.83 -0.33 -2.08 16 14 C -0.16 -3.37 8.64 -39.25 -0.34 -3.71 16 15 C 0.12 2.71 5.57 -106.80 -0.60 2.12 16 16 C -0.43 -9.35 9.04 -37.83 -0.34 -9.70 16 17 H 0.09 1.87 7.91 -52.49 -0.41 1.45 16 18 C 0.07 1.49 5.13 -17.34 -0.09 1.40 16 19 N -0.77 -16.04 10.96 55.55 0.61 -15.44 16 20 Si 0.92 15.49 29.60 -169.99 -5.03 10.46 16 21 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 22 H -0.27 -4.57 7.11 56.52 0.40 -4.16 16 23 H -0.26 -4.36 7.11 56.52 0.40 -3.95 16 24 C -0.22 -4.58 9.74 -39.25 -0.38 -4.97 16 25 C -0.04 -0.90 9.12 -39.83 -0.36 -1.26 16 26 C 0.03 0.37 9.23 -39.16 -0.36 0.01 16 27 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.15 2.34 7.60 -52.48 -0.40 1.94 16 30 H 0.10 1.80 7.96 -52.49 -0.42 1.39 16 31 H 0.13 2.80 6.16 -52.49 -0.32 2.47 16 32 H 0.29 5.43 8.30 -40.82 -0.34 5.09 16 33 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.15 1.84 7.61 -52.49 -0.40 1.45 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -26.64 330.76 -10.01 -36.64 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.78 Total: 6.38 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -5.27 Total: -32.03 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 1.38 Total: -20.84 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.71 Total: -52.38 kcal Atomic # 14 Polarization: 15.49 SS G_CDS: -5.03 Total: 10.46 kcal Atomic # 16 Polarization: 47.35 SS G_CDS: -0.58 Total: 46.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.64 -10.01 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009365683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.675 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds