Wall clock time and date at job start Tue Mar 31 2020 04:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86810 * 119.99693 * 2 1 4 4 H 1.48498 * 109.47055 * 269.99519 * 3 2 1 5 5 H 1.48494 * 109.46869 * 30.00079 * 3 2 1 6 6 H 1.48501 * 109.46963 * 149.99900 * 3 2 1 7 7 C 1.37874 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99740 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99887 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00062 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99941 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00106 * 180.02562 * 11 10 9 14 14 S 1.81401 * 109.47306 * 180.02562 * 13 11 10 15 15 C 1.76196 * 103.00401 * 180.02562 * 14 13 11 16 16 C 1.38967 * 120.06586 * 0.29299 * 15 14 13 17 17 C 1.38086 * 119.92793 * 180.21446 * 16 15 14 18 18 C 1.38380 * 120.06885 * 359.51104 * 17 16 15 19 19 Br 1.89093 * 119.93061 * 180.25790 * 18 17 16 20 20 C 1.38379 * 120.14129 * 0.23980 * 18 17 16 21 21 C 1.38087 * 120.06644 * 359.97438 * 20 18 17 22 22 H 0.97001 * 120.00024 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47347 * 60.00563 * 9 7 2 24 24 H 1.08998 * 109.47524 * 299.99908 * 9 7 2 25 25 H 0.97005 * 120.00508 * 0.02562 * 10 9 7 26 26 H 1.08995 * 109.47446 * 60.00132 * 13 11 10 27 27 H 1.08999 * 109.47271 * 300.00166 * 13 11 10 28 28 H 1.07995 * 120.04262 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.96910 * 179.79617 * 17 16 15 30 30 H 1.07999 * 119.96294 * 180.02562 * 20 18 17 31 31 H 1.08006 * 120.02797 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0022 11 6 5.3251 -2.8213 0.0024 12 8 6.1132 -1.8995 0.0021 13 6 5.8274 -4.2421 0.0030 14 16 7.6415 -4.2421 0.0038 15 6 8.0379 -5.9589 0.0036 16 6 7.0228 -6.9079 -0.0032 17 6 7.3367 -8.2526 0.0011 18 6 8.6606 -8.6555 0.0021 19 35 9.0860 -10.4979 0.0007 20 6 9.6737 -7.7129 0.0037 21 6 9.3663 -6.3667 0.0038 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6799 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 3.3697 -3.3125 0.0021 26 1 5.4642 -4.7563 -0.8868 27 1 5.4641 -4.7556 0.8931 28 1 5.9894 -6.5941 -0.0088 29 1 6.5483 -8.9906 -0.0008 30 1 10.7059 -8.0306 0.0040 31 1 10.1576 -5.6316 0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011341060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:29 Heat of formation + Delta-G solvation = -12.006041 kcal Electronic energy + Delta-G solvation = -16345.811550 eV Core-core repulsion = 13378.538121 eV Total energy + Delta-G solvation = -2967.273430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 328.983 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37932 -39.09951 -34.50059 -32.79563 -32.49835 -31.67213 -30.35150 -29.49959 -27.49451 -23.26314 -22.81289 -22.18579 -20.23861 -18.39349 -17.24306 -16.50843 -16.08841 -15.76718 -15.49343 -15.44652 -14.74758 -14.16747 -13.84559 -13.82965 -13.66146 -13.24531 -12.98469 -12.42476 -12.06782 -11.95991 -11.67960 -11.45483 -11.08018 -10.83910 -10.62261 -10.35187 -10.04843 -9.67448 -9.62817 -9.54066 -9.45671 -8.87038 -8.35630 -7.57497 -6.28860 -4.32367 0.60481 0.91470 1.10128 1.33526 2.17705 2.91056 3.16205 3.21850 3.28859 3.36429 3.70982 4.26717 4.35510 4.48416 4.85450 4.86063 4.94725 4.98445 5.06447 5.14835 5.20536 5.52386 5.64708 5.81639 5.84138 6.32280 6.66287 6.94825 7.00377 7.25917 7.95600 8.34218 8.58399 8.72296 9.30057 10.82830 Molecular weight = 328.98amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.002065 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.901505 B =13557.354279 C =14232.808485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.696 5.696 11 C 0.518 3.482 12 O -0.539 6.539 13 C -0.154 4.154 14 S -0.016 6.016 15 C -0.083 4.083 16 C -0.134 4.134 17 C -0.067 4.067 18 C -0.104 4.104 19 Br -0.055 7.055 20 C -0.070 4.070 21 C -0.098 4.098 22 H 0.269 0.731 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.399 0.601 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.751 -22.115 0.025 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.345 5.345 11 C 0.300 3.700 12 O -0.417 6.417 13 C -0.305 4.305 14 S 0.230 5.770 15 C -0.197 4.197 16 C -0.159 4.159 17 C -0.089 4.089 18 C -0.187 4.187 19 Br 0.030 6.970 20 C -0.092 4.092 21 C -0.123 4.123 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.233 0.767 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.905 -20.877 0.028 28.846 hybrid contribution -1.093 -0.318 -0.024 1.138 sum 18.812 -21.196 0.004 28.340 Atomic orbital electron populations 1.69874 1.06219 1.27562 1.49041 1.24792 0.94808 0.99210 0.93742 0.86818 0.80571 0.83191 0.79135 1.19762 1.20795 1.18472 1.21047 0.88309 0.95313 1.53814 0.90178 1.19574 0.95424 0.78004 0.97100 1.46105 1.04955 1.11535 1.71911 1.19441 0.83797 0.88539 0.78204 1.90717 1.55127 1.45336 1.50559 1.23953 0.97479 1.01364 1.07745 1.86353 1.02775 0.97531 1.90322 1.22414 0.96818 0.99192 1.01287 1.21249 0.98878 0.92438 1.03381 1.21023 0.94724 0.96044 0.97112 1.21738 0.95993 0.90518 1.10429 1.96715 1.94441 1.08041 1.97799 1.21033 0.98812 0.91812 0.97535 1.20745 0.94621 0.95512 1.01410 0.92142 0.95396 0.95842 0.76723 0.86542 0.86542 0.84849 0.84707 0.84584 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.55 -14.50 9.83 -34.44 -0.34 -14.83 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 C 0.22 5.21 4.50 -5.19 -0.02 5.18 16 10 N -0.70 -13.10 5.55 -61.47 -0.34 -13.44 16 11 C 0.52 9.14 7.85 -10.99 -0.09 9.05 16 12 O -0.54 -11.67 15.86 5.56 0.09 -11.58 16 13 C -0.15 -1.88 4.82 36.01 0.17 -1.71 16 14 S -0.02 -0.21 21.06 -107.50 -2.26 -2.47 16 15 C -0.08 -0.88 6.11 -39.05 -0.24 -1.12 16 16 C -0.13 -1.27 9.36 -39.37 -0.37 -1.64 16 17 C -0.07 -0.60 9.78 -39.58 -0.39 -0.98 16 18 C -0.10 -0.94 6.23 -39.48 -0.25 -1.18 16 19 Br -0.06 -0.45 33.69 -68.01 -2.29 -2.74 16 20 C -0.07 -0.60 9.78 -39.58 -0.39 -0.99 16 21 C -0.10 -0.93 9.79 -39.37 -0.39 -1.31 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 24 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 25 H 0.40 6.39 8.32 -40.82 -0.34 6.06 16 26 H 0.12 1.15 7.73 -51.93 -0.40 0.75 16 27 H 0.12 1.15 7.76 -51.92 -0.40 0.75 16 28 H 0.13 1.06 5.88 -52.49 -0.31 0.75 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -31.14 306.65 -9.53 -40.67 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.07 Total: 1.23 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.38 Total: -7.46 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.43 Total: -38.53 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.26 Total: -2.47 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.14 -9.53 -40.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011341060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.667 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds