Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28224 * 124.27395 * 2 1 4 4 C 1.33936 * 117.81512 * 180.26404 * 3 2 1 5 5 C 1.40052 * 111.93458 * 0.02562 * 4 3 2 6 6 S 1.70758 * 124.27671 * 180.29765 * 2 1 3 7 7 C 1.40470 * 118.74009 * 180.02562 * 5 4 3 8 8 C 1.48155 * 120.29782 * 179.97438 * 7 5 4 9 9 C 1.39469 * 120.12967 * 324.71748 * 8 7 5 10 10 C 1.37985 * 119.86452 * 179.77076 * 9 8 7 11 11 C 1.38335 * 120.13257 * 0.50684 * 10 9 8 12 12 C 1.38354 * 120.27121 * 359.74370 * 11 10 9 13 13 C 1.37982 * 120.13133 * 0.02562 * 12 11 10 14 14 N 1.32619 * 119.41026 * 359.97438 * 7 5 4 15 15 N 1.28196 * 122.34299 * 0.02562 * 14 7 5 16 16 C 1.32177 * 123.13213 * 0.02562 * 15 14 7 17 17 S 1.76200 * 120.15687 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99812 * 359.97438 * 17 16 15 19 19 H 1.07998 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.38727 * 119.99623 * 180.02562 * 18 17 16 21 21 N 1.31599 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99689 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46765 * 89.99883 * 22 20 18 24 24 H 1.48496 * 109.46952 * 209.99728 * 22 20 18 25 25 H 1.48498 * 109.47098 * 330.00189 * 22 20 18 26 26 H 1.08997 * 109.46945 * 269.70198 * 1 2 3 27 27 H 1.08994 * 109.46924 * 29.70291 * 1 2 3 28 28 H 1.09005 * 109.46910 * 149.70173 * 1 2 3 29 29 H 1.08001 * 120.06664 * 359.97438 * 9 8 7 30 30 H 1.08002 * 119.92861 * 180.25671 * 10 9 8 31 31 H 1.08008 * 119.86850 * 179.76641 * 11 10 9 32 32 H 1.07997 * 119.93409 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.06820 * 180.02562 * 13 12 11 34 34 H 0.96999 * 120.00171 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2291 1.0596 0.0000 4 6 3.5600 0.9089 -0.0055 5 6 3.9337 -0.4408 -0.0110 6 16 2.4687 -1.4110 -0.0073 7 6 5.3009 -0.7631 -0.0165 8 6 5.7349 -2.1797 -0.0219 9 6 5.0008 -3.1394 0.6748 10 6 5.4073 -4.4579 0.6622 11 6 6.5462 -4.8269 -0.0309 12 6 7.2815 -3.8786 -0.7196 13 6 6.8824 -2.5578 -0.7183 14 7 6.1998 0.2119 -0.0170 15 7 5.8684 1.4503 -0.0120 16 6 4.6124 1.8620 -0.0055 17 16 4.2459 3.5855 0.0004 18 6 5.8795 4.2457 -0.0043 19 1 6.7306 3.5809 -0.0089 20 6 6.0724 5.6195 -0.0010 21 7 5.0353 6.4296 0.0052 22 14 7.8043 6.3194 -0.0052 23 1 8.2581 6.5090 -1.4064 24 1 7.8114 7.6270 0.6986 25 1 8.7201 5.3787 0.6888 26 1 -0.3633 -0.0053 1.0276 27 1 -0.3633 0.8926 -0.5092 28 1 -0.3633 -0.8873 -0.5185 29 1 4.1142 -2.8516 1.2203 30 1 4.8374 -5.2026 1.1979 31 1 6.8626 -5.8596 -0.0348 32 1 8.1696 -4.1728 -1.2592 33 1 7.4569 -1.8185 -1.2566 34 1 5.1702 7.3901 0.0071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012232843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = 101.083575 kcal Electronic energy + Delta-G solvation = -21614.246252 eV Core-core repulsion = 18343.782913 eV Total energy + Delta-G solvation = -3270.463338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.035 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69002 -38.99645 -37.89001 -33.20248 -32.95897 -32.22829 -30.91170 -29.70564 -28.72542 -26.01749 -25.04283 -24.05607 -22.54324 -21.73334 -20.86214 -18.81979 -17.89627 -17.42790 -16.86598 -16.50720 -15.40754 -15.24773 -15.15884 -14.75845 -14.61558 -13.87242 -13.80229 -13.57677 -13.38353 -13.21933 -12.75163 -12.51146 -12.25894 -11.84590 -11.78857 -11.33364 -11.31105 -11.17759 -11.09227 -10.71984 -10.54592 -10.06202 -9.60579 -9.53796 -9.39455 -9.07992 -8.97852 -8.91710 -8.80291 -8.35007 -6.95902 -6.72618 -4.38377 0.43523 0.80278 1.26642 1.42794 1.65622 1.78224 2.60188 2.72701 3.08663 3.12667 3.21741 3.74332 3.83218 3.94040 4.12075 4.45849 4.68603 4.75995 4.90809 4.94543 4.96625 5.03836 5.12260 5.21177 5.30764 5.40410 5.45106 5.60540 5.75534 5.87081 5.99969 6.08975 6.19141 6.27564 6.48992 6.56805 6.66951 6.98185 7.33757 7.75774 8.18837 8.78981 9.40421 10.32777 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.004225 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.370924 B = 6625.580515 C = 8738.232160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.057 3.943 3 N -0.435 5.435 4 C 0.068 3.932 5 C -0.166 4.166 6 S 0.132 5.868 7 C 0.077 3.923 8 C -0.015 4.015 9 C -0.112 4.112 10 C -0.117 4.117 11 C -0.122 4.122 12 C -0.120 4.120 13 C -0.087 4.087 14 N -0.196 5.196 15 N -0.259 5.259 16 C 0.071 3.929 17 S 0.233 5.767 18 C -0.551 4.551 19 H 0.116 0.884 20 C 0.078 3.922 21 N -0.860 5.860 22 Si 0.935 3.065 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.262 1.262 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -18.134 -0.154 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.230 4.230 3 N -0.149 5.149 4 C -0.071 4.071 5 C -0.295 4.295 6 S 0.384 5.616 7 C -0.083 4.083 8 C -0.017 4.017 9 C -0.132 4.132 10 C -0.135 4.135 11 C -0.141 4.141 12 C -0.138 4.138 13 C -0.107 4.107 14 N -0.039 5.039 15 N -0.110 5.110 16 C -0.187 4.187 17 S 0.490 5.510 18 C -0.699 4.699 19 H 0.134 0.866 20 C -0.134 4.134 21 N -0.492 5.492 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.186 1.186 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.657 -16.919 -0.150 17.840 hybrid contribution 1.239 0.189 0.029 1.254 sum -4.418 -16.730 -0.122 17.303 Atomic orbital electron populations 1.20473 0.84831 1.04296 1.03984 1.26869 1.01792 0.90912 1.03395 1.65875 1.03362 1.31135 1.14491 1.19202 0.89764 0.91292 1.06830 1.24614 0.99229 0.97479 1.08201 1.83504 0.94590 1.10629 1.72910 1.20061 0.86584 0.94348 1.07341 1.18297 0.95848 0.89523 0.98077 1.21190 0.99893 0.92951 0.99210 1.20969 0.97169 0.95488 0.99872 1.21181 0.95576 0.99376 0.97985 1.21102 0.99942 0.92951 0.99794 1.21286 0.95177 0.96177 0.98022 1.72802 1.29807 0.95414 1.05866 1.73217 1.13856 1.06689 1.17244 1.25589 0.90234 1.04135 0.98732 1.83740 1.11814 0.83690 1.71805 1.23852 0.94214 0.95006 1.56815 0.86617 1.25265 0.99898 0.95660 0.92549 1.69946 1.30757 1.04982 1.43519 0.85867 0.80981 0.78172 0.79062 1.19551 1.20379 1.18580 0.89462 0.88978 0.90075 0.86097 0.85871 0.86150 0.85848 0.85199 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.44 36.01 0.38 -0.35 16 2 C 0.06 0.84 7.30 -13.78 -0.10 0.74 16 3 N -0.43 -8.39 10.53 -8.82 -0.09 -8.49 16 4 C 0.07 1.47 6.88 -84.83 -0.58 0.89 16 5 C -0.17 -3.16 6.18 -38.06 -0.24 -3.39 16 6 S 0.13 1.82 20.63 -107.50 -2.22 -0.40 16 7 C 0.08 1.51 6.57 -82.61 -0.54 0.97 16 8 C -0.02 -0.24 5.74 -104.91 -0.60 -0.84 16 9 C -0.11 -1.51 8.83 -39.22 -0.35 -1.86 16 10 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 11 C -0.12 -1.27 10.04 -39.50 -0.40 -1.67 16 12 C -0.12 -1.38 10.03 -39.63 -0.40 -1.78 16 13 C -0.09 -1.26 9.60 -39.22 -0.38 -1.64 16 14 N -0.20 -4.38 11.14 33.45 0.37 -4.01 16 15 N -0.26 -6.41 9.56 31.94 0.31 -6.10 16 16 C 0.07 1.72 7.11 -15.97 -0.11 1.61 16 17 S 0.23 5.96 21.65 -107.50 -2.33 3.63 16 18 C -0.55 -15.04 9.26 30.91 0.29 -14.75 16 19 H 0.12 3.22 6.56 -52.49 -0.34 2.87 16 20 C 0.08 2.05 5.49 -17.47 -0.10 1.96 16 21 N -0.86 -23.26 13.22 55.49 0.73 -22.53 16 22 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.12 1.55 6.18 -52.49 -0.32 1.23 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.92 7.98 -52.49 -0.42 1.51 16 34 H 0.28 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -31.02 328.75 -9.58 -40.60 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -2.76 Total: -1.34 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.53 Total: -21.80 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 1.32 Total: -41.13 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -4.55 Total: 3.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.02 -9.58 -40.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012232843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.687 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds