Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28224 * 124.27395 * 2 1 4 4 C 1.33936 * 117.81512 * 180.26404 * 3 2 1 5 5 C 1.40052 * 111.93458 * 0.02562 * 4 3 2 6 6 S 1.70758 * 124.27671 * 180.29765 * 2 1 3 7 7 C 1.40470 * 118.74009 * 180.02562 * 5 4 3 8 8 C 1.48155 * 120.29782 * 179.97438 * 7 5 4 9 9 C 1.39469 * 120.12967 * 324.71748 * 8 7 5 10 10 C 1.37985 * 119.86452 * 179.77076 * 9 8 7 11 11 C 1.38335 * 120.13257 * 0.50684 * 10 9 8 12 12 C 1.38354 * 120.27121 * 359.74370 * 11 10 9 13 13 C 1.37982 * 120.13133 * 0.02562 * 12 11 10 14 14 N 1.32619 * 119.41026 * 359.97438 * 7 5 4 15 15 N 1.28196 * 122.34299 * 0.02562 * 14 7 5 16 16 C 1.32177 * 123.13213 * 0.02562 * 15 14 7 17 17 S 1.76200 * 120.15687 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99812 * 359.97438 * 17 16 15 19 19 H 1.07998 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.38727 * 119.99623 * 180.02562 * 18 17 16 21 21 N 1.31599 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99689 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46765 * 89.99883 * 22 20 18 24 24 H 1.48496 * 109.46952 * 209.99728 * 22 20 18 25 25 H 1.48498 * 109.47098 * 330.00189 * 22 20 18 26 26 H 1.08997 * 109.46945 * 269.70198 * 1 2 3 27 27 H 1.08994 * 109.46924 * 29.70291 * 1 2 3 28 28 H 1.09005 * 109.46910 * 149.70173 * 1 2 3 29 29 H 1.08001 * 120.06664 * 359.97438 * 9 8 7 30 30 H 1.08002 * 119.92861 * 180.25671 * 10 9 8 31 31 H 1.08008 * 119.86850 * 179.76641 * 11 10 9 32 32 H 1.07997 * 119.93409 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.06820 * 180.02562 * 13 12 11 34 34 H 0.96999 * 120.00171 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2291 1.0596 0.0000 4 6 3.5600 0.9089 -0.0055 5 6 3.9337 -0.4408 -0.0110 6 16 2.4687 -1.4110 -0.0073 7 6 5.3009 -0.7631 -0.0165 8 6 5.7349 -2.1797 -0.0219 9 6 5.0008 -3.1394 0.6748 10 6 5.4073 -4.4579 0.6622 11 6 6.5462 -4.8269 -0.0309 12 6 7.2815 -3.8786 -0.7196 13 6 6.8824 -2.5578 -0.7183 14 7 6.1998 0.2119 -0.0170 15 7 5.8684 1.4503 -0.0120 16 6 4.6124 1.8620 -0.0055 17 16 4.2459 3.5855 0.0004 18 6 5.8795 4.2457 -0.0043 19 1 6.7306 3.5809 -0.0089 20 6 6.0724 5.6195 -0.0010 21 7 5.0353 6.4296 0.0052 22 14 7.8043 6.3194 -0.0052 23 1 8.2581 6.5090 -1.4064 24 1 7.8114 7.6270 0.6986 25 1 8.7201 5.3787 0.6888 26 1 -0.3633 -0.0053 1.0276 27 1 -0.3633 0.8926 -0.5092 28 1 -0.3633 -0.8873 -0.5185 29 1 4.1142 -2.8516 1.2203 30 1 4.8374 -5.2026 1.1979 31 1 6.8626 -5.8596 -0.0348 32 1 8.1696 -4.1728 -1.2592 33 1 7.4569 -1.8185 -1.2566 34 1 5.1702 7.3901 0.0071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012232843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = 81.042726 kcal Electronic energy + Delta-G solvation = -21615.115288 eV Core-core repulsion = 18343.782913 eV Total energy + Delta-G solvation = -3271.332375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 329.035 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28457 -40.12895 -39.35565 -34.88518 -34.61724 -33.56675 -31.90884 -31.03086 -29.95627 -27.94832 -26.58999 -25.45793 -23.61303 -22.93709 -22.15764 -20.51052 -19.37834 -19.06979 -18.35793 -17.64088 -17.06804 -16.89476 -16.47044 -16.26825 -15.69665 -15.19046 -15.10362 -14.84649 -14.67722 -14.35172 -13.82665 -13.63498 -13.43492 -13.34736 -13.21457 -13.06776 -12.92530 -12.54395 -12.31823 -12.17257 -12.04027 -11.71764 -11.34002 -11.24311 -10.83123 -10.68658 -10.63941 -10.08134 -9.90574 -9.68040 -8.77226 -8.62609 -6.40682 -1.02452 -0.64554 -0.07168 0.30145 0.41288 0.51292 0.95888 1.17022 1.32012 1.35238 1.48421 2.04913 2.32292 2.55279 2.80101 2.82348 2.89794 3.08974 3.38288 3.51102 3.71898 3.98152 4.06726 4.24197 4.37812 4.41193 4.49644 4.60450 4.69113 4.72214 4.78698 4.97813 5.11404 5.15259 5.38450 5.50180 5.55948 5.56520 6.02195 6.15729 6.37809 6.84205 7.69537 8.46040 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.004225 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.370924 B = 6625.580515 C = 8738.232160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.074 3.926 3 N -0.484 5.484 4 C 0.068 3.932 5 C -0.215 4.215 6 S 0.253 5.747 7 C 0.118 3.882 8 C -0.059 4.059 9 C -0.113 4.113 10 C -0.109 4.109 11 C -0.102 4.102 12 C -0.119 4.119 13 C -0.102 4.102 14 N -0.246 5.246 15 N -0.291 5.291 16 C 0.070 3.930 17 S 0.150 5.850 18 C -0.575 4.575 19 H 0.095 0.905 20 C 0.034 3.966 21 N -0.897 5.897 22 Si 0.998 3.002 23 H -0.263 1.263 24 H -0.262 1.262 25 H -0.268 1.268 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.111 0.889 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 -24.246 0.131 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.210 4.210 3 N -0.199 5.199 4 C -0.072 4.072 5 C -0.344 4.344 6 S 0.506 5.494 7 C -0.043 4.043 8 C -0.061 4.061 9 C -0.133 4.133 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.137 4.137 13 C -0.121 4.121 14 N -0.085 5.085 15 N -0.137 5.137 16 C -0.191 4.191 17 S 0.400 5.600 18 C -0.723 4.723 19 H 0.114 0.886 20 C -0.173 4.173 21 N -0.531 5.531 22 Si 0.818 3.182 23 H -0.187 1.187 24 H -0.186 1.186 25 H -0.193 1.193 26 H 0.132 0.868 27 H 0.112 0.888 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.129 0.871 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.203 -23.164 0.132 24.258 hybrid contribution 1.479 1.164 -0.058 1.883 sum -5.724 -22.000 0.074 22.732 Atomic orbital electron populations 1.20890 0.80639 1.06363 1.06261 1.28121 1.04260 0.90885 0.97742 1.66014 1.02438 1.33442 1.18055 1.19320 0.90719 0.91748 1.05375 1.25119 1.01537 0.98297 1.09486 1.83023 0.89391 1.07085 1.69861 1.20852 0.86905 0.95748 1.00795 1.18392 0.98143 0.87839 1.01758 1.21335 0.99679 0.93631 0.98681 1.21439 0.97331 0.94797 0.99134 1.21731 0.94200 1.00961 0.95180 1.21436 1.00885 0.91583 0.99746 1.21321 0.94731 0.97658 0.98422 1.72778 1.30949 0.95177 1.09569 1.73125 1.14772 1.08356 1.17484 1.25500 0.91261 1.03625 0.98722 1.83564 1.12100 0.85782 1.78547 1.23724 0.93910 0.95434 1.59203 0.88646 1.26093 1.03642 0.95545 0.92057 1.70020 1.32377 1.05164 1.45588 0.84965 0.76183 0.77688 0.79331 1.18739 1.18647 1.19287 0.86797 0.88832 0.86061 0.85566 0.81906 0.81998 0.83204 0.87054 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.44 71.24 0.74 -0.45 16 2 C 0.07 1.98 7.30 88.64 0.65 2.62 16 3 N -0.48 -18.72 10.53 -181.81 -1.91 -20.63 16 4 C 0.07 3.03 6.88 40.19 0.28 3.31 16 5 C -0.21 -8.08 6.18 23.25 0.14 -7.93 16 6 S 0.25 5.98 20.63 -56.49 -1.17 4.81 16 7 C 0.12 4.71 6.57 42.21 0.28 4.99 16 8 C -0.06 -1.82 5.74 -20.05 -0.12 -1.93 16 9 C -0.11 -2.61 8.83 22.51 0.20 -2.41 16 10 C -0.11 -1.73 10.03 22.23 0.22 -1.50 16 11 C -0.10 -1.50 10.04 22.32 0.22 -1.27 16 12 C -0.12 -2.28 10.03 22.24 0.22 -2.06 16 13 C -0.10 -2.84 9.60 22.50 0.22 -2.62 16 14 N -0.25 -11.76 11.14 -48.10 -0.54 -12.30 16 15 N -0.29 -15.70 9.56 -52.87 -0.51 -16.20 16 16 C 0.07 3.70 7.11 85.57 0.61 4.31 16 17 S 0.15 8.46 21.65 -56.49 -1.22 7.24 16 18 C -0.57 -34.55 9.26 67.94 0.63 -33.92 16 19 H 0.10 5.90 6.56 -2.91 -0.02 5.88 16 20 C 0.03 1.91 5.49 84.84 0.47 2.38 16 21 N -0.90 -52.17 13.22 21.63 0.29 -51.89 16 22 Si 1.00 44.85 29.55 68.60 2.03 46.88 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.13 2.68 6.18 -2.91 -0.02 2.66 16 30 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.11 3.43 7.98 -2.91 -0.02 3.41 16 34 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.33 328.75 2.89 -76.44 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.16 Total: 2.13 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 4.76 Total: -36.49 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -2.67 Total: -101.02 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 14.44 SS G_CDS: -2.39 Total: 12.05 kcal Total: -79.33 2.89 -76.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012232843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.484 kcal (2) G-P(sol) polarization free energy of solvation -79.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds