Wall clock time and date at job start Tue Mar 31 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39650 * 120.14692 * 207.30917 * 3 2 1 5 5 C 1.37928 * 119.84445 * 180.29925 * 4 3 2 6 6 C 1.38384 * 120.15327 * 359.69971 * 5 4 3 7 7 C 1.38340 * 120.30385 * 359.97438 * 6 5 4 8 8 C 1.37970 * 120.15109 * 0.02779 * 7 6 5 9 9 S 1.76198 * 120.07773 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.39991 * 336.45357 * 9 8 7 11 11 O 1.42105 * 106.39994 * 203.53985 * 9 8 7 12 12 O 1.52192 * 107.22260 * 89.99950 * 9 8 7 13 13 C 1.35672 * 114.00537 * 74.99395 * 12 9 8 14 14 C 1.39320 * 119.81318 * 90.00041 * 13 12 9 15 15 C 1.36440 * 120.18380 * 180.25944 * 14 13 12 16 16 C 1.40837 * 119.80773 * 359.45756 * 15 14 13 17 17 C 1.41218 * 120.17528 * 180.25420 * 16 15 14 18 18 H 1.08003 * 119.99900 * 204.72191 * 17 16 15 19 19 C 1.39892 * 120.00136 * 24.72013 * 17 16 15 20 20 N 1.30882 * 119.99699 * 17.77743 * 19 17 16 21 21 Si 1.86795 * 120.00105 * 197.77306 * 19 17 16 22 22 H 1.48506 * 109.47332 * 90.00214 * 21 19 17 23 23 H 1.48504 * 109.47329 * 210.00225 * 21 19 17 24 24 H 1.48506 * 109.47349 * 330.00330 * 21 19 17 25 25 C 1.40826 * 119.64447 * 0.54108 * 16 15 14 26 26 C 1.36440 * 119.81067 * 359.73281 * 25 16 15 27 27 H 1.08001 * 120.07924 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.92508 * 179.72143 * 5 4 3 29 29 H 1.07994 * 119.84735 * 180.02562 * 6 5 4 30 30 H 1.07995 * 119.92543 * 180.02562 * 7 6 5 31 31 H 1.07999 * 119.90506 * 359.97438 * 14 13 12 32 32 H 1.08000 * 120.09344 * 179.70738 * 15 14 13 33 33 H 0.97005 * 119.99704 * 180.02562 * 20 19 17 34 34 H 1.07996 * 120.09683 * 179.70684 * 25 16 15 35 35 H 1.08006 * 119.90524 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.0740 0.5540 5 6 4.6481 1.0710 0.5452 6 6 5.3374 0.0048 -0.0055 7 6 4.6494 -1.0648 -0.5500 8 6 3.2698 -1.0748 -0.5478 9 16 2.3955 -2.4378 -1.2424 10 8 3.2788 -3.0490 -2.1726 11 8 1.1088 -1.9502 -1.5974 12 8 2.1788 -3.4499 -0.1266 13 6 1.2134 -3.0970 0.7589 14 6 -0.1062 -3.4841 0.5358 15 6 -1.0840 -3.1288 1.4186 16 6 -0.7542 -2.3784 2.5638 17 6 -1.7591 -2.0110 3.4855 18 1 -1.6233 -1.1443 4.1155 19 6 -2.9305 -2.7696 3.5823 20 7 -2.9647 -3.9853 3.0987 21 14 -4.4457 -2.0475 4.4021 22 1 -5.2753 -1.3529 3.3849 23 1 -5.2377 -3.1376 5.0264 24 1 -4.0288 -1.0779 5.4468 25 6 0.5821 -1.9911 2.7818 26 6 1.5470 -2.3498 1.8863 27 1 2.7322 1.9069 0.9838 28 1 5.1914 1.9025 0.9692 29 1 6.4173 0.0074 -0.0094 30 1 5.1935 -1.8938 -0.9777 31 1 -0.3566 -4.0631 -0.3408 32 1 -2.1072 -3.4257 1.2418 33 1 -3.7770 -4.5112 3.1655 34 1 0.8424 -1.4115 3.6551 35 1 2.5723 -2.0533 2.0518 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012601551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:38 Heat of formation + Delta-G solvation = -21.553676 kcal Electronic energy + Delta-G solvation = -25664.246109 eV Core-core repulsion = 21913.419198 eV Total energy + Delta-G solvation = -3750.826911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.90495 -39.40238 -37.05765 -36.84503 -35.72891 -35.39052 -33.79154 -31.57879 -31.37208 -29.94331 -29.53707 -25.52354 -24.13185 -23.32331 -21.97588 -21.43836 -19.79655 -19.17999 -17.87228 -17.68239 -17.06103 -16.84177 -15.68832 -15.63253 -15.30231 -14.63644 -14.39172 -14.21919 -14.08321 -13.80799 -13.04101 -12.92627 -12.56302 -12.50725 -12.41222 -12.29215 -12.19681 -12.10771 -12.05524 -11.59476 -11.58492 -11.42655 -11.37638 -11.29644 -11.01208 -10.68866 -10.47240 -10.14823 -9.66959 -9.52708 -9.40744 -9.04822 -7.89942 -7.66572 -7.14406 -4.69842 0.42790 0.80623 0.97428 2.38799 2.80508 2.89861 2.94412 2.94632 3.02519 3.20380 3.28094 3.68086 3.90965 4.03584 4.16833 4.25339 4.46036 4.74314 4.84283 5.08237 5.24811 5.36412 5.40904 5.65606 5.83506 5.89020 5.96246 6.00001 6.10005 6.19443 6.56965 6.65383 6.69511 6.83452 6.92000 7.23540 7.46927 7.68977 7.69204 7.87991 8.03232 8.25478 8.48473 8.57969 9.77715 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.018968 B = 0.004459 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.779778 B = 6277.911633 C = 7010.376283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C 0.200 3.800 3 C 0.102 3.898 4 C -0.102 4.102 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.020 4.020 8 C -0.655 4.655 9 S 2.629 3.371 10 O -0.960 6.960 11 O -0.950 6.950 12 O -0.628 6.628 13 C -0.107 4.107 14 C -0.057 4.057 15 C -0.151 4.151 16 C 0.129 3.871 17 C -0.425 4.425 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.917 3.083 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.213 4.213 26 C -0.074 4.074 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.290 0.710 34 H 0.105 0.895 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.176 7.236 -1.176 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N 0.001 4.999 2 C -0.117 4.117 3 C 0.098 3.902 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.145 4.145 7 C -0.038 4.038 8 C -0.739 4.739 9 S 2.725 3.275 10 O -0.958 6.958 11 O -0.948 6.948 12 O -0.587 6.587 13 C -0.153 4.153 14 C -0.077 4.077 15 C -0.171 4.171 16 C 0.124 3.876 17 C -0.454 4.454 18 H 0.106 0.894 19 C -0.151 4.151 20 N -0.388 5.388 21 Si 0.740 3.260 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.233 4.233 26 C -0.095 4.095 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.182 6.485 -1.761 11.378 hybrid contribution 0.403 0.684 0.556 0.969 sum 9.585 7.169 -1.205 12.030 Atomic orbital electron populations 1.81166 1.11224 1.03683 1.03858 1.25194 0.92362 0.97239 0.96904 1.15435 0.85007 0.93942 0.95777 1.21330 0.94527 0.97598 0.98812 1.21354 0.93717 0.97964 0.95723 1.21449 1.00627 0.93967 0.98499 1.20910 0.91484 0.98253 0.93195 1.31622 1.06748 1.19002 1.16494 1.04934 0.73859 0.73400 0.75275 1.93520 1.67437 1.74675 1.60197 1.93615 1.38131 1.80766 1.82257 1.85715 1.61378 1.60462 1.51183 1.17556 0.85382 1.17854 0.94491 1.20424 0.90901 0.97847 0.98577 1.20911 0.98497 1.03540 0.94136 1.17757 0.91267 0.87913 0.90637 1.19853 0.99245 1.09806 1.16454 0.89416 1.26120 1.00613 0.93937 0.94398 1.69826 1.29319 1.07177 1.32493 0.86146 0.79976 0.79817 0.80034 1.18731 1.19874 1.18206 1.20544 0.92678 1.09465 1.00650 1.20354 0.98398 0.97307 0.93468 0.84185 0.84483 0.84617 0.83619 0.88053 0.85506 0.89906 0.87689 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.32 -7.11 18.14 41.84 0.76 -6.35 16 2 C 0.20 3.84 10.33 -22.47 -0.23 3.60 16 3 C 0.10 1.60 5.03 -106.93 -0.54 1.06 16 4 C -0.10 -1.16 9.76 -39.17 -0.38 -1.55 16 5 C -0.07 -0.61 10.03 -39.64 -0.40 -1.01 16 6 C -0.13 -1.17 10.04 -39.49 -0.40 -1.57 16 7 C -0.02 -0.24 9.51 -39.64 -0.38 -0.62 16 8 C -0.66 -10.36 5.28 -39.17 -0.21 -10.56 16 9 S 2.63 50.96 5.28 -107.50 -0.57 50.39 16 10 O -0.96 -19.32 17.28 -66.81 -1.15 -20.48 16 11 O -0.95 -20.87 13.34 -66.81 -0.89 -21.76 16 12 O -0.63 -13.05 10.14 -50.85 -0.52 -13.57 16 13 C -0.11 -2.40 4.15 -38.78 -0.16 -2.56 16 14 C -0.06 -1.36 9.12 -39.83 -0.36 -1.73 16 15 C -0.15 -3.79 8.64 -39.25 -0.34 -4.13 16 16 C 0.13 3.17 5.57 -106.80 -0.60 2.58 16 17 C -0.43 -10.28 9.04 -37.83 -0.34 -10.62 16 18 H 0.09 2.00 7.91 -52.48 -0.41 1.59 16 19 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 20 N -0.77 -18.12 10.96 55.54 0.61 -17.51 16 21 Si 0.92 17.14 29.59 -169.99 -5.03 12.11 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 25 C -0.21 -4.76 9.74 -39.25 -0.38 -5.14 16 26 C -0.07 -1.57 7.12 -39.83 -0.28 -1.86 16 27 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 29 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.15 1.61 7.61 -52.49 -0.40 1.21 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.13 3.26 6.17 -52.49 -0.32 2.94 16 33 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 34 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.10 1.84 7.94 -52.48 -0.42 1.42 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -30.35 322.75 -9.82 -40.16 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -2.80 Total: 4.69 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -5.09 Total: -32.56 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 1.37 Total: -23.86 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.56 Total: -55.80 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.57 Total: 50.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.35 -9.82 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012601551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.609 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds