Wall clock time and date at job start Tue Mar 31 2020 05:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00265 * 2 1 4 4 C 1.38726 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 S 1.76196 * 119.94521 * 179.70060 * 6 5 4 8 8 O 1.42097 * 106.40564 * 203.53509 * 7 6 5 9 9 O 1.42103 * 106.40251 * 336.45766 * 7 6 5 10 10 N 1.65600 * 107.21994 * 89.99464 * 7 6 5 11 11 C 1.46497 * 120.00199 * 65.00095 * 10 7 6 12 12 H 1.09003 * 109.46852 * 335.00043 * 11 10 7 13 13 C 1.52996 * 109.47121 * 94.99958 * 11 10 7 14 14 C 1.50707 * 109.47350 * 215.00467 * 11 10 7 15 15 O 1.21210 * 119.99777 * 359.97438 * 14 11 10 16 16 O 1.34311 * 119.99591 * 179.97438 * 14 11 10 17 17 C 1.34922 * 116.99333 * 179.97438 * 16 14 11 18 18 H 1.08001 * 120.00641 * 359.97438 * 17 16 14 19 19 C 1.38758 * 119.99852 * 180.02562 * 17 16 14 20 20 N 1.31443 * 119.99873 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99864 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47129 * 90.00065 * 21 19 17 23 23 H 1.48494 * 109.47209 * 210.00051 * 21 19 17 24 24 H 1.48501 * 109.47149 * 330.00476 * 21 19 17 25 25 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 26 26 C 1.38144 * 120.05928 * 0.55731 * 25 6 5 27 27 H 1.08997 * 109.47423 * 299.99641 * 1 2 3 28 28 H 1.08995 * 109.47128 * 59.99997 * 1 2 3 29 29 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.02799 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 32 32 H 0.97002 * 120.00054 * 245.00677 * 10 7 6 33 33 H 1.09001 * 109.47177 * 300.00162 * 13 11 10 34 34 H 1.08995 * 109.47415 * 60.00492 * 13 11 10 35 35 H 1.09001 * 109.47014 * 180.02562 * 13 11 10 36 36 H 0.97001 * 119.99906 * 179.97438 * 20 19 17 37 37 H 1.08007 * 119.96975 * 180.26053 * 25 6 5 38 38 H 1.08006 * 120.02939 * 179.70744 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0070 7 16 4.1018 5.2457 0.0157 8 8 3.1703 6.1677 0.5646 9 8 5.3973 5.0329 0.5594 10 7 4.3250 5.6909 -1.5637 11 6 3.1668 5.9543 -2.4211 12 1 2.3023 5.4095 -2.0416 13 6 2.8640 7.4540 -2.4227 14 6 3.4686 5.5012 -3.8264 15 8 4.5448 5.0076 -4.0860 16 8 2.5451 5.6444 -4.7911 17 6 2.8795 5.2189 -6.0270 18 1 3.8532 4.7867 -6.2044 19 6 1.9726 5.3374 -7.0705 20 7 2.2985 4.9233 -8.2747 21 14 0.2886 6.0855 -6.7639 22 1 0.3519 7.5531 -6.9814 23 1 -0.6964 5.4883 -7.7011 24 1 -0.1284 5.8099 -5.3656 25 6 1.9211 3.6047 0.0008 26 6 1.2915 2.3750 0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0208 0.3799 0.0005 31 1 5.1346 2.5749 0.0019 32 1 5.2226 5.7771 -1.9211 33 1 2.6457 7.7817 -1.4063 34 1 3.7284 7.9988 -2.8023 35 1 2.0020 7.6500 -3.0604 36 1 1.6644 5.0058 -9.0041 37 1 1.3342 4.5114 0.0012 38 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014767585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:22 Heat of formation + Delta-G solvation = -157.647813 kcal Electronic energy + Delta-G solvation = -26254.192811 eV Core-core repulsion = 22190.155496 eV Total energy + Delta-G solvation = -4064.037315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44543 -39.50073 -37.75242 -37.28464 -36.26727 -35.86595 -34.73894 -32.39933 -31.49840 -30.66947 -29.91978 -27.73852 -25.91006 -23.72289 -23.24363 -22.78940 -20.16869 -19.67683 -18.67678 -18.13557 -18.09624 -17.35662 -16.72085 -16.44429 -16.11787 -16.01718 -15.12765 -14.99246 -14.91950 -14.55107 -14.10952 -13.84528 -13.74306 -13.51198 -13.18127 -13.15133 -12.60790 -12.47289 -12.35536 -12.22224 -12.11408 -12.02082 -11.66922 -11.60916 -11.45257 -11.28554 -11.24536 -11.04134 -10.58720 -10.44676 -9.81014 -9.79272 -9.34840 -9.17015 -8.85844 -8.76338 -6.44965 -4.21364 0.34315 0.72213 1.04320 2.81002 2.86736 3.02440 3.17859 3.25343 3.27934 3.31367 3.74049 4.00220 4.16997 4.24014 4.43522 4.56413 4.74536 4.81198 4.89865 4.96775 5.03709 5.09522 5.14991 5.24746 5.26532 5.38368 5.62806 5.69491 5.82016 5.87623 5.92604 6.04111 6.28532 6.35504 6.42392 6.95070 7.01883 7.62146 7.95233 8.49491 8.92160 9.55509 10.63182 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010375 B = 0.004620 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.237209 B = 6058.498010 C = 7648.540942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.312 6.312 3 C 0.182 3.818 4 C -0.172 4.172 5 C 0.025 3.975 6 C -0.717 4.717 7 S 2.703 3.297 8 O -0.956 6.956 9 O -0.959 6.959 10 N -1.096 6.096 11 C 0.172 3.828 12 H 0.106 0.894 13 C -0.166 4.166 14 C 0.403 3.597 15 O -0.529 6.529 16 O -0.245 6.245 17 C -0.383 4.383 18 H 0.110 0.890 19 C 0.068 3.932 20 N -0.871 5.871 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.259 1.259 25 C 0.018 3.982 26 C -0.229 4.229 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.427 0.573 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.280 0.720 37 H 0.145 0.855 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -4.301 17.956 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.224 6.224 3 C 0.135 3.865 4 C -0.191 4.191 5 C 0.006 3.994 6 C -0.804 4.804 7 S 2.792 3.208 8 O -0.946 6.946 9 O -0.949 6.949 10 N -0.858 5.858 11 C 0.063 3.937 12 H 0.123 0.877 13 C -0.225 4.225 14 C 0.246 3.754 15 O -0.424 6.424 16 O -0.153 6.153 17 C -0.458 4.458 18 H 0.128 0.872 19 C -0.137 4.137 20 N -0.510 5.510 21 Si 0.728 3.272 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.001 4.001 26 C -0.248 4.248 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.265 0.735 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.163 0.837 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.408 -4.207 18.436 19.416 hybrid contribution -0.941 -0.413 -0.737 1.265 sum -5.349 -4.620 17.698 19.057 Atomic orbital electron populations 1.23187 0.77633 1.04483 1.01958 1.86108 1.22130 1.26783 1.87377 1.19340 0.92611 0.84299 0.90250 1.20555 0.91464 0.99030 1.08066 1.20744 1.00199 0.90190 0.88314 1.30834 1.05093 1.21708 1.22786 1.01605 0.73465 0.73665 0.72024 1.93582 1.64755 1.60185 1.76053 1.93586 1.38769 1.86445 1.76111 1.55406 1.15324 1.84751 1.30300 1.19974 0.87702 0.98401 0.87642 0.87678 1.22268 1.03517 0.92794 1.03960 1.22827 0.84156 0.80975 0.87422 1.90599 1.25214 1.44029 1.82533 1.83492 1.42415 1.70238 1.19130 1.20651 1.04187 1.40802 0.80187 0.87213 1.24546 0.99285 0.96152 0.93694 1.69603 1.36830 1.44426 1.00157 0.86254 0.82136 0.79646 0.79157 1.19655 1.20730 1.18296 1.20761 0.92280 0.98401 0.88640 1.21355 1.00639 0.92224 1.10602 0.92217 0.91914 0.87803 0.84098 0.83385 0.73525 0.90209 0.91274 0.89934 0.90931 0.83724 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.36 10.50 -19.42 -0.20 -3.56 16 3 C 0.18 2.16 6.69 -39.22 -0.26 1.90 16 4 C -0.17 -2.06 9.99 -39.43 -0.39 -2.45 16 5 C 0.02 0.31 9.52 -39.60 -0.38 -0.06 16 6 C -0.72 -9.38 5.82 -39.56 -0.23 -9.61 16 7 S 2.70 36.93 5.65 -107.50 -0.61 36.33 16 8 O -0.96 -14.06 16.54 -57.17 -0.95 -15.00 16 9 O -0.96 -14.84 17.28 -57.17 -0.99 -15.83 16 10 N -1.10 -15.92 5.26 -5.88 -0.03 -15.95 16 11 C 0.17 2.77 3.29 -69.08 -0.23 2.54 16 12 H 0.11 1.44 7.21 -51.93 -0.37 1.07 16 13 C -0.17 -2.35 9.45 37.16 0.35 -2.00 16 14 C 0.40 8.84 7.27 36.01 0.26 9.10 16 15 O -0.53 -13.09 15.23 -19.05 -0.29 -13.38 16 16 O -0.25 -6.08 8.48 -20.71 -0.18 -6.26 16 17 C -0.38 -10.94 10.10 30.92 0.31 -10.62 16 18 H 0.11 3.48 7.09 -52.49 -0.37 3.11 16 19 C 0.07 1.87 5.49 -17.53 -0.10 1.77 16 20 N -0.87 -25.11 13.96 55.48 0.77 -24.33 16 21 Si 0.90 20.45 28.62 -169.99 -4.86 15.59 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 25 C 0.02 0.22 8.87 -39.61 -0.35 -0.13 16 26 C -0.23 -2.55 9.04 -39.43 -0.36 -2.91 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.15 1.63 7.61 -52.49 -0.40 1.23 16 32 H 0.43 6.11 8.21 -34.47 -0.28 5.83 16 33 H 0.08 0.99 7.64 -51.93 -0.40 0.59 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 36 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.15 1.46 7.62 -52.48 -0.40 1.06 16 38 H 0.14 1.15 6.30 -52.48 -0.33 0.82 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -35.45 345.93 -6.67 -42.12 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.18 Total: 6.40 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.38 Total: -11.32 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.74 Total: -40.29 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -2.60 Total: -54.04 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.86 Total: 15.59 kcal Atomic # 16 Polarization: 36.93 SS G_CDS: -0.61 Total: 36.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.45 -6.67 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014767585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.529 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds