Wall clock time and date at job start Tue Mar 31 2020 04:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99623 * 2 1 4 4 H 1.48498 * 109.47032 * 269.99494 * 3 2 1 5 5 H 1.48501 * 109.46932 * 30.00000 * 3 2 1 6 6 H 1.48502 * 109.47045 * 149.99873 * 3 2 1 7 7 C 1.37879 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99602 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46711 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00176 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99408 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00346 * 179.97438 * 11 10 9 14 14 S 1.81399 * 109.47282 * 179.97438 * 13 11 10 15 15 C 1.76203 * 103.00367 * 180.02562 * 14 13 11 16 16 C 1.38952 * 120.08029 * 359.97438 * 15 14 13 17 17 C 1.38089 * 119.92978 * 180.02562 * 16 15 14 18 18 C 1.38315 * 120.09232 * 359.97438 * 17 16 15 19 19 C 1.38280 * 120.16694 * 0.02562 * 18 17 16 20 20 C 1.38175 * 120.07067 * 359.97438 * 19 18 17 21 21 Br 1.89104 * 120.04543 * 180.02562 * 20 19 18 22 22 H 0.96990 * 120.00382 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46941 * 60.00088 * 9 7 2 24 24 H 1.09001 * 109.47056 * 299.99404 * 9 7 2 25 25 H 0.97009 * 120.00394 * 359.97438 * 10 9 7 26 26 H 1.09008 * 109.47381 * 60.00234 * 13 11 10 27 27 H 1.08998 * 109.47349 * 300.00092 * 13 11 10 28 28 H 1.08003 * 120.03715 * 0.04407 * 16 15 14 29 29 H 1.08005 * 119.95140 * 180.27643 * 17 16 15 30 30 H 1.08003 * 119.91246 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.96662 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6125 0.0018 11 6 1.7541 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7334 -6.0286 0.0022 14 16 1.8265 -7.5997 0.0023 15 6 3.1152 -8.8013 0.0039 16 6 4.4446 -8.3969 0.0041 17 6 5.4521 -9.3413 0.0048 18 6 5.1396 -10.6887 0.0058 19 6 3.8180 -11.0955 0.0056 20 6 2.8045 -10.1564 0.0049 21 35 0.9974 -10.7135 0.0053 22 1 -0.4850 0.8399 -0.0004 23 1 0.6249 -2.5571 -0.8896 24 1 0.6242 -2.5568 0.8904 25 1 3.1569 -3.4353 0.0021 26 1 3.3595 -5.9709 0.8926 27 1 3.3607 -5.9709 -0.8874 28 1 4.6897 -7.3451 0.0041 29 1 6.4855 -9.0273 0.0095 30 1 5.9299 -11.4248 0.0060 31 1 3.5777 -12.1484 0.0068 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016360625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:30 Heat of formation + Delta-G solvation = -15.534167 kcal Electronic energy + Delta-G solvation = -16498.745526 eV Core-core repulsion = 13531.319105 eV Total energy + Delta-G solvation = -2967.426421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 328.983 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29841 -38.87495 -34.32668 -32.68358 -32.47070 -31.66705 -29.96019 -29.39299 -26.89378 -23.21461 -22.97869 -22.35301 -19.99206 -18.25842 -17.02528 -16.50138 -15.78165 -15.70597 -15.31784 -15.27546 -14.72514 -14.14148 -13.82171 -13.77765 -13.61813 -12.95930 -12.78222 -12.03801 -11.82014 -11.70752 -11.58955 -11.10019 -11.01898 -10.93159 -10.69548 -10.37404 -10.00760 -9.92556 -9.47296 -9.33635 -9.07001 -8.81340 -8.03505 -7.50459 -6.22002 -4.29793 0.75473 0.89115 1.22129 1.44051 2.32574 3.11360 3.20830 3.24802 3.27008 3.29217 3.88921 4.30402 4.42706 4.61855 4.90230 4.97064 4.98578 5.08854 5.14344 5.18631 5.36143 5.45823 5.71977 5.85168 6.07141 6.42325 7.19376 7.26358 7.43053 7.56532 7.89337 8.44948 8.66409 8.91489 9.36705 10.88116 Molecular weight = 328.98amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.002647 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.926399 B =10577.318053 C =11585.797603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.704 5.704 11 C 0.516 3.484 12 O -0.535 6.535 13 C -0.163 4.163 14 S 0.008 5.992 15 C -0.077 4.077 16 C -0.135 4.135 17 C -0.083 4.083 18 C -0.130 4.130 19 C -0.072 4.072 20 C -0.082 4.082 21 Br -0.034 7.034 22 H 0.267 0.733 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.392 0.608 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -23.861 0.017 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.353 5.353 11 C 0.298 3.702 12 O -0.414 6.414 13 C -0.315 4.315 14 S 0.255 5.745 15 C -0.193 4.193 16 C -0.160 4.160 17 C -0.103 4.103 18 C -0.152 4.152 19 C -0.093 4.093 20 C -0.169 4.169 21 Br 0.052 6.948 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.225 0.775 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.062 -24.055 0.022 25.370 hybrid contribution 2.840 1.350 -0.009 3.144 sum 10.902 -22.705 0.013 25.187 Atomic orbital electron populations 1.69966 1.06122 1.27452 1.48564 1.24954 0.94927 0.99492 0.94591 0.86398 0.79601 0.82557 0.78260 1.20416 1.20943 1.19729 1.21194 0.93267 0.90327 1.53646 0.91835 1.19186 0.88197 0.81625 0.98042 1.46393 1.11404 1.05515 1.71955 1.19400 0.88538 0.83743 0.78517 1.90729 1.16085 1.84226 1.50333 1.24066 1.03295 0.96846 1.07312 1.86747 1.04665 0.93441 1.89631 1.22218 0.98590 0.96613 1.01896 1.21252 0.90932 1.00458 1.03396 1.21202 0.99313 0.92952 0.96863 1.21141 0.95829 0.96183 1.02042 1.21063 0.91829 0.98900 0.97515 1.21300 0.91709 0.93445 1.10463 1.96753 1.10719 1.89801 1.97479 0.92332 0.95245 0.95243 0.77497 0.86869 0.86866 0.84988 0.85149 0.85080 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.70 -14.16 5.55 -61.48 -0.34 -14.50 16 11 C 0.52 9.95 7.85 -10.99 -0.09 9.86 16 12 O -0.54 -12.70 15.87 5.55 0.09 -12.61 16 13 C -0.16 -2.22 4.82 36.00 0.17 -2.05 16 14 S 0.01 0.12 19.73 -107.50 -2.12 -2.00 16 15 C -0.08 -0.95 6.11 -39.03 -0.24 -1.18 16 16 C -0.14 -1.35 9.36 -39.37 -0.37 -1.72 16 17 C -0.08 -0.67 10.04 -39.61 -0.40 -1.07 16 18 C -0.13 -1.00 10.04 -39.54 -0.40 -1.39 16 19 C -0.07 -0.65 9.78 -39.59 -0.39 -1.04 16 20 C -0.08 -0.95 6.24 -39.31 -0.25 -1.20 16 21 Br -0.03 -0.40 32.39 -68.01 -2.20 -2.60 16 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.39 6.55 8.32 -40.82 -0.34 6.21 16 26 H 0.11 1.25 7.75 -51.92 -0.40 0.85 16 27 H 0.11 1.25 7.75 -51.93 -0.40 0.85 16 28 H 0.13 1.12 5.88 -52.48 -0.31 0.81 16 29 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -32.06 308.16 -9.71 -41.77 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.10 Total: 1.29 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.39 Total: -6.47 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.40 Total: -39.49 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.12 Total: -2.00 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.20 Total: -2.60 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.06 -9.71 -41.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016360625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.236 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds