Wall clock time and date at job start Tue Mar 31 2020 04:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99623 * 2 1 4 4 H 1.48498 * 109.47032 * 269.99494 * 3 2 1 5 5 H 1.48501 * 109.46932 * 30.00000 * 3 2 1 6 6 H 1.48502 * 109.47045 * 149.99873 * 3 2 1 7 7 C 1.37879 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99602 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46711 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00176 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99408 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00346 * 179.97438 * 11 10 9 14 14 S 1.81399 * 109.47282 * 179.97438 * 13 11 10 15 15 C 1.76203 * 103.00367 * 180.02562 * 14 13 11 16 16 C 1.38952 * 120.08029 * 359.97438 * 15 14 13 17 17 C 1.38089 * 119.92978 * 180.02562 * 16 15 14 18 18 C 1.38315 * 120.09232 * 359.97438 * 17 16 15 19 19 C 1.38280 * 120.16694 * 0.02562 * 18 17 16 20 20 C 1.38175 * 120.07067 * 359.97438 * 19 18 17 21 21 Br 1.89104 * 120.04543 * 180.02562 * 20 19 18 22 22 H 0.96990 * 120.00382 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46941 * 60.00088 * 9 7 2 24 24 H 1.09001 * 109.47056 * 299.99404 * 9 7 2 25 25 H 0.97009 * 120.00394 * 359.97438 * 10 9 7 26 26 H 1.09008 * 109.47381 * 60.00234 * 13 11 10 27 27 H 1.08998 * 109.47349 * 300.00092 * 13 11 10 28 28 H 1.08003 * 120.03715 * 0.04407 * 16 15 14 29 29 H 1.08005 * 119.95140 * 180.27643 * 17 16 15 30 30 H 1.08003 * 119.91246 * 179.97438 * 18 17 16 31 31 H 1.07997 * 119.96662 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6125 0.0018 11 6 1.7541 -4.8833 0.0015 12 8 0.5616 -5.1050 0.0006 13 6 2.7334 -6.0286 0.0022 14 16 1.8265 -7.5997 0.0023 15 6 3.1152 -8.8013 0.0039 16 6 4.4446 -8.3969 0.0041 17 6 5.4521 -9.3413 0.0048 18 6 5.1396 -10.6887 0.0058 19 6 3.8180 -11.0955 0.0056 20 6 2.8045 -10.1564 0.0049 21 35 0.9974 -10.7135 0.0053 22 1 -0.4850 0.8399 -0.0004 23 1 0.6249 -2.5571 -0.8896 24 1 0.6242 -2.5568 0.8904 25 1 3.1569 -3.4353 0.0021 26 1 3.3595 -5.9709 0.8926 27 1 3.3607 -5.9709 -0.8874 28 1 4.6897 -7.3451 0.0041 29 1 6.4855 -9.0273 0.0095 30 1 5.9299 -11.4248 0.0060 31 1 3.5777 -12.1484 0.0068 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016360625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:30 Heat of formation + Delta-G solvation = -36.288989 kcal Electronic energy + Delta-G solvation = -16499.645522 eV Core-core repulsion = 13531.319105 eV Total energy + Delta-G solvation = -2968.326417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 328.983 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54266 -40.00124 -36.22303 -34.43382 -33.44218 -32.48986 -31.28185 -30.15986 -28.77733 -24.76062 -23.91821 -23.33542 -21.63127 -19.43083 -18.53453 -17.67340 -17.32805 -16.91143 -16.74520 -16.41854 -16.01457 -15.40981 -14.87512 -14.85384 -14.43538 -14.34118 -14.21829 -13.99369 -13.47979 -12.95715 -12.71861 -12.54988 -12.27929 -12.20724 -11.89430 -11.59523 -11.50078 -11.01800 -10.85826 -10.83226 -10.78984 -9.92521 -9.81327 -8.53543 -8.29964 -6.46912 0.02195 0.19483 0.19934 0.59885 1.35677 1.43803 1.45943 1.57158 1.57837 2.28478 2.49398 2.57154 3.05374 3.73061 3.77835 3.96436 4.05445 4.13986 4.33545 4.35580 4.46926 4.81117 5.03621 5.08171 5.21305 5.24304 5.42123 5.42574 5.62386 5.80664 5.81934 6.62761 6.76065 7.20607 7.37069 8.82237 Molecular weight = 328.98amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.002647 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.926399 B =10577.318053 C =11585.797603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.512 3.488 12 O -0.586 6.586 13 C -0.137 4.137 14 S -0.064 6.064 15 C -0.089 4.089 16 C -0.140 4.140 17 C -0.080 4.080 18 C -0.118 4.118 19 C -0.078 4.078 20 C -0.100 4.100 21 Br -0.052 7.052 22 H 0.269 0.731 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.413 0.587 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.442 -24.391 0.029 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.347 5.347 11 C 0.298 3.702 12 O -0.467 6.467 13 C -0.288 4.288 14 S 0.181 5.819 15 C -0.204 4.204 16 C -0.165 4.165 17 C -0.099 4.099 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.186 4.186 21 Br 0.034 6.966 22 H 0.078 0.922 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.249 0.751 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.166 0.834 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.483 -24.631 0.034 27.614 hybrid contribution 1.551 1.348 -0.014 2.055 sum 14.034 -23.283 0.020 27.186 Atomic orbital electron populations 1.70135 1.08334 1.28619 1.49904 1.26076 0.95751 1.03964 0.93853 0.85151 0.78539 0.76915 0.78584 1.19635 1.21150 1.17699 1.21612 0.94427 0.90356 1.52954 0.89473 1.18600 0.88646 0.84072 0.94351 1.46054 1.11557 1.04821 1.72307 1.20297 0.88911 0.84537 0.76481 1.90711 1.18910 1.85071 1.52016 1.23841 1.01422 0.93144 1.10413 1.87015 1.08057 0.95743 1.91114 1.22049 0.98308 0.95631 1.04451 1.21556 0.90184 1.01914 1.02807 1.21637 1.00440 0.92688 0.95183 1.21616 0.95872 0.97030 0.99436 1.21375 0.92017 0.99388 0.97087 1.21505 0.91506 0.93895 1.11691 1.96729 1.12516 1.89751 1.97591 0.92242 0.99251 0.99244 0.75093 0.83585 0.83578 0.83444 0.81813 0.81630 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 41.52 29.54 68.60 2.03 43.55 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.56 -29.47 9.28 25.60 0.24 -29.23 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.33 5.43 85.64 0.46 14.79 16 10 N -0.70 -28.08 5.55 -466.80 -2.59 -30.67 16 11 C 0.51 19.96 7.85 87.65 0.69 20.65 16 12 O -0.59 -29.19 15.87 -3.05 -0.05 -29.24 16 13 C -0.14 -3.51 4.82 71.23 0.34 -3.17 16 14 S -0.06 -1.92 19.73 -56.49 -1.11 -3.04 16 15 C -0.09 -2.05 6.11 22.63 0.14 -1.91 16 16 C -0.14 -2.33 9.36 22.41 0.21 -2.12 16 17 C -0.08 -0.92 10.04 22.25 0.22 -0.69 16 18 C -0.12 -1.30 10.04 22.30 0.22 -1.08 16 19 C -0.08 -1.20 9.78 22.26 0.22 -0.99 16 20 C -0.10 -2.20 6.24 22.44 0.14 -2.06 16 21 Br -0.05 -1.25 32.39 -20.37 -0.66 -1.91 16 22 H 0.27 15.06 8.31 -92.72 -0.77 14.29 16 23 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 24 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H 0.41 13.04 8.32 -92.70 -0.77 12.27 16 26 H 0.15 2.78 7.75 -2.39 -0.02 2.76 16 27 H 0.15 2.78 7.75 -2.39 -0.02 2.76 16 28 H 0.15 1.88 5.88 -2.91 -0.02 1.87 16 29 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 30 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -74.54 308.16 1.64 -72.90 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.39 Total: 9.11 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 3.35 Total: -5.16 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -2.30 Total: -86.21 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -1.11 Total: -3.04 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.66 Total: -1.91 kcal Total: -74.54 1.64 -72.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016360625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.610 kcal (2) G-P(sol) polarization free energy of solvation -74.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds