Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47146 * 281.94054 * 3 2 1 5 5 N 1.46498 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.33994 * 125.47761 * 269.99838 * 5 4 3 7 7 S 1.71201 * 123.05604 * 0.02562 * 6 5 4 8 8 N 1.33993 * 113.88529 * 180.02562 * 6 5 4 9 9 C 1.46502 * 125.47413 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47022 * 270.04163 * 9 8 6 11 11 H 1.08005 * 120.00203 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00175 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99800 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00583 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47221 * 89.99652 * 14 12 10 16 16 H 1.48495 * 109.47642 * 210.00551 * 14 12 10 17 17 H 1.48507 * 109.46681 * 330.00117 * 14 12 10 18 18 C 1.47125 * 109.05314 * 0.02562 * 8 6 5 19 19 H 1.09003 * 110.30576 * 241.71245 * 18 8 6 20 20 C 1.54083 * 109.66928 * 120.04350 * 18 8 6 21 21 S 1.83780 * 102.99676 * 270.13701 * 20 18 8 22 22 O 1.42106 * 109.81016 * 77.48814 * 21 20 18 23 23 O 1.42096 * 109.81166 * 211.84001 * 21 20 18 24 24 C 1.83779 * 94.23179 * 324.66734 * 21 20 18 25 25 C 1.47128 * 125.46758 * 90.00368 * 5 4 3 26 26 H 1.09002 * 110.30504 * 298.26715 * 25 5 4 27 27 H 1.09001 * 109.47244 * 161.94047 * 3 2 1 28 28 H 1.08998 * 109.47001 * 41.93668 * 3 2 1 29 29 H 1.09001 * 109.47054 * 59.99877 * 4 3 2 30 30 H 1.09003 * 109.47223 * 300.00327 * 4 3 2 31 31 H 1.09001 * 109.47092 * 30.04015 * 9 8 6 32 32 H 1.08999 * 109.47022 * 150.04013 * 9 8 6 33 33 H 0.97004 * 120.00067 * 179.97438 * 13 12 10 34 34 H 1.09003 * 110.70457 * 28.51506 * 20 18 8 35 35 H 1.08996 * 110.70940 * 151.58048 * 20 18 8 36 36 H 1.09000 * 110.25517 * 277.17277 * 24 21 20 37 37 H 1.08999 * 111.16685 * 153.92960 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.2976 1.4113 5 7 4.5831 -0.2975 1.4112 6 6 5.3608 -1.3651 1.1855 7 16 4.7343 -2.9238 0.8556 8 7 6.6734 -1.1017 1.2416 9 6 7.7460 -2.0782 1.0358 10 6 8.1126 -2.7071 2.3553 11 1 7.5983 -2.4090 3.2570 12 6 9.1045 -3.6631 2.4114 13 7 9.7310 -4.0258 1.3134 14 14 9.5594 -4.4424 4.0470 15 1 8.7258 -5.6512 4.2683 16 1 10.9938 -4.8264 4.0305 17 1 9.3203 -3.4688 5.1426 18 6 6.8644 0.3254 1.5442 19 1 7.3941 0.8174 0.7284 20 6 7.6518 0.4756 2.8601 21 16 6.3261 0.5227 4.1320 22 8 5.8396 -0.7913 4.3694 23 8 6.7303 1.3438 5.2189 24 6 5.1455 1.4402 3.0634 25 6 5.4368 0.8749 1.6589 26 1 5.2619 1.6373 0.8998 27 1 2.9709 0.9779 -0.3186 28 1 2.9716 -0.7636 -0.6868 29 1 2.7552 -1.2748 1.7299 30 1 2.7544 0.4667 2.0982 31 1 7.4063 -2.8513 0.3467 32 1 8.6187 -1.5765 0.6175 33 1 10.4291 -4.6981 1.3529 34 1 8.3067 -0.3814 3.0173 35 1 8.2251 1.4026 2.8625 36 1 5.3560 2.5091 3.0996 37 1 4.1142 1.2394 3.3535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016711663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = 13.582898 kcal Electronic energy + Delta-G solvation = -24725.627205 eV Core-core repulsion = 21144.060633 eV Total energy + Delta-G solvation = -3581.566572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44710 -37.24584 -37.02087 -36.00144 -35.71258 -34.08708 -32.83584 -31.65720 -29.41674 -27.82906 -25.97033 -24.95738 -22.91957 -21.33712 -21.10481 -18.98470 -18.25961 -17.43760 -16.86957 -16.82877 -16.69052 -16.15163 -15.56063 -15.17949 -15.07016 -14.80966 -14.63726 -14.16329 -13.86846 -13.47304 -13.04893 -12.99285 -12.79489 -12.73125 -12.53635 -12.44089 -12.27790 -12.08010 -12.00729 -11.72602 -11.52920 -11.27269 -10.96491 -10.83821 -10.74542 -10.50320 -10.46219 -10.18635 -9.74391 -8.57984 -8.45852 -7.11424 -6.73769 -6.20788 -4.26343 -0.09839 1.86481 2.02465 2.31866 2.58255 2.60852 3.02494 3.27233 3.28307 3.35128 3.39561 3.45796 3.64000 3.79499 3.88161 4.05251 4.25455 4.36707 4.42467 4.59817 4.68546 4.80211 4.93631 4.99528 5.08993 5.15564 5.23505 5.33489 5.63085 5.76265 5.89774 6.39547 6.72077 7.07519 7.35487 7.39567 7.56101 7.77787 7.94165 8.77586 9.39890 10.86956 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.005602 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.158765 B = 4996.926035 C = 6328.212911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.215 3.785 3 C -0.045 4.045 4 C 0.145 3.855 5 N -0.593 5.593 6 C 0.556 3.444 7 S -0.626 6.626 8 N -0.536 5.536 9 C 0.258 3.742 10 C -0.537 4.537 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.887 5.887 14 Si 0.895 3.105 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.115 3.885 19 H 0.126 0.874 20 C -0.591 4.591 21 S 2.367 3.633 22 O -0.893 6.893 23 O -0.937 6.937 24 C -0.605 4.605 25 C 0.122 3.878 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.179 0.821 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 17.599 -0.910 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.103 4.103 3 C -0.086 4.086 4 C 0.021 3.979 5 N -0.309 5.309 6 C 0.200 3.800 7 S -0.493 6.493 8 N -0.243 5.243 9 C 0.141 3.859 10 C -0.576 4.576 11 H 0.089 0.911 12 C -0.132 4.132 13 N -0.525 5.525 14 Si 0.722 3.278 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.197 1.197 18 C 0.006 3.994 19 H 0.144 0.856 20 C -0.721 4.721 21 S 2.548 3.452 22 O -0.890 6.890 23 O -0.934 6.934 24 C -0.733 4.733 25 C 0.013 3.987 26 H 0.143 0.857 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.196 0.804 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.968 16.155 -0.247 17.596 hybrid contribution 1.216 0.741 0.206 1.439 sum -5.752 16.896 -0.041 17.849 Atomic orbital electron populations 1.81244 1.12878 1.09027 1.07974 1.28802 0.94810 0.93058 0.93631 1.19669 0.82003 1.06052 1.00919 1.21300 0.75329 1.06265 0.95033 1.47263 1.05849 1.06441 1.71352 1.22338 0.84356 0.92133 0.81187 1.93228 1.78792 1.07167 1.70093 1.48495 1.05088 1.08090 1.62606 1.19824 0.81036 0.85657 0.99340 1.21358 1.19384 1.23410 0.93445 0.91101 1.24839 0.95745 0.95721 0.96905 1.69908 1.24248 1.31195 1.27121 0.86528 0.77400 0.80414 0.83428 1.19990 1.21120 1.19700 1.22238 0.93119 0.85435 0.98611 0.85608 1.30972 1.16355 1.14196 1.10588 1.09935 0.80183 0.76957 0.78134 1.93765 1.77851 1.33695 1.83671 1.93611 1.81009 1.69850 1.48972 1.30935 1.18209 1.14327 1.09867 1.22306 0.89134 0.90593 0.96639 0.85728 0.87359 0.85759 0.86388 0.89100 0.90808 0.93671 0.92386 0.80364 0.83543 0.83141 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.61 18.54 42.15 0.78 -4.83 16 2 C 0.22 2.12 15.43 -20.76 -0.32 1.80 16 3 C -0.04 -0.32 6.03 -29.52 -0.18 -0.50 16 4 C 0.14 1.32 5.54 -4.04 -0.02 1.30 16 5 N -0.59 -6.79 2.68 -167.17 -0.45 -7.24 16 6 C 0.56 9.53 7.62 -88.32 -0.67 8.86 16 7 S -0.63 -13.91 28.59 -107.50 -3.07 -16.98 16 8 N -0.54 -9.11 2.68 -168.60 -0.45 -9.56 16 9 C 0.26 5.67 5.25 -5.20 -0.03 5.64 16 10 C -0.54 -13.45 7.76 -34.44 -0.27 -13.72 16 11 H 0.07 1.82 7.14 -52.48 -0.37 1.45 16 12 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 13 N -0.89 -24.12 13.29 55.43 0.74 -23.39 16 14 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 1.24 3.85 -66.82 -0.26 0.98 16 19 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.59 -6.56 6.98 37.72 0.26 -6.30 16 21 S 2.37 29.57 6.07 -107.50 -0.65 28.92 16 22 O -0.89 -16.09 17.81 -57.66 -1.03 -17.11 16 23 O -0.94 -13.73 18.16 -57.66 -1.05 -14.77 16 24 C -0.60 -4.02 6.99 37.77 0.26 -3.76 16 25 C 0.12 0.95 3.86 -66.76 -0.26 0.69 16 26 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.12 1.40 7.35 -51.93 -0.38 1.02 16 30 H 0.09 0.53 6.86 -51.93 -0.36 0.18 16 31 H 0.07 1.88 7.35 -51.93 -0.38 1.50 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.18 2.66 5.68 -51.93 -0.29 2.37 16 35 H 0.15 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.15 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.14 0.82 6.63 -51.93 -0.34 0.47 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -38.51 339.76 -10.88 -49.40 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.23 Total: -2.31 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.57 Total: -3.23 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.62 Total: -45.02 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -2.07 Total: -31.89 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 15.66 SS G_CDS: -3.73 Total: 11.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -38.51 -10.88 -49.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016711663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.981 kcal (2) G-P(sol) polarization free energy of solvation -38.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds