Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47146 * 281.94054 * 3 2 1 5 5 N 1.46498 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.33994 * 125.47761 * 269.99838 * 5 4 3 7 7 S 1.71201 * 123.05604 * 0.02562 * 6 5 4 8 8 N 1.33993 * 113.88529 * 180.02562 * 6 5 4 9 9 C 1.46502 * 125.47413 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47022 * 270.04163 * 9 8 6 11 11 H 1.08005 * 120.00203 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00175 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99800 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00583 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47221 * 89.99652 * 14 12 10 16 16 H 1.48495 * 109.47642 * 210.00551 * 14 12 10 17 17 H 1.48507 * 109.46681 * 330.00117 * 14 12 10 18 18 C 1.47125 * 109.05314 * 0.02562 * 8 6 5 19 19 H 1.09003 * 110.30576 * 241.71245 * 18 8 6 20 20 C 1.54083 * 109.66928 * 120.04350 * 18 8 6 21 21 S 1.83780 * 102.99676 * 270.13701 * 20 18 8 22 22 O 1.42106 * 109.81016 * 77.48814 * 21 20 18 23 23 O 1.42096 * 109.81166 * 211.84001 * 21 20 18 24 24 C 1.83779 * 94.23179 * 324.66734 * 21 20 18 25 25 C 1.47128 * 125.46758 * 90.00368 * 5 4 3 26 26 H 1.09002 * 110.30504 * 298.26715 * 25 5 4 27 27 H 1.09001 * 109.47244 * 161.94047 * 3 2 1 28 28 H 1.08998 * 109.47001 * 41.93668 * 3 2 1 29 29 H 1.09001 * 109.47054 * 59.99877 * 4 3 2 30 30 H 1.09003 * 109.47223 * 300.00327 * 4 3 2 31 31 H 1.09001 * 109.47092 * 30.04015 * 9 8 6 32 32 H 1.08999 * 109.47022 * 150.04013 * 9 8 6 33 33 H 0.97004 * 120.00067 * 179.97438 * 13 12 10 34 34 H 1.09003 * 110.70457 * 28.51506 * 20 18 8 35 35 H 1.08996 * 110.70940 * 151.58048 * 20 18 8 36 36 H 1.09000 * 110.25517 * 277.17277 * 24 21 20 37 37 H 1.08999 * 111.16685 * 153.92960 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.2976 1.4113 5 7 4.5831 -0.2975 1.4112 6 6 5.3608 -1.3651 1.1855 7 16 4.7343 -2.9238 0.8556 8 7 6.6734 -1.1017 1.2416 9 6 7.7460 -2.0782 1.0358 10 6 8.1126 -2.7071 2.3553 11 1 7.5983 -2.4090 3.2570 12 6 9.1045 -3.6631 2.4114 13 7 9.7310 -4.0258 1.3134 14 14 9.5594 -4.4424 4.0470 15 1 8.7258 -5.6512 4.2683 16 1 10.9938 -4.8264 4.0305 17 1 9.3203 -3.4688 5.1426 18 6 6.8644 0.3254 1.5442 19 1 7.3941 0.8174 0.7284 20 6 7.6518 0.4756 2.8601 21 16 6.3261 0.5227 4.1320 22 8 5.8396 -0.7913 4.3694 23 8 6.7303 1.3438 5.2189 24 6 5.1455 1.4402 3.0634 25 6 5.4368 0.8749 1.6589 26 1 5.2619 1.6373 0.8998 27 1 2.9709 0.9779 -0.3186 28 1 2.9716 -0.7636 -0.6868 29 1 2.7552 -1.2748 1.7299 30 1 2.7544 0.4667 2.0982 31 1 7.4063 -2.8513 0.3467 32 1 8.6187 -1.5765 0.6175 33 1 10.4291 -4.6981 1.3529 34 1 8.3067 -0.3814 3.0173 35 1 8.2251 1.4026 2.8625 36 1 5.3560 2.5091 3.0996 37 1 4.1142 1.2394 3.3535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016711663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = -17.043020 kcal Electronic energy + Delta-G solvation = -24726.955245 eV Core-core repulsion = 21144.060633 eV Total energy + Delta-G solvation = -3582.894612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52189 -38.13043 -38.02839 -37.03916 -36.84835 -35.21147 -34.48389 -32.61307 -30.45930 -29.24945 -26.89955 -26.20799 -24.37611 -22.38002 -22.16495 -19.93016 -19.22603 -18.59818 -18.26979 -17.84719 -17.74084 -17.25868 -16.68930 -16.33537 -16.23069 -16.08346 -15.63033 -15.17508 -15.00913 -14.57178 -14.13156 -13.82679 -13.77598 -13.66197 -13.50969 -13.44200 -13.34016 -13.26432 -13.11760 -13.06407 -12.90781 -12.66552 -12.54597 -12.12345 -12.03388 -11.86856 -11.71164 -11.54599 -11.27474 -10.61666 -9.63781 -8.77390 -8.47087 -8.22561 -6.31208 -0.96210 0.53081 0.90503 1.33472 1.40344 1.45887 1.48931 1.60367 1.85256 1.88464 2.22578 2.40933 2.54762 2.81637 2.95459 3.10571 3.16484 3.30109 3.47958 3.62311 3.97020 4.08436 4.13480 4.32427 4.48626 4.53022 4.59218 4.67586 4.85845 4.91816 5.02469 5.17851 5.33418 5.41569 5.69534 5.97281 6.01499 6.13712 6.62361 6.77786 7.36386 8.83959 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.012746 B = 0.005602 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.158765 B = 4996.926035 C = 6328.212911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.244 3.756 3 C -0.032 4.032 4 C 0.134 3.866 5 N -0.572 5.572 6 C 0.580 3.420 7 S -0.757 6.757 8 N -0.546 5.546 9 C 0.277 3.723 10 C -0.532 4.532 11 H 0.056 0.944 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.935 3.065 15 H -0.289 1.289 16 H -0.270 1.270 17 H -0.269 1.269 18 C 0.104 3.896 19 H 0.177 0.823 20 C -0.586 4.586 21 S 2.328 3.672 22 O -0.972 6.972 23 O -0.973 6.973 24 C -0.555 4.555 25 C 0.122 3.878 26 H 0.208 0.792 27 H 0.165 0.835 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.136 0.864 35 H 0.200 0.800 36 H 0.216 0.784 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 23.389 -1.726 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.073 4.073 3 C -0.073 4.073 4 C 0.011 3.989 5 N -0.284 5.284 6 C 0.218 3.782 7 S -0.626 6.626 8 N -0.251 5.251 9 C 0.158 3.842 10 C -0.571 4.571 11 H 0.075 0.925 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.762 3.238 15 H -0.216 1.216 16 H -0.195 1.195 17 H -0.194 1.194 18 C -0.002 4.002 19 H 0.194 0.806 20 C -0.717 4.717 21 S 2.517 3.483 22 O -0.969 6.969 23 O -0.970 6.970 24 C -0.689 4.689 25 C 0.016 3.984 26 H 0.225 0.775 27 H 0.182 0.818 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.217 0.783 36 H 0.233 0.767 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.146 21.995 -0.982 23.148 hybrid contribution 1.260 -0.861 0.470 1.597 sum -5.886 21.134 -0.512 21.944 Atomic orbital electron populations 1.81285 1.14790 1.11205 1.09769 1.29169 0.95071 0.91185 0.91914 1.19733 0.79919 1.08503 0.99113 1.21598 0.73665 1.06160 0.97441 1.47465 1.06758 1.05964 1.68251 1.21658 0.84909 0.91234 0.80424 1.93472 1.80161 1.13508 1.75442 1.48164 1.03975 1.10661 1.62288 1.19139 0.82327 0.86072 0.96647 1.21564 1.18242 1.22882 0.94370 0.92537 1.25420 0.96389 0.96548 0.98947 1.69969 1.25100 1.32110 1.28224 0.85903 0.77644 0.79114 0.81163 1.21582 1.19492 1.19393 1.23004 0.95946 0.81476 0.99813 0.80598 1.30893 1.15844 1.14969 1.10022 1.10530 0.81930 0.76290 0.79520 1.93690 1.79377 1.38250 1.85577 1.93562 1.82236 1.69468 1.51764 1.30797 1.16357 1.16266 1.05440 1.23075 0.85733 0.90047 0.99538 0.77500 0.81752 0.87388 0.90211 0.84148 0.95132 0.92736 0.92408 0.84625 0.78303 0.76691 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.01 18.54 20.01 0.37 -11.64 16 2 C 0.24 4.12 15.43 89.44 1.38 5.50 16 3 C -0.03 -0.31 6.03 28.79 0.17 -0.14 16 4 C 0.13 1.88 5.54 86.38 0.48 2.36 16 5 N -0.57 -10.49 2.68 -682.82 -1.83 -12.32 16 6 C 0.58 19.30 7.62 179.54 1.37 20.67 16 7 S -0.76 -35.82 28.59 -56.49 -1.62 -37.43 16 8 N -0.55 -17.72 2.68 -687.33 -1.84 -19.57 16 9 C 0.28 12.47 5.25 85.63 0.45 12.92 16 10 C -0.53 -27.73 7.76 25.60 0.20 -27.53 16 11 H 0.06 3.07 7.14 -2.91 -0.02 3.05 16 12 C 0.03 1.50 5.46 84.65 0.46 1.97 16 13 N -0.91 -51.44 13.29 21.45 0.28 -51.15 16 14 Si 0.94 44.64 29.54 68.60 2.03 46.66 16 15 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 C 0.10 1.67 3.85 45.37 0.17 1.84 16 19 H 0.18 1.24 8.14 -2.39 -0.02 1.22 16 20 C -0.59 -10.91 6.98 72.35 0.50 -10.41 16 21 S 2.33 52.43 6.07 -56.49 -0.34 52.09 16 22 O -0.97 -35.91 17.81 -127.53 -2.27 -38.19 16 23 O -0.97 -26.80 18.16 -127.53 -2.32 -29.11 16 24 C -0.55 -2.85 6.99 72.38 0.51 -2.35 16 25 C 0.12 0.89 3.86 45.41 0.18 1.06 16 26 H 0.21 -1.29 8.14 -2.39 -0.02 -1.31 16 27 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.85 7.35 -2.39 -0.02 1.84 16 30 H 0.14 0.66 6.86 -2.39 -0.02 0.65 16 31 H 0.03 1.66 7.35 -2.39 -0.02 1.64 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.14 3.98 5.68 -2.39 -0.01 3.97 16 35 H 0.20 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.22 -1.29 8.14 -2.39 -0.02 -1.30 16 37 H 0.17 0.46 6.63 -2.39 -0.02 0.44 16 Total: -1.00 -102.22 339.76 -0.55 -102.77 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: 1.11 Total: -8.00 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.87 Total: 5.89 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -3.01 Total: -94.68 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -4.59 Total: -67.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 16.61 SS G_CDS: -1.96 Total: 14.65 kcal Total: -102.22 -0.55 -102.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016711663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.724 kcal (2) G-P(sol) polarization free energy of solvation -102.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds