Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48499 * 109.46878 * 269.99914 * 3 2 1 5 5 H 1.48502 * 109.46989 * 29.99164 * 3 2 1 6 6 H 1.48494 * 109.47262 * 149.99433 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47214 * 179.97438 * 9 7 2 11 11 S 1.65597 * 120.00079 * 164.72113 * 10 9 7 12 12 O 1.42100 * 106.40448 * 178.54099 * 11 10 9 13 13 O 1.42103 * 106.40365 * 311.46606 * 11 10 9 14 14 C 1.76197 * 107.21750 * 65.00357 * 11 10 9 15 15 C 1.38372 * 119.84909 * 269.73004 * 14 11 10 16 16 C 1.37942 * 120.14990 * 179.72718 * 15 14 11 17 17 C 1.39625 * 119.84854 * 0.55965 * 16 15 14 18 18 C 1.47724 * 120.15358 * 179.68727 * 17 16 15 19 19 O 1.21470 * 120.00612 * 180.02562 * 18 17 16 20 20 O 1.34710 * 119.99824 * 0.02562 * 18 17 16 21 21 C 1.45207 * 117.00284 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.47023 * 179.97438 * 21 20 18 23 23 O 1.42900 * 109.47129 * 65.00547 * 22 21 20 24 24 C 1.39630 * 119.70053 * 359.71381 * 17 16 15 25 25 C 1.37944 * 119.84665 * 359.97438 * 24 17 16 26 26 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47652 * 59.99684 * 9 7 2 28 28 H 1.09000 * 109.47217 * 299.99790 * 9 7 2 29 29 H 0.97005 * 119.99811 * 345.00092 * 10 9 7 30 30 H 1.07999 * 119.92255 * 359.97201 * 15 14 11 31 31 H 1.08002 * 120.07604 * 180.27096 * 16 15 14 32 32 H 1.08991 * 109.46989 * 300.00509 * 21 20 18 33 33 H 1.09003 * 109.46603 * 60.00141 * 21 20 18 34 34 H 1.09000 * 109.46671 * 185.00334 * 22 21 20 35 35 H 1.09001 * 109.47145 * 304.99495 * 22 21 20 36 36 H 0.96700 * 113.99959 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.07530 * 179.97438 * 24 17 16 38 38 H 1.07999 * 119.92391 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 16 1.6896 -5.1410 0.3784 12 8 2.8247 -5.9872 0.2570 13 8 0.9309 -5.0252 1.5744 14 6 0.5614 -5.6383 -0.8803 15 6 -0.7896 -5.3757 -0.7372 16 6 -1.6776 -5.7573 -1.7213 17 6 -1.2120 -6.4203 -2.8585 18 6 -2.1579 -6.8381 -3.9134 19 8 -1.7499 -7.4151 -4.9014 20 8 -3.4731 -6.5792 -3.7797 21 6 -4.3441 -7.0180 -4.8555 22 6 -5.7898 -6.6394 -4.5278 23 8 -5.9143 -5.2161 -4.4975 24 6 0.1519 -6.6871 -2.9939 25 6 1.0298 -6.2942 -2.0050 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 3.1350 -3.4540 -0.2169 30 1 -1.1491 -4.8674 0.1453 31 1 -2.7313 -5.5479 -1.6104 32 1 -4.0437 -6.5359 -5.7857 33 1 -4.2683 -8.0998 -4.9659 34 1 -6.4537 -7.0460 -5.2907 35 1 -6.0610 -7.0488 -3.5547 36 1 -6.8068 -4.9036 -4.2955 37 1 0.5187 -7.1999 -3.8707 38 1 2.0850 -6.4996 -2.1086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021839121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -183.426533 kcal Electronic energy + Delta-G solvation = -25206.705138 eV Core-core repulsion = 21141.549974 eV Total energy + Delta-G solvation = -4065.155164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80954 -38.92827 -37.47513 -36.81505 -36.31365 -35.43049 -34.68272 -32.19753 -31.97795 -31.18859 -30.27106 -26.78299 -25.20995 -23.16749 -22.74010 -22.48141 -21.27816 -19.18409 -18.43780 -18.06599 -17.71972 -17.42643 -16.91592 -16.45293 -15.96424 -15.68952 -15.15805 -14.90145 -14.83239 -14.46027 -14.43080 -13.69256 -13.66367 -13.50021 -13.30379 -12.87032 -12.73782 -12.55148 -12.16391 -11.89929 -11.86515 -11.69610 -11.60523 -11.31577 -11.03213 -10.98688 -10.94143 -10.77842 -10.60805 -10.45621 -10.15766 -9.53697 -9.47140 -9.14128 -8.95370 -8.28329 -6.20427 -4.25255 0.16583 0.88497 1.22452 2.18798 2.29722 3.24413 3.31028 3.33537 3.39499 3.67560 3.75303 4.16024 4.31773 4.32815 4.49469 4.51412 4.69617 4.78614 4.83769 4.90654 5.10935 5.16820 5.20443 5.24376 5.39501 5.48514 5.83635 5.87129 6.01154 6.08086 6.12064 6.36865 6.63993 7.21237 7.23254 7.28681 7.46392 7.73315 7.77146 8.13138 8.78591 9.40027 10.89901 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.003383 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.698604 B = 8275.422239 C =10065.743287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.244 3.756 10 N -1.100 6.100 11 S 2.688 3.312 12 O -0.975 6.975 13 O -0.957 6.957 14 C -0.637 4.637 15 C -0.026 4.026 16 C -0.081 4.081 17 C -0.083 4.083 18 C 0.511 3.489 19 O -0.504 6.504 20 O -0.341 6.341 21 C 0.066 3.934 22 C 0.077 3.923 23 O -0.565 6.565 24 C -0.080 4.080 25 C -0.032 4.032 26 H 0.266 0.734 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.412 0.588 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.383 0.617 37 H 0.144 0.856 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 -14.052 -7.897 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.121 3.879 10 N -0.863 5.863 11 S 2.775 3.225 12 O -0.965 6.965 13 O -0.946 6.946 14 C -0.722 4.722 15 C -0.045 4.045 16 C -0.100 4.100 17 C -0.084 4.084 18 C 0.356 3.644 19 O -0.393 6.393 20 O -0.257 6.257 21 C -0.007 4.007 22 C -0.001 4.001 23 O -0.371 6.371 24 C -0.099 4.099 25 C -0.051 4.051 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.247 0.753 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.231 0.769 37 H 0.162 0.838 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.189 -14.678 -7.607 18.915 hybrid contribution -0.389 1.042 -0.936 1.453 sum -9.579 -13.637 -8.543 18.727 Atomic orbital electron populations 1.69930 1.06046 1.27429 1.49329 1.24966 0.94988 0.99471 0.94722 0.86407 0.79733 0.82554 0.78201 1.20511 1.21004 1.19682 1.21174 0.93482 0.89827 1.52554 0.91550 1.19136 0.87803 0.83525 0.97422 1.55439 1.19721 1.23582 1.87561 1.02037 0.73265 0.73014 0.74183 1.93540 1.49231 1.66621 1.87141 1.93581 1.72794 1.86296 1.41973 1.31635 1.11689 1.11191 1.17641 1.21070 0.91038 0.93720 0.98645 1.21599 1.01171 0.95190 0.92018 1.19351 0.92690 1.02138 0.94205 1.21209 0.81695 0.75869 0.85621 1.90830 1.78888 1.38925 1.30673 1.86608 1.17990 1.74144 1.46976 1.23171 0.87922 1.00038 0.89619 1.22216 0.93902 0.82736 1.01225 1.86590 1.35677 1.20382 1.94470 1.21320 0.91082 0.98147 0.99356 1.20882 1.00615 0.92881 0.90753 0.92407 0.95936 0.94181 0.75295 0.82900 0.83484 0.90160 0.89506 0.91168 0.92184 0.76906 0.83788 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.90 9.27 -34.44 -0.32 -14.22 16 8 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 9 C 0.24 5.82 5.98 -5.19 -0.03 5.79 16 10 N -1.10 -21.27 5.99 -11.65 -0.07 -21.34 16 11 S 2.69 47.59 5.74 -107.50 -0.62 46.97 16 12 O -0.98 -17.90 17.27 -57.17 -0.99 -18.88 16 13 O -0.96 -19.51 16.73 -57.17 -0.96 -20.46 16 14 C -0.64 -10.08 5.95 -39.49 -0.24 -10.32 16 15 C -0.03 -0.39 9.50 -39.64 -0.38 -0.77 16 16 C -0.08 -1.11 9.62 -39.17 -0.38 -1.49 16 17 C -0.08 -1.15 5.87 -104.98 -0.62 -1.77 16 18 C 0.51 7.04 7.90 34.61 0.27 7.31 16 19 O -0.50 -7.64 16.14 -19.24 -0.31 -7.95 16 20 O -0.34 -4.20 9.44 -43.30 -0.41 -4.61 16 21 C 0.07 0.61 5.85 37.16 0.22 0.83 16 22 C 0.08 0.52 7.44 37.16 0.28 0.79 16 23 O -0.57 -4.98 13.63 -38.79 -0.53 -5.51 16 24 C -0.08 -1.08 9.60 -39.17 -0.38 -1.45 16 25 C -0.03 -0.45 9.50 -39.64 -0.38 -0.83 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 1.03 7.75 -51.93 -0.40 0.62 16 29 H 0.41 7.24 8.54 -34.47 -0.29 6.94 16 30 H 0.15 2.26 7.60 -52.49 -0.40 1.86 16 31 H 0.15 1.73 7.61 -52.49 -0.40 1.33 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 1.50 9.12 45.56 0.42 1.92 16 37 H 0.14 1.68 7.65 -52.49 -0.40 1.28 16 38 H 0.15 1.80 7.60 -52.49 -0.40 1.41 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -35.02 353.54 -8.40 -43.42 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.53 Total: 6.26 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.04 Total: -14.56 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.67 Total: -45.52 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -3.19 Total: -57.42 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 47.59 SS G_CDS: -0.62 Total: 46.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.02 -8.40 -43.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021839121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.002 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds