Wall clock time and date at job start Tue Mar 31 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48499 * 109.46878 * 269.99914 * 3 2 1 5 5 H 1.48502 * 109.46989 * 29.99164 * 3 2 1 6 6 H 1.48494 * 109.47262 * 149.99433 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47214 * 179.97438 * 9 7 2 11 11 S 1.65597 * 120.00079 * 164.72113 * 10 9 7 12 12 O 1.42100 * 106.40448 * 178.54099 * 11 10 9 13 13 O 1.42103 * 106.40365 * 311.46606 * 11 10 9 14 14 C 1.76197 * 107.21750 * 65.00357 * 11 10 9 15 15 C 1.38372 * 119.84909 * 269.73004 * 14 11 10 16 16 C 1.37942 * 120.14990 * 179.72718 * 15 14 11 17 17 C 1.39625 * 119.84854 * 0.55965 * 16 15 14 18 18 C 1.47724 * 120.15358 * 179.68727 * 17 16 15 19 19 O 1.21470 * 120.00612 * 180.02562 * 18 17 16 20 20 O 1.34710 * 119.99824 * 0.02562 * 18 17 16 21 21 C 1.45207 * 117.00284 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.47023 * 179.97438 * 21 20 18 23 23 O 1.42900 * 109.47129 * 65.00547 * 22 21 20 24 24 C 1.39630 * 119.70053 * 359.71381 * 17 16 15 25 25 C 1.37944 * 119.84665 * 359.97438 * 24 17 16 26 26 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47652 * 59.99684 * 9 7 2 28 28 H 1.09000 * 109.47217 * 299.99790 * 9 7 2 29 29 H 0.97005 * 119.99811 * 345.00092 * 10 9 7 30 30 H 1.07999 * 119.92255 * 359.97201 * 15 14 11 31 31 H 1.08002 * 120.07604 * 180.27096 * 16 15 14 32 32 H 1.08991 * 109.46989 * 300.00509 * 21 20 18 33 33 H 1.09003 * 109.46603 * 60.00141 * 21 20 18 34 34 H 1.09000 * 109.46671 * 185.00334 * 22 21 20 35 35 H 1.09001 * 109.47145 * 304.99495 * 22 21 20 36 36 H 0.96700 * 113.99959 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.07530 * 179.97438 * 24 17 16 38 38 H 1.07999 * 119.92391 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 16 1.6896 -5.1410 0.3784 12 8 2.8247 -5.9872 0.2570 13 8 0.9309 -5.0252 1.5744 14 6 0.5614 -5.6383 -0.8803 15 6 -0.7896 -5.3757 -0.7372 16 6 -1.6776 -5.7573 -1.7213 17 6 -1.2120 -6.4203 -2.8585 18 6 -2.1579 -6.8381 -3.9134 19 8 -1.7499 -7.4151 -4.9014 20 8 -3.4731 -6.5792 -3.7797 21 6 -4.3441 -7.0180 -4.8555 22 6 -5.7898 -6.6394 -4.5278 23 8 -5.9143 -5.2161 -4.4975 24 6 0.1519 -6.6871 -2.9939 25 6 1.0298 -6.2942 -2.0050 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 3.1350 -3.4540 -0.2169 30 1 -1.1491 -4.8674 0.1453 31 1 -2.7313 -5.5479 -1.6104 32 1 -4.0437 -6.5359 -5.7857 33 1 -4.2683 -8.0998 -4.9659 34 1 -6.4537 -7.0460 -5.2907 35 1 -6.0610 -7.0488 -3.5547 36 1 -6.8068 -4.9036 -4.2955 37 1 0.5187 -7.1999 -3.8707 38 1 2.0850 -6.4996 -2.1086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021839121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:06 Heat of formation + Delta-G solvation = -211.088092 kcal Electronic energy + Delta-G solvation = -25207.904633 eV Core-core repulsion = 21141.549974 eV Total energy + Delta-G solvation = -4066.354659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83716 -40.01223 -38.33633 -38.24391 -37.15288 -36.96272 -36.47510 -34.12331 -33.08802 -32.31144 -30.99125 -28.72300 -26.27682 -24.52673 -24.09180 -23.54702 -22.31158 -20.62877 -19.52158 -19.23767 -18.82506 -18.63697 -18.08825 -17.69634 -17.36412 -17.21617 -16.59283 -16.07158 -15.89145 -15.51548 -15.41407 -15.20625 -14.72620 -14.63725 -14.52585 -14.25978 -14.07684 -13.88048 -13.60188 -13.56699 -13.23731 -13.14203 -12.75204 -12.58159 -12.53453 -12.42953 -12.18755 -12.07124 -11.87988 -11.74586 -11.40447 -11.00480 -10.85931 -10.69251 -10.26124 -10.11963 -8.23354 -6.34886 -1.00846 -0.54930 0.10809 1.08304 1.37856 1.46504 1.47308 1.58066 2.06102 2.36957 2.44270 2.74673 3.12011 3.24836 3.26393 3.36907 3.66335 3.72320 3.90038 4.08860 4.09600 4.18197 4.38994 4.40112 4.52291 4.60424 4.63983 4.76977 4.80527 4.85752 4.99306 5.13882 5.29100 5.32607 5.51788 5.76090 5.98675 6.31930 6.43901 6.79105 6.88773 7.34721 8.87606 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010793 B = 0.003383 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.698604 B = 8275.422239 C =10065.743287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.256 3.744 10 N -1.100 6.100 11 S 2.709 3.291 12 O -0.978 6.978 13 O -0.987 6.987 14 C -0.647 4.647 15 C -0.041 4.041 16 C -0.078 4.078 17 C -0.087 4.087 18 C 0.515 3.485 19 O -0.521 6.521 20 O -0.346 6.346 21 C 0.054 3.946 22 C 0.078 3.922 23 O -0.597 6.597 24 C -0.077 4.077 25 C -0.032 4.032 26 H 0.268 0.732 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.420 0.580 30 H 0.150 0.850 31 H 0.165 0.835 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.402 0.598 37 H 0.164 0.836 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -14.456 -8.982 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.589 4.589 8 H 0.093 0.907 9 C 0.132 3.868 10 N -0.862 5.862 11 S 2.799 3.201 12 O -0.969 6.969 13 O -0.977 6.977 14 C -0.734 4.734 15 C -0.060 4.060 16 C -0.096 4.096 17 C -0.088 4.088 18 C 0.360 3.640 19 O -0.411 6.411 20 O -0.262 6.262 21 C -0.019 4.019 22 C 0.001 3.999 23 O -0.406 6.406 24 C -0.096 4.096 25 C -0.051 4.051 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.256 0.744 30 H 0.168 0.832 31 H 0.182 0.818 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.182 0.818 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.250 -15.077 -8.662 19.696 hybrid contribution -0.462 1.062 -0.668 1.337 sum -9.712 -14.015 -9.331 19.437 Atomic orbital electron populations 1.70044 1.07554 1.28367 1.50362 1.25849 0.95807 1.03074 0.94334 0.85370 0.78575 0.78167 0.78434 1.19778 1.20894 1.18822 1.21622 0.94202 0.90943 1.52123 0.90710 1.18723 0.88008 0.84303 0.95797 1.55251 1.19719 1.23424 1.87833 1.01195 0.72957 0.72140 0.73811 1.93528 1.49832 1.66171 1.87352 1.93539 1.73357 1.86505 1.44325 1.31249 1.11341 1.12948 1.17889 1.21165 0.91258 0.94365 0.99227 1.21741 1.01827 0.94610 0.91455 1.19566 0.93257 1.01751 0.94272 1.21125 0.82242 0.75492 0.85149 1.90818 1.79291 1.39795 1.31232 1.86606 1.17476 1.73978 1.48186 1.23582 0.88733 1.01159 0.88454 1.22367 0.92552 0.82019 1.02960 1.86526 1.37695 1.21697 1.94723 1.21567 0.90811 0.97541 0.99645 1.21156 1.01852 0.92100 0.90033 0.92277 0.96856 0.96530 0.74378 0.83236 0.81764 0.91174 0.87732 0.87869 0.91112 0.74740 0.81812 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.33 13.29 21.45 0.28 -52.04 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.55 -28.82 9.27 25.60 0.24 -28.59 16 8 H 0.07 3.69 7.65 -2.91 -0.02 3.67 16 9 C 0.26 12.44 5.98 85.63 0.51 12.95 16 10 N -1.10 -42.72 5.99 -190.78 -1.14 -43.86 16 11 S 2.71 96.00 5.74 -56.49 -0.32 95.68 16 12 O -0.98 -35.09 17.27 -128.00 -2.21 -37.30 16 13 O -0.99 -41.07 16.73 -128.00 -2.14 -43.21 16 14 C -0.65 -20.22 5.95 22.33 0.13 -20.09 16 15 C -0.04 -1.25 9.50 22.23 0.21 -1.04 16 16 C -0.08 -2.09 9.62 22.53 0.22 -1.87 16 17 C -0.09 -2.33 5.87 -20.10 -0.12 -2.45 16 18 C 0.51 13.55 7.90 70.33 0.56 14.11 16 19 O -0.52 -15.11 16.14 19.93 0.32 -14.79 16 20 O -0.35 -8.12 9.44 -53.54 -0.51 -8.63 16 21 C 0.05 0.91 5.85 71.98 0.42 1.33 16 22 C 0.08 0.88 7.44 71.98 0.54 1.41 16 23 O -0.60 -9.66 13.63 -145.58 -1.98 -11.65 16 24 C -0.08 -1.94 9.60 22.54 0.22 -1.72 16 25 C -0.03 -0.87 9.50 22.23 0.21 -0.66 16 26 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.02 0.89 7.75 -2.39 -0.02 0.87 16 29 H 0.42 14.62 8.54 -96.74 -0.83 13.79 16 30 H 0.15 4.59 7.60 -2.91 -0.02 4.57 16 31 H 0.16 3.73 7.61 -2.91 -0.02 3.71 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.40 2.56 9.12 -74.06 -0.68 1.88 16 37 H 0.16 3.46 7.65 -2.91 -0.02 3.44 16 38 H 0.17 3.75 7.60 -2.91 -0.02 3.73 16 Total: -1.00 -73.80 353.54 -2.46 -76.26 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.38 Total: 21.37 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 3.59 Total: -25.63 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -0.86 Total: -95.91 kcal Atomic # 8 Polarization: -109.05 SS G_CDS: -6.52 Total: -115.57 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 96.00 SS G_CDS: -0.32 Total: 95.68 kcal Total: -73.80 -2.46 -76.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021839121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.826 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds