Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35645 * 116.99986 * 2 1 4 4 C 1.38702 * 120.15061 * 359.72314 * 3 2 1 5 5 C 1.38054 * 120.08838 * 180.29933 * 4 3 2 6 6 C 1.38562 * 120.40442 * 359.95298 * 5 4 3 7 7 S 1.76196 * 119.84733 * 180.02562 * 6 5 4 8 8 N 1.65604 * 107.21860 * 270.02099 * 7 6 5 9 9 O 1.42098 * 106.40480 * 23.56174 * 7 6 5 10 10 O 1.42100 * 106.40265 * 156.48167 * 7 6 5 11 11 C 1.37765 * 120.30415 * 0.04550 * 6 5 4 12 12 C 1.39764 * 119.90653 * 359.97438 * 11 6 5 13 13 C 1.47402 * 120.20240 * 179.97438 * 12 11 6 14 14 O 1.21506 * 120.00203 * 180.02562 * 13 12 11 15 15 O 1.34752 * 119.99364 * 0.02562 * 13 12 11 16 16 C 1.45203 * 116.99784 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47325 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47265 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99780 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99950 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47446 * 59.99993 * 22 20 18 24 24 H 1.48495 * 109.47448 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47082 * 300.00293 * 22 20 18 26 26 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47424 * 299.99794 * 1 2 3 28 28 H 1.08999 * 109.47372 * 60.00350 * 1 2 3 29 29 H 1.08006 * 119.96125 * 0.27521 * 4 3 2 30 30 H 1.07998 * 119.79846 * 179.97438 * 5 4 3 31 31 H 0.96996 * 119.99806 * 150.00305 * 8 7 6 32 32 H 0.96996 * 119.99607 * 330.00346 * 8 7 6 33 33 H 1.08006 * 120.04741 * 179.97438 * 11 6 5 34 34 H 1.09005 * 109.47213 * 300.00222 * 16 15 13 35 35 H 1.09006 * 109.47237 * 59.99770 * 16 15 13 36 36 H 1.09008 * 109.47200 * 299.99613 * 17 16 15 37 37 H 1.08993 * 109.47139 * 60.00020 * 17 16 15 38 38 H 0.97002 * 119.99591 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3738 -0.0058 5 6 1.9205 3.6032 -0.0120 6 6 3.3038 3.6840 -0.0116 7 16 4.0901 5.2607 -0.0189 8 7 4.3093 5.6918 -1.6027 9 8 3.1507 6.1802 0.5209 10 8 5.3874 5.0647 0.5269 11 6 4.0671 2.5371 -0.0058 12 6 3.4446 1.2858 0.0001 13 6 4.2549 0.0545 0.0057 14 8 3.7100 -1.0315 0.0104 15 8 5.6001 0.1334 0.0056 16 6 6.3339 -1.1196 0.0119 17 6 7.8364 -0.8308 0.0102 18 6 8.5979 -2.1312 0.0160 19 1 8.0637 -3.0698 0.0201 20 6 9.9767 -2.1227 0.0151 21 7 10.6272 -0.9797 0.0097 22 14 10.9206 -3.7346 0.0217 23 1 10.5660 -4.5209 -1.1871 24 1 12.3789 -3.4543 0.0201 25 1 10.5674 -4.5101 1.2378 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2137 2.3194 -0.0058 30 1 1.3301 4.5075 -0.0169 31 1 4.3078 6.6284 -1.8551 32 1 4.4393 5.0077 -2.2780 33 1 5.1450 2.6049 -0.0059 34 1 6.0739 -1.6885 0.9046 35 1 6.0743 -1.6971 -0.8754 36 1 8.0961 -0.2621 -0.8828 37 1 8.0963 -0.2531 0.8971 38 1 11.5972 -0.9737 0.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026483260.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = -174.704789 kcal Electronic energy + Delta-G solvation = -25426.699829 eV Core-core repulsion = 21361.922868 eV Total energy + Delta-G solvation = -4064.776961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95054 -39.42877 -37.88551 -37.34268 -36.01346 -35.98810 -33.43758 -33.33559 -32.05935 -30.94329 -30.15936 -27.86478 -25.49049 -24.20192 -23.04473 -21.60664 -20.69856 -19.66863 -18.79159 -18.28146 -17.61389 -17.34047 -16.91047 -16.35859 -16.32855 -15.96009 -15.73983 -15.68281 -15.34309 -14.78314 -14.45675 -14.13783 -13.67588 -13.58036 -12.92639 -12.80502 -12.54324 -12.39702 -12.32910 -12.24713 -12.11823 -11.76976 -11.68858 -11.32528 -11.21145 -11.03696 -10.74450 -10.71922 -10.67066 -10.21057 -9.66165 -9.60699 -9.56772 -9.29130 -9.06639 -8.41373 -6.07398 -4.12018 0.13546 0.35447 0.59894 2.40066 2.71106 2.95849 3.02766 3.30399 3.31973 3.36105 3.39393 3.52665 4.06411 4.25707 4.39889 4.47420 4.62777 4.74248 4.76720 5.00412 5.06767 5.11892 5.28904 5.31707 5.40883 5.56253 5.66702 5.72060 6.09473 6.11059 6.11791 6.65195 6.76618 6.79220 6.95614 7.58331 7.65454 7.89095 8.18508 8.27451 8.93179 9.52118 11.03975 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003237 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.977605 B = 8646.925770 C =10798.169972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.273 6.273 3 C 0.240 3.760 4 C -0.244 4.244 5 C 0.049 3.951 6 C -0.732 4.732 7 S 2.708 3.292 8 N -1.249 6.249 9 O -0.967 6.967 10 O -0.951 6.951 11 C 0.076 3.924 12 C -0.172 4.172 13 C 0.500 3.500 14 O -0.495 6.495 15 O -0.354 6.354 16 C 0.078 3.922 17 C 0.024 3.976 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.900 3.100 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.420 0.580 32 H 0.419 0.581 33 H 0.169 0.831 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.397 13.070 -3.947 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.182 6.182 3 C 0.190 3.810 4 C -0.263 4.263 5 C 0.030 3.970 6 C -0.819 4.819 7 S 2.795 3.205 8 N -0.923 5.923 9 O -0.956 6.956 10 O -0.940 6.940 11 C 0.056 3.944 12 C -0.175 4.175 13 C 0.344 3.656 14 O -0.384 6.384 15 O -0.271 6.271 16 C 0.005 3.995 17 C -0.013 4.013 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.250 0.750 32 H 0.246 0.754 33 H 0.186 0.814 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.042 13.008 -3.003 25.770 hybrid contribution -0.041 -1.465 -0.691 1.620 sum -22.083 11.543 -3.693 25.190 Atomic orbital electron populations 1.23312 0.77778 1.05063 1.01687 1.86438 1.21683 1.25198 1.84886 1.19354 0.90848 0.85261 0.85544 1.21308 1.00841 0.91571 1.12590 1.20879 0.92167 0.98346 0.85622 1.30578 1.04767 1.21011 1.25561 1.01430 0.73975 0.72731 0.72332 1.53139 1.92742 1.17482 1.28919 1.93582 1.63897 1.61368 1.76797 1.93671 1.38820 1.85497 1.75996 1.21306 1.01391 0.89007 0.82676 1.18759 0.89810 0.93093 1.15820 1.20587 0.82520 0.88274 0.74218 1.90851 1.73213 1.29212 1.45118 1.86567 1.17451 1.40065 1.82992 1.23685 0.93817 0.80915 1.01055 1.19186 0.84930 0.98166 0.99041 1.20931 0.91286 0.91943 1.52430 0.92328 1.24975 0.97621 0.96622 0.94875 1.69968 1.08104 1.25053 1.49563 0.86532 0.78622 0.83378 0.78741 1.20109 1.21128 1.20094 0.87362 0.91975 0.92002 0.83507 0.83219 0.74999 0.75406 0.81389 0.92185 0.92206 0.95255 0.95162 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.27 -3.46 8.57 -40.52 -0.35 -3.80 16 3 C 0.24 2.96 6.70 -38.68 -0.26 2.70 16 4 C -0.24 -2.12 9.03 -39.48 -0.36 -2.48 16 5 C 0.05 0.41 9.50 -39.53 -0.38 0.04 16 6 C -0.73 -7.35 5.97 -39.63 -0.24 -7.59 16 7 S 2.71 25.85 6.28 -107.50 -0.67 25.17 16 8 N -1.25 -7.02 9.52 60.35 0.57 -6.45 16 9 O -0.97 -11.07 17.27 -57.17 -0.99 -12.06 16 10 O -0.95 -13.25 17.26 -57.17 -0.99 -14.24 16 11 C 0.08 0.96 9.08 -39.18 -0.36 0.60 16 12 C -0.17 -2.53 5.88 -104.86 -0.62 -3.15 16 13 C 0.50 9.35 7.89 34.46 0.27 9.62 16 14 O -0.49 -10.26 14.95 -26.59 -0.40 -10.66 16 15 O -0.35 -7.24 9.47 -40.63 -0.38 -7.63 16 16 C 0.08 1.75 5.41 37.15 0.20 1.96 16 17 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 18 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 28 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 29 H 0.15 0.78 6.30 -52.48 -0.33 0.45 16 30 H 0.15 0.87 7.60 -52.49 -0.40 0.47 16 31 H 0.42 1.59 8.96 -34.47 -0.31 1.28 16 32 H 0.42 1.65 8.96 -34.47 -0.31 1.34 16 33 H 0.17 2.18 7.15 -52.48 -0.38 1.81 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -38.52 347.72 -7.72 -46.24 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -4.17 Total: -2.24 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.30 Total: -10.32 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 1.31 Total: -32.22 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -3.10 Total: -48.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 25.85 SS G_CDS: -0.67 Total: 25.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.52 -7.72 -46.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026483260.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.467 kcal (2) G-P(sol) polarization free energy of solvation -38.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds